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Takifugu rubripes
cluster # 1850 cluster # 1850       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1850#0 length = 890 sequences # 2  
consensus_1850#1 length = 444 sequences # 1  

consensusID : consensus_1850#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 890
fasta sequence
                              [CCAAACAGAAAGCTAAAGAGCAGTTTCCTTTTCTCATCTAATCTAACTCTCCTCTATGTTGCCCAACATCTGTCTGTGCTTTGGACCGGAGAGCAGTGTTGTTAATTGTAATTAAAGCACACACCTCTATAAATACTGGCTATACCTGCCAGCAGTAAAGCTCGAGAACGTCGTGCGGAGTGCGTACTTTGTTTTTCTTCTATTANTAACTCACTACCACCGTACTCGGGAGCTAGAATATCAGGCTGTTGGACTTTCAGAACTGATGGCAGCAGTGGGGATGGATCTCTGGACCGGCTCCTCCAGCCTGTCAGCACAGGCCTCTCGCCCAGGAAGAGGACCACCAGCCAGTGCAAGTCGGAGCCGCCCCTCCTGCGCACGTCCAAACGGACCATCTACACCGCCGGCCGGCCCCCTTGGTACAACGAGCATGGAACTCAGTCCAAGGAGGCCTTTGCTATTGGCTTATGTGGCGGCAGCGCTTCAGGGAAGACGACTGTGGCCAGGAAAATAATCGAAGCTCTGGATGTCCCCTGGGTCGTCCTGCTGTCCATGGACTCTTTTTACAAGGTCCTGTCTGCTGAAGAGCAGATCCGAGCTGCCAGCAACGACTACAACTTTGACCACCCTGACGCCTTTGACTTCGACCTGCTGACGGACACCCTGCGCAAGCTCAAACAGGGGAAGAGTGTGAAAATTCCCGTGTACGACTTCACGACTCACGGCAGGCAGAAGGAGTGGAAAACTGTATATGGAGCCAGTGTTATCATCTTTGAGGGAATCATGGCCTTCACAGATAAAAAGCTCCTACAGTTGCTGGATATGAAGATATTTGTGGACACAGACTCCGACATCCGGCTGGTCCGCAGGCTGAGGAGGGATATTACAGA]

[+] EMBL CA589447             [CCAAACAGAAAGCTAAAGAGCAGTTTCCTTTTCTCATCTAATCTAACTCTCCTCTATGTTGCCCAACATCTGTCTGTGCTTTGGACCGGAGAGCAGTGTTGTTAATTGTAATTAAAGCACACACCTCTATAAATACTGGCTATACCTGCCAGCAGTAAAGCTCGAGAACGTCGTGCGGAGTGCGTACTTTGTTTTTCTTCTATTANTAACTCACTACCACCGTACTCGGGAGCTAGAATATCAGGCTGTTGGACTTTCAGAACTGATGGCAGCAGTGGGGATGGATCTCTGGACCGGCTCCTCCAGCCTGTCAGCACAGGCCTCTCGCCCAGGAAGAGGACCACCAGCCAGTGCAAGTCGGAGCCGCCCCTCCTGCGCACGTCCAAACGGACCATCTACACCGCCGGCCGGCCCCCTTGGTACAACGAGCATGGAACTCAGTCCAAGGAGGCCTTTGCTATTGGCTTATGTGGCGGCAGCGCTTCAGGGAAGACGACTGTGGCCAGGAAAATAATCGAAGCTCTGGATGTCCCCTGGGTCGTCCTGCTGTCCATGGACTCTTTTTACAAGGTC                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CA332722             [                                                                                                                                                                                                                                                                             CAGCAGTGGGGATGGATCTCTGGACCGGCTCCTCCAGCCTGTCAGCACAGGCCTCTCGCCCAGGAAGAGGACCACCAGCCAGTGCAAGTCGGAGCCGCCCCTCCTGCGCACGTCCAAACGGACCATCTACACCGCCGGCCGGCCCCCTTGGTACAACGAGCATGGAACTCAGTCCAAGGAGGCCTTTGCTATTGGCTTATGTGGCGGCAGCGCTTCAGGGAAGACGACTGTGGCCAGGAAAATAATCGAAGCTCTGGATGTCCCCTGGGTCGTCCTGCTGTCCATGGACTCTTTTTACAAGGTCCTGTCTGCTGAAGAGCAGATCCGAGCTGCCAGCAACGACTACAACTTTGACCACCCTGACGCCTTTGACTTCGACCTGCTGACGGACACCCTGCGCAAGCTCAAACAGGGGAAGAGTGTGAAAATTCCCGTGTACGACTTCACGACTCACGGCAGGCAGAAGGAGTGGAAAACTGTATATGGAGCCAGTGTTATCATCTTTGAGGGAATCATGGCCTTCACAGATAAAAAGCTCCTACAGTTGCTGGATATGAAGATATTTGTGGACACAGACTCCGACATCCGGCTGGTCCGCAGGCTGAGGAGGGATATTACAGA]


>consensus_1850#0 CCAAACAGAAAGCTAAAGAGCAGTTTCCTTTTCTCATCTAATCTAACTCTCCTCTATGTT GCCCAACATCTGTCTGTGCTTTGGACCGGAGAGCAGTGTTGTTAATTGTAATTAAAGCAC ACACCTCTATAAATACTGGCTATACCTGCCAGCAGTAAAGCTCGAGAACGTCGTGCGGAG TGCGTACTTTGTTTTTCTTCTATTANTAACTCACTACCACCGTACTCGGGAGCTAGAATA TCAGGCTGTTGGACTTTCAGAACTGATGGCAGCAGTGGGGATGGATCTCTGGACCGGCTC CTCCAGCCTGTCAGCACAGGCCTCTCGCCCAGGAAGAGGACCACCAGCCAGTGCAAGTCG GAGCCGCCCCTCCTGCGCACGTCCAAACGGACCATCTACACCGCCGGCCGGCCCCCTTGG TACAACGAGCATGGAACTCAGTCCAAGGAGGCCTTTGCTATTGGCTTATGTGGCGGCAGC GCTTCAGGGAAGACGACTGTGGCCAGGAAAATAATCGAAGCTCTGGATGTCCCCTGGGTC GTCCTGCTGTCCATGGACTCTTTTTACAAGGTCCTGTCTGCTGAAGAGCAGATCCGAGCT GCCAGCAACGACTACAACTTTGACCACCCTGACGCCTTTGACTTCGACCTGCTGACGGAC ACCCTGCGCAAGCTCAAACAGGGGAAGAGTGTGAAAATTCCCGTGTACGACTTCACGACT CACGGCAGGCAGAAGGAGTGGAAAACTGTATATGGAGCCAGTGTTATCATCTTTGAGGGA ATCATGGCCTTCACAGATAAAAAGCTCCTACAGTTGCTGGATATGAAGATATTTGTGGAC ACAGACTCCGACATCCGGCTGGTCCGCAGGCTGAGGAGGGATATTACAGA



consensusID : consensus_1850#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 444
fasta sequence
                              [GCAAAGATGGAGAACGAAGAAAAAACTACTACTTTGACCAACAGCAGTGGGGATGGATCTCTGGACCGGCTCCTCCAGCCTGTCAGCACAGGCCTCTCGCCCAGGAAGAGGACCACCAGCCAGTGCAAGTCGGAGCCGCCCCTCCTGCGCACGTCCAAACGGACCATCTACACCGCCGGCCGGCCCCCTTGGTACAACGAGCATGGAACTCAGTCCAAGGAGGCCTTTGCTATTGGCTTATGTGGCGGCAGCGCTTCAGGGAAGACGACTGTGGCCAGGAAAATAATCGAAGCTCTGGATGTCCCCTGGGTCGTCCTGCTGTCCATGGACTCTTTTTACAAGGTCCTGTCTGCTGAAGAGCAGATCCGAGCTGCCAGCAACGACTACAACTTTGACCACCCTGACGCCTTTGACTTCGACCTGCTGACGGACACCCTGCGCAAG]

[+] EMBL CA590911             [GCAAAGATGGAGAACGAAGAAAAAACTACTACTTTGACCAACAGCAGTGGGGATGGATCTCTGGACCGGCTCCTCCAGCCTGTCAGCACAGGCCTCTCGCCCAGGAAGAGGACCACCAGCCAGTGCAAGTCGGAGCCGCCCCTCCTGCGCACGTCCAAACGGACCATCTACACCGCCGGCCGGCCCCCTTGGTACAACGAGCATGGAACTCAGTCCAAGGAGGCCTTTGCTATTGGCTTATGTGGCGGCAGCGCTTCAGGGAAGACGACTGTGGCCAGGAAAATAATCGAAGCTCTGGATGTCCCCTGGGTCGTCCTGCTGTCCATGGACTCTTTTTACAAGGTCCTGTCTGCTGAAGAGCAGATCCGAGCTGCCAGCAACGACTACAACTTTGACCACCCTGACGCCTTTGACTTCGACCTGCTGACGGACACCCTGCGCAAG]


>consensus_1850#1 GCAAAGATGGAGAACGAAGAAAAAACTACTACTTTGACCAACAGCAGTGGGGATGGATCT CTGGACCGGCTCCTCCAGCCTGTCAGCACAGGCCTCTCGCCCAGGAAGAGGACCACCAGC CAGTGCAAGTCGGAGCCGCCCCTCCTGCGCACGTCCAAACGGACCATCTACACCGCCGGC CGGCCCCCTTGGTACAACGAGCATGGAACTCAGTCCAAGGAGGCCTTTGCTATTGGCTTA TGTGGCGGCAGCGCTTCAGGGAAGACGACTGTGGCCAGGAAAATAATCGAAGCTCTGGAT GTCCCCTGGGTCGTCCTGCTGTCCATGGACTCTTTTTACAAGGTCCTGTCTGCTGAAGAG CAGATCCGAGCTGCCAGCAACGACTACAACTTTGACCACCCTGACGCCTTTGACTTCGAC CTGCTGACGGACACCCTGCGCAAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1850#0      CCAAACAGAAAGCTAAAGAGCAGTTTCCTTTTCTCATCTAATCTAACTCTCCTCTATGTT 60
consensus_1850#1      ------------------------------------------------------------
                                                                                  

consensus_1850#0      GCCCAACATCTGTCTGTGCTTTGGACCGGAGAGCAGTGTTGTTAATTGTAATTAAAGCAC 120
consensus_1850#1      ------------------------------------------------------------
                                                                                  

consensus_1850#0      ACACCTCTATAAATACTGGCTATACCTGCCAGCAGTAAAGCTCGAGAACGTCGTGCGGAG 180
consensus_1850#1      ------------------------------------------------------------
                                                                                  

consensus_1850#0      TGCGTACTTTGTTTTTCTTCTATTANTAACTCACTACCACCGTACTCGGGAGCTAGAATA 240
consensus_1850#1      --------------------------------------GCAAAGATGGAGAAC--GAAGA 20
                                                             *     * * ** *  *** *

consensus_1850#0      TCAGGCTGTTGGACTTTCAGAACTGATGGCAGCAGTGGGGATGGATCTCTGGACCGGCTC 300
consensus_1850#1      AAAAACTACT--ACTTT---GACCAA---CAGCAGTGGGGATGGATCTCTGGACCGGCTC 72
                        *  **  *  *****    **  *   *******************************

consensus_1850#0      CTCCAGCCTGTCAGCACAGGCCTCTCGCCCAGGAAGAGGACCACCAGCCAGTGCAAGTCG 360
consensus_1850#1      CTCCAGCCTGTCAGCACAGGCCTCTCGCCCAGGAAGAGGACCACCAGCCAGTGCAAGTCG 132
                      ************************************************************

consensus_1850#0      GAGCCGCCCCTCCTGCGCACGTCCAAACGGACCATCTACACCGCCGGCCGGCCCCCTTGG 420
consensus_1850#1      GAGCCGCCCCTCCTGCGCACGTCCAAACGGACCATCTACACCGCCGGCCGGCCCCCTTGG 192
                      ************************************************************

consensus_1850#0      TACAACGAGCATGGAACTCAGTCCAAGGAGGCCTTTGCTATTGGCTTATGTGGCGGCAGC 480
consensus_1850#1      TACAACGAGCATGGAACTCAGTCCAAGGAGGCCTTTGCTATTGGCTTATGTGGCGGCAGC 252
                      ************************************************************

consensus_1850#0      GCTTCAGGGAAGACGACTGTGGCCAGGAAAATAATCGAAGCTCTGGATGTCCCCTGGGTC 540
consensus_1850#1      GCTTCAGGGAAGACGACTGTGGCCAGGAAAATAATCGAAGCTCTGGATGTCCCCTGGGTC 312
                      ************************************************************

consensus_1850#0      GTCCTGCTGTCCATGGACTCTTTTTACAAGGTCCTGTCTGCTGAAGAGCAGATCCGAGCT 600
consensus_1850#1      GTCCTGCTGTCCATGGACTCTTTTTACAAGGTCCTGTCTGCTGAAGAGCAGATCCGAGCT 372
                      ************************************************************

consensus_1850#0      GCCAGCAACGACTACAACTTTGACCACCCTGACGCCTTTGACTTCGACCTGCTGACGGAC 660
consensus_1850#1      GCCAGCAACGACTACAACTTTGACCACCCTGACGCCTTTGACTTCGACCTGCTGACGGAC 432
                      ************************************************************

consensus_1850#0      ACCCTGCGCAAGCTCAAACAGGGGAAGAGTGTGAAAATTCCCGTGTACGACTTCACGACT 720
consensus_1850#1      ACCCTGCGCAAG------------------------------------------------ 444
                      ************                                                

consensus_1850#0      CACGGCAGGCAGAAGGAGTGGAAAACTGTATATGGAGCCAGTGTTATCATCTTTGAGGGA 780
consensus_1850#1      ------------------------------------------------------------
                                                                                  

consensus_1850#0      ATCATGGCCTTCACAGATAAAAAGCTCCTACAGTTGCTGGATATGAAGATATTTGTGGAC 840
consensus_1850#1      ------------------------------------------------------------
                                                                                  

consensus_1850#0      ACAGACTCCGACATCCGGCTGGTCCGCAGGCTGAGGAGGGATATTACAGA 890
consensus_1850#1      --------------------------------------------------
                                                                        




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)