These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1850#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 890 fasta sequence [CCAAACAGAAAGCTAAAGAGCAGTTTCCTTTTCTCATCTAATCTAACTCTCCTCTATGTTGCCCAACATCTGTCTGTGCTTTGGACCGGAGAGCAGTGTTGTTAATTGTAATTAAAGCACACACCTCTATAAATACTGGCTATACCTGCCAGCAGTAAAGCTCGAGAACGTCGTGCGGAGTGCGTACTTTGTTTTTCTTCTATTANTAACTCACTACCACCGTACTCGGGAGCTAGAATATCAGGCTGTTGGACTTTCAGAACTGATGGCAGCAGTGGGGATGGATCTCTGGACCGGCTCCTCCAGCCTGTCAGCACAGGCCTCTCGCCCAGGAAGAGGACCACCAGCCAGTGCAAGTCGGAGCCGCCCCTCCTGCGCACGTCCAAACGGACCATCTACACCGCCGGCCGGCCCCCTTGGTACAACGAGCATGGAACTCAGTCCAAGGAGGCCTTTGCTATTGGCTTATGTGGCGGCAGCGCTTCAGGGAAGACGACTGTGGCCAGGAAAATAATCGAAGCTCTGGATGTCCCCTGGGTCGTCCTGCTGTCCATGGACTCTTTTTACAAGGTCCTGTCTGCTGAAGAGCAGATCCGAGCTGCCAGCAACGACTACAACTTTGACCACCCTGACGCCTTTGACTTCGACCTGCTGACGGACACCCTGCGCAAGCTCAAACAGGGGAAGAGTGTGAAAATTCCCGTGTACGACTTCACGACTCACGGCAGGCAGAAGGAGTGGAAAACTGTATATGGAGCCAGTGTTATCATCTTTGAGGGAATCATGGCCTTCACAGATAAAAAGCTCCTACAGTTGCTGGATATGAAGATATTTGTGGACACAGACTCCGACATCCGGCTGGTCCGCAGGCTGAGGAGGGATATTACAGA] [+] EMBL CA589447 [CCAAACAGAAAGCTAAAGAGCAGTTTCCTTTTCTCATCTAATCTAACTCTCCTCTATGTTGCCCAACATCTGTCTGTGCTTTGGACCGGAGAGCAGTGTTGTTAATTGTAATTAAAGCACACACCTCTATAAATACTGGCTATACCTGCCAGCAGTAAAGCTCGAGAACGTCGTGCGGAGTGCGTACTTTGTTTTTCTTCTATTANTAACTCACTACCACCGTACTCGGGAGCTAGAATATCAGGCTGTTGGACTTTCAGAACTGATGGCAGCAGTGGGGATGGATCTCTGGACCGGCTCCTCCAGCCTGTCAGCACAGGCCTCTCGCCCAGGAAGAGGACCACCAGCCAGTGCAAGTCGGAGCCGCCCCTCCTGCGCACGTCCAAACGGACCATCTACACCGCCGGCCGGCCCCCTTGGTACAACGAGCATGGAACTCAGTCCAAGGAGGCCTTTGCTATTGGCTTATGTGGCGGCAGCGCTTCAGGGAAGACGACTGTGGCCAGGAAAATAATCGAAGCTCTGGATGTCCCCTGGGTCGTCCTGCTGTCCATGGACTCTTTTTACAAGGTC ] [+] EMBL CA332722 [ CAGCAGTGGGGATGGATCTCTGGACCGGCTCCTCCAGCCTGTCAGCACAGGCCTCTCGCCCAGGAAGAGGACCACCAGCCAGTGCAAGTCGGAGCCGCCCCTCCTGCGCACGTCCAAACGGACCATCTACACCGCCGGCCGGCCCCCTTGGTACAACGAGCATGGAACTCAGTCCAAGGAGGCCTTTGCTATTGGCTTATGTGGCGGCAGCGCTTCAGGGAAGACGACTGTGGCCAGGAAAATAATCGAAGCTCTGGATGTCCCCTGGGTCGTCCTGCTGTCCATGGACTCTTTTTACAAGGTCCTGTCTGCTGAAGAGCAGATCCGAGCTGCCAGCAACGACTACAACTTTGACCACCCTGACGCCTTTGACTTCGACCTGCTGACGGACACCCTGCGCAAGCTCAAACAGGGGAAGAGTGTGAAAATTCCCGTGTACGACTTCACGACTCACGGCAGGCAGAAGGAGTGGAAAACTGTATATGGAGCCAGTGTTATCATCTTTGAGGGAATCATGGCCTTCACAGATAAAAAGCTCCTACAGTTGCTGGATATGAAGATATTTGTGGACACAGACTCCGACATCCGGCTGGTCCGCAGGCTGAGGAGGGATATTACAGA] consensusID : consensus_1850#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 444 fasta sequence [GCAAAGATGGAGAACGAAGAAAAAACTACTACTTTGACCAACAGCAGTGGGGATGGATCTCTGGACCGGCTCCTCCAGCCTGTCAGCACAGGCCTCTCGCCCAGGAAGAGGACCACCAGCCAGTGCAAGTCGGAGCCGCCCCTCCTGCGCACGTCCAAACGGACCATCTACACCGCCGGCCGGCCCCCTTGGTACAACGAGCATGGAACTCAGTCCAAGGAGGCCTTTGCTATTGGCTTATGTGGCGGCAGCGCTTCAGGGAAGACGACTGTGGCCAGGAAAATAATCGAAGCTCTGGATGTCCCCTGGGTCGTCCTGCTGTCCATGGACTCTTTTTACAAGGTCCTGTCTGCTGAAGAGCAGATCCGAGCTGCCAGCAACGACTACAACTTTGACCACCCTGACGCCTTTGACTTCGACCTGCTGACGGACACCCTGCGCAAG] [+] EMBL CA590911 [GCAAAGATGGAGAACGAAGAAAAAACTACTACTTTGACCAACAGCAGTGGGGATGGATCTCTGGACCGGCTCCTCCAGCCTGTCAGCACAGGCCTCTCGCCCAGGAAGAGGACCACCAGCCAGTGCAAGTCGGAGCCGCCCCTCCTGCGCACGTCCAAACGGACCATCTACACCGCCGGCCGGCCCCCTTGGTACAACGAGCATGGAACTCAGTCCAAGGAGGCCTTTGCTATTGGCTTATGTGGCGGCAGCGCTTCAGGGAAGACGACTGTGGCCAGGAAAATAATCGAAGCTCTGGATGTCCCCTGGGTCGTCCTGCTGTCCATGGACTCTTTTTACAAGGTCCTGTCTGCTGAAGAGCAGATCCGAGCTGCCAGCAACGACTACAACTTTGACCACCCTGACGCCTTTGACTTCGACCTGCTGACGGACACCCTGCGCAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1850#0 CCAAACAGAAAGCTAAAGAGCAGTTTCCTTTTCTCATCTAATCTAACTCTCCTCTATGTT 60 consensus_1850#1 ------------------------------------------------------------ consensus_1850#0 GCCCAACATCTGTCTGTGCTTTGGACCGGAGAGCAGTGTTGTTAATTGTAATTAAAGCAC 120 consensus_1850#1 ------------------------------------------------------------ consensus_1850#0 ACACCTCTATAAATACTGGCTATACCTGCCAGCAGTAAAGCTCGAGAACGTCGTGCGGAG 180 consensus_1850#1 ------------------------------------------------------------ consensus_1850#0 TGCGTACTTTGTTTTTCTTCTATTANTAACTCACTACCACCGTACTCGGGAGCTAGAATA 240 consensus_1850#1 --------------------------------------GCAAAGATGGAGAAC--GAAGA 20 * * * ** * *** * consensus_1850#0 TCAGGCTGTTGGACTTTCAGAACTGATGGCAGCAGTGGGGATGGATCTCTGGACCGGCTC 300 consensus_1850#1 AAAAACTACT--ACTTT---GACCAA---CAGCAGTGGGGATGGATCTCTGGACCGGCTC 72 * ** * ***** ** * ******************************* consensus_1850#0 CTCCAGCCTGTCAGCACAGGCCTCTCGCCCAGGAAGAGGACCACCAGCCAGTGCAAGTCG 360 consensus_1850#1 CTCCAGCCTGTCAGCACAGGCCTCTCGCCCAGGAAGAGGACCACCAGCCAGTGCAAGTCG 132 ************************************************************ consensus_1850#0 GAGCCGCCCCTCCTGCGCACGTCCAAACGGACCATCTACACCGCCGGCCGGCCCCCTTGG 420 consensus_1850#1 GAGCCGCCCCTCCTGCGCACGTCCAAACGGACCATCTACACCGCCGGCCGGCCCCCTTGG 192 ************************************************************ consensus_1850#0 TACAACGAGCATGGAACTCAGTCCAAGGAGGCCTTTGCTATTGGCTTATGTGGCGGCAGC 480 consensus_1850#1 TACAACGAGCATGGAACTCAGTCCAAGGAGGCCTTTGCTATTGGCTTATGTGGCGGCAGC 252 ************************************************************ consensus_1850#0 GCTTCAGGGAAGACGACTGTGGCCAGGAAAATAATCGAAGCTCTGGATGTCCCCTGGGTC 540 consensus_1850#1 GCTTCAGGGAAGACGACTGTGGCCAGGAAAATAATCGAAGCTCTGGATGTCCCCTGGGTC 312 ************************************************************ consensus_1850#0 GTCCTGCTGTCCATGGACTCTTTTTACAAGGTCCTGTCTGCTGAAGAGCAGATCCGAGCT 600 consensus_1850#1 GTCCTGCTGTCCATGGACTCTTTTTACAAGGTCCTGTCTGCTGAAGAGCAGATCCGAGCT 372 ************************************************************ consensus_1850#0 GCCAGCAACGACTACAACTTTGACCACCCTGACGCCTTTGACTTCGACCTGCTGACGGAC 660 consensus_1850#1 GCCAGCAACGACTACAACTTTGACCACCCTGACGCCTTTGACTTCGACCTGCTGACGGAC 432 ************************************************************ consensus_1850#0 ACCCTGCGCAAGCTCAAACAGGGGAAGAGTGTGAAAATTCCCGTGTACGACTTCACGACT 720 consensus_1850#1 ACCCTGCGCAAG------------------------------------------------ 444 ************ consensus_1850#0 CACGGCAGGCAGAAGGAGTGGAAAACTGTATATGGAGCCAGTGTTATCATCTTTGAGGGA 780 consensus_1850#1 ------------------------------------------------------------ consensus_1850#0 ATCATGGCCTTCACAGATAAAAAGCTCCTACAGTTGCTGGATATGAAGATATTTGTGGAC 840 consensus_1850#1 ------------------------------------------------------------ consensus_1850#0 ACAGACTCCGACATCCGGCTGGTCCGCAGGCTGAGGAGGGATATTACAGA 890 consensus_1850#1 -------------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |