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Takifugu rubripes
cluster # 1853 cluster # 1853       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1853#0 length = 622 sequences # 2  
consensus_1853#1 length = 279 sequences # 1  

consensusID : consensus_1853#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 622
fasta sequence
                              [GCCTTCCGTCGCGAACACAGAAATGGCTAGCGTGGTGCTGGAGTTTAAGCCGTCTGCCGGCGACTGTGAGCCACAGAATCGCCCTGTCCTGATTATTGGACAGCTGGTGAACCTGCAGAAAGTAGGTTGGAATCAAATCAAAGGAAAGCTGCAGCCCGGAGTCAGCAAAGAGACTTGGCAGGCAGCTCTCGGTGCTTTGAATCCGAACCCCACAGACAGCTGCCCCCTGTACCTGAACCATGCCGCCGTGGCTGCGCTGCCCTCCCGGGTCAGCAGGCACAACAGCCCTTCCTCTGCACACTTTGGAACTCGTCTGGATCGTTCCTGCCTGCCAGGAGGGAGCAATCGCTGCATTGTGATGGTTTGTGAACACTCGGATGTGTTCGCCTCCTCCTGTGCCATCGCCAGGGCCTTCCCTCTTTTTACCCGCCGTTCCTCCTCCTCACGCAGGGCAGAGAAGAAGAACGTCACCGTGGAGTTTCTGATTGTTGAACAGGACAGCAGCACCCTGGATGCTGCAGAGCTAGAGTGTCTCTCCAACGCTGCTGATGGAGTCCGCCTGGCGGCGCGCATCGTGGACACGCCGTGTAACGAGATGAATACGGATCACTTCTTAGACGAA]

[+] EMBL FR0063446            [GCCTTCCGTCGCGAACACAGAAATGGCTAGCGTGGTGCTGGAGTTTAAGCCGTCTGCCGGCGACTGTGAGCCACAGAATCGCCCTGTCCTGATTATTGGACAGCTGGTGAACCTGCAGAAAGTAGGTTGGAATCAAATCAAAGGAAAGCTGCAGCCCGGAGTCAGCAAAGAGACTTGGCAGGCAGCTCTCGGTGCTTTGAATCCGAACCCCACAGACAGCTGCCCCCTGTACCTGAACCATGCCGCCGTGGCTGCGCTGCCCTCCCGGGTCAGCAGGCACAACAGCCCTTCCTCTGCACACTTTGGAACTCGTCTGGATCGTTCCTGCCTGCCAGGAGGGAGCAATCGCTGCATTGTGATGGTTTGTGAACACTCGGATGTGTTCGCCTCCTCCTGTGCCATCGCCAGGGCCTTCCCTTTTTTTACCCGCCGTTCTTCC                                                                                                                                                                                       ]
[+] EMBL BU808218             [               CACAGAAATGGCTAGCGTGGTGCTGGAGTTTAAGCCGTCTGCCGGCGACTCTGAGCCACAGAATCGCCCTGTCCTGATTATTGGACAGCTGGTGAACCTGCAGAAAGTAGGTTGGAATCAAATCAAAGGAAAGCTGCAGCCCGGAGTCAGCAAAGAGACTTGGCAGGCAGCTCTCGGTGCTTTGAATCCGAACCCCACAGACAGCTGCCCCCTGTACCTGAACCATGCCGCCGTGGCTGCGCTGCCCTCCCGGGTCAGCAGGCACAACAGCCCTTCCTCTGCACACTTTGTAACTCGTCTGGTTCGTTCCTGCCTGCCAGGAGGGAGCAATCGCTGCATTGTGATGGTTTGTGAACACTCGGATGTGTTCGCCTCCTCCTGTGCCATCGCCAGGGCCTTCCCTCTTTTTACCCGCCGTTCCTCCTCCTCACGCAGGGCAGAGAAGAAGAACGTCACCGTGGAGTTTCTGATTGTTGAACAGGACAGCAGCACCCTGGATGCTGCAGAGCTAGAGTGTCTCTCCAACGCTGCTGATGGAGTCCGCCTGGCGGCGCGCATCGTGGACACGCCGTGTAACGAGATGAATACGGATCACTTCTTAGACGAA]


>consensus_1853#0 GCCTTCCGTCGCGAACACAGAAATGGCTAGCGTGGTGCTGGAGTTTAAGCCGTCTGCCGG CGACTGTGAGCCACAGAATCGCCCTGTCCTGATTATTGGACAGCTGGTGAACCTGCAGAA AGTAGGTTGGAATCAAATCAAAGGAAAGCTGCAGCCCGGAGTCAGCAAAGAGACTTGGCA GGCAGCTCTCGGTGCTTTGAATCCGAACCCCACAGACAGCTGCCCCCTGTACCTGAACCA TGCCGCCGTGGCTGCGCTGCCCTCCCGGGTCAGCAGGCACAACAGCCCTTCCTCTGCACA CTTTGGAACTCGTCTGGATCGTTCCTGCCTGCCAGGAGGGAGCAATCGCTGCATTGTGAT GGTTTGTGAACACTCGGATGTGTTCGCCTCCTCCTGTGCCATCGCCAGGGCCTTCCCTCT TTTTACCCGCCGTTCCTCCTCCTCACGCAGGGCAGAGAAGAAGAACGTCACCGTGGAGTT TCTGATTGTTGAACAGGACAGCAGCACCCTGGATGCTGCAGAGCTAGAGTGTCTCTCCAA CGCTGCTGATGGAGTCCGCCTGGCGGCGCGCATCGTGGACACGCCGTGTAACGAGATGAA TACGGATCACTTCTTAGACGAA



consensusID : consensus_1853#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 279
fasta sequence
                              [TTTTAATTACGCGTTTTCAAATCCATTTTGAGAAACCGTTAAATGCGTCGCGGCTGAAGGCTTCTCTTCTCTTTAGTGTCTCTCCAACGCTGCTGATGGAGTCCGCCTGGCGGCGCGCATCGTGGACACGCCATGTAACGAGATGAATACGGATCACTTCTTAGACGAAATCAGGGCTGTGGNGACTGAACTCGGAATTACTCCAGTGATCATTCGTGGTGAAGAACTGAAACAAANAGGGTTTGGAGGTATTTACGGAGTTGNGAAGGCAGCAGAACA]

[+] EMBL FR0058120            [TTTTAATTACGCGTTTTCAAATCCATTTTGAGAAACCGTTAAATGCGTCGCGGCTGAAGGCTTCTCTTCTCTTTAGTGTCTCTCCAACGCTGCTGATGGAGTCCGCCTGGCGGCGCGCATCGTGGACACGCCATGTAACGAGATGAATACGGATCACTTCTTAGACGAAATCAGGGCTGTGGNGACTGAACTCGGAATTACTCCAGTGATCATTCGTGGTGAAGAACTGAAACAAANAGGGTTTGGAGGTATTTACGGAGTTGNGAAGGCAGCAGAACA]


>consensus_1853#1 TTTTAATTACGCGTTTTCAAATCCATTTTGAGAAACCGTTAAATGCGTCGCGGCTGAAGG CTTCTCTTCTCTTTAGTGTCTCTCCAACGCTGCTGATGGAGTCCGCCTGGCGGCGCGCAT CGTGGACACGCCATGTAACGAGATGAATACGGATCACTTCTTAGACGAAATCAGGGCTGT GGNGACTGAACTCGGAATTACTCCAGTGATCATTCGTGGTGAAGAACTGAAACAAANAGG GTTTGGAGGTATTTACGGAGTTGNGAAGGCAGCAGAACA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1853#0      GCCTTCCGTCGCGAACACAGAAATGGCTAGCGTGGTGCTGGAGTTTAAGCCGTCTGCCGG 60
consensus_1853#1      ------------------------------------------------------------
                                                                                  

consensus_1853#0      CGACTGTGAGCCACAGAATCGCCCTGTCCTGATTATTGGACAGCTGGTGAACCTGCAGAA 120
consensus_1853#1      ------------------------------------------------------------
                                                                                  

consensus_1853#0      AGTAGGTTGGAATCAAATCAAAGGAAAGCTGCAGCCCGGAGTCAGCAAAGAGACTTGGCA 180
consensus_1853#1      ------------------------------------------------------------
                                                                                  

consensus_1853#0      GGCAGCTCTCGGTGCTTTGAATCCGAACCCCACAGACAGCTGCCCCCTGTACCTGAACCA 240
consensus_1853#1      --------------TTTTAATTACGCGTTTT-CAAAT--CCATTTTGAGAAACCGTTAAA 43
                                     *** * * **       ** *   *        * * * *    *

consensus_1853#0      TGCCGCCGTGGCTGCGCTGCCCTCCCGGGTCAGCAGGCACAACAGCCCTTCCTCTGCACA 300
consensus_1853#1      TGC-GTCGCGGCTGAA--GGCTTCTCTTCTCTTTAGT-------GTCTCTCCAACGCTGC 93
                      *** * ** *****    * * ** *   **   **        * *  ***   **   

consensus_1853#0      CTTTGGAACTCGTCTGGATCGTTCCTGCCTGCCAGGAGGGAGCAATCGCTGCATTGTGAT 360
consensus_1853#1      TGATGGAGTCCGCCTGG-------CGGCGCGCATCGTGGACACG--CCATGTAACGAGAT 144
                         ****   ** ****       * **  **   * **   *   *  ** *  * ***

consensus_1853#0      GGTTTGTGAACACTCGGATGTGTTCGCCTCCTCCTGTGCCATCGCCAGGGCCTTCCCTCT 420
consensus_1853#1      GAATACGGATCACT------TCTTAGACGAAATCAGGGCTGT----GGNGACTGAACTCG 194
                      *  *   ** ****      * ** * *     * * **  *     * * **   *** 

consensus_1853#0      TTTTACCCGCCGTTCCTCCTCCTCACGCAGGGCAGAGAAGAAGAACGTCACCGTGGAGTT 480
consensus_1853#1      GAATTACTCCAGTGATCATTCGTGGTGAAGAACTGAAACAAANAGGGTTTGGAGGTATTT 254
                         *  *  * **      ** *   * **  * ** *  ** *  **      * * **

consensus_1853#0      TCTGATTGTTGAACAGGACAGCAGCACCCTGGATGCTGCAGAGCTAGAGTGTCTCTCCAA 540
consensus_1853#1      ACGGA--GTTGNG-AAGGCAGCAGAACA-------------------------------- 279
                       * **  ****   * * ****** **                                 

consensus_1853#0      CGCTGCTGATGGAGTCCGCCTGGCGGCGCGCATCGTGGACACGCCGTGTAACGAGATGAA 600
consensus_1853#1      ------------------------------------------------------------
                                                                                  

consensus_1853#0      TACGGATCACTTCTTAGACGAA 622
consensus_1853#1      ----------------------
                                            




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)