These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1853#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 622 fasta sequence [GCCTTCCGTCGCGAACACAGAAATGGCTAGCGTGGTGCTGGAGTTTAAGCCGTCTGCCGGCGACTGTGAGCCACAGAATCGCCCTGTCCTGATTATTGGACAGCTGGTGAACCTGCAGAAAGTAGGTTGGAATCAAATCAAAGGAAAGCTGCAGCCCGGAGTCAGCAAAGAGACTTGGCAGGCAGCTCTCGGTGCTTTGAATCCGAACCCCACAGACAGCTGCCCCCTGTACCTGAACCATGCCGCCGTGGCTGCGCTGCCCTCCCGGGTCAGCAGGCACAACAGCCCTTCCTCTGCACACTTTGGAACTCGTCTGGATCGTTCCTGCCTGCCAGGAGGGAGCAATCGCTGCATTGTGATGGTTTGTGAACACTCGGATGTGTTCGCCTCCTCCTGTGCCATCGCCAGGGCCTTCCCTCTTTTTACCCGCCGTTCCTCCTCCTCACGCAGGGCAGAGAAGAAGAACGTCACCGTGGAGTTTCTGATTGTTGAACAGGACAGCAGCACCCTGGATGCTGCAGAGCTAGAGTGTCTCTCCAACGCTGCTGATGGAGTCCGCCTGGCGGCGCGCATCGTGGACACGCCGTGTAACGAGATGAATACGGATCACTTCTTAGACGAA] [+] EMBL FR0063446 [GCCTTCCGTCGCGAACACAGAAATGGCTAGCGTGGTGCTGGAGTTTAAGCCGTCTGCCGGCGACTGTGAGCCACAGAATCGCCCTGTCCTGATTATTGGACAGCTGGTGAACCTGCAGAAAGTAGGTTGGAATCAAATCAAAGGAAAGCTGCAGCCCGGAGTCAGCAAAGAGACTTGGCAGGCAGCTCTCGGTGCTTTGAATCCGAACCCCACAGACAGCTGCCCCCTGTACCTGAACCATGCCGCCGTGGCTGCGCTGCCCTCCCGGGTCAGCAGGCACAACAGCCCTTCCTCTGCACACTTTGGAACTCGTCTGGATCGTTCCTGCCTGCCAGGAGGGAGCAATCGCTGCATTGTGATGGTTTGTGAACACTCGGATGTGTTCGCCTCCTCCTGTGCCATCGCCAGGGCCTTCCCTTTTTTTACCCGCCGTTCTTCC ] [+] EMBL BU808218 [ CACAGAAATGGCTAGCGTGGTGCTGGAGTTTAAGCCGTCTGCCGGCGACTCTGAGCCACAGAATCGCCCTGTCCTGATTATTGGACAGCTGGTGAACCTGCAGAAAGTAGGTTGGAATCAAATCAAAGGAAAGCTGCAGCCCGGAGTCAGCAAAGAGACTTGGCAGGCAGCTCTCGGTGCTTTGAATCCGAACCCCACAGACAGCTGCCCCCTGTACCTGAACCATGCCGCCGTGGCTGCGCTGCCCTCCCGGGTCAGCAGGCACAACAGCCCTTCCTCTGCACACTTTGTAACTCGTCTGGTTCGTTCCTGCCTGCCAGGAGGGAGCAATCGCTGCATTGTGATGGTTTGTGAACACTCGGATGTGTTCGCCTCCTCCTGTGCCATCGCCAGGGCCTTCCCTCTTTTTACCCGCCGTTCCTCCTCCTCACGCAGGGCAGAGAAGAAGAACGTCACCGTGGAGTTTCTGATTGTTGAACAGGACAGCAGCACCCTGGATGCTGCAGAGCTAGAGTGTCTCTCCAACGCTGCTGATGGAGTCCGCCTGGCGGCGCGCATCGTGGACACGCCGTGTAACGAGATGAATACGGATCACTTCTTAGACGAA] consensusID : consensus_1853#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 279 fasta sequence [TTTTAATTACGCGTTTTCAAATCCATTTTGAGAAACCGTTAAATGCGTCGCGGCTGAAGGCTTCTCTTCTCTTTAGTGTCTCTCCAACGCTGCTGATGGAGTCCGCCTGGCGGCGCGCATCGTGGACACGCCATGTAACGAGATGAATACGGATCACTTCTTAGACGAAATCAGGGCTGTGGNGACTGAACTCGGAATTACTCCAGTGATCATTCGTGGTGAAGAACTGAAACAAANAGGGTTTGGAGGTATTTACGGAGTTGNGAAGGCAGCAGAACA] [+] EMBL FR0058120 [TTTTAATTACGCGTTTTCAAATCCATTTTGAGAAACCGTTAAATGCGTCGCGGCTGAAGGCTTCTCTTCTCTTTAGTGTCTCTCCAACGCTGCTGATGGAGTCCGCCTGGCGGCGCGCATCGTGGACACGCCATGTAACGAGATGAATACGGATCACTTCTTAGACGAAATCAGGGCTGTGGNGACTGAACTCGGAATTACTCCAGTGATCATTCGTGGTGAAGAACTGAAACAAANAGGGTTTGGAGGTATTTACGGAGTTGNGAAGGCAGCAGAACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1853#0 GCCTTCCGTCGCGAACACAGAAATGGCTAGCGTGGTGCTGGAGTTTAAGCCGTCTGCCGG 60 consensus_1853#1 ------------------------------------------------------------ consensus_1853#0 CGACTGTGAGCCACAGAATCGCCCTGTCCTGATTATTGGACAGCTGGTGAACCTGCAGAA 120 consensus_1853#1 ------------------------------------------------------------ consensus_1853#0 AGTAGGTTGGAATCAAATCAAAGGAAAGCTGCAGCCCGGAGTCAGCAAAGAGACTTGGCA 180 consensus_1853#1 ------------------------------------------------------------ consensus_1853#0 GGCAGCTCTCGGTGCTTTGAATCCGAACCCCACAGACAGCTGCCCCCTGTACCTGAACCA 240 consensus_1853#1 --------------TTTTAATTACGCGTTTT-CAAAT--CCATTTTGAGAAACCGTTAAA 43 *** * * ** ** * * * * * * * consensus_1853#0 TGCCGCCGTGGCTGCGCTGCCCTCCCGGGTCAGCAGGCACAACAGCCCTTCCTCTGCACA 300 consensus_1853#1 TGC-GTCGCGGCTGAA--GGCTTCTCTTCTCTTTAGT-------GTCTCTCCAACGCTGC 93 *** * ** ***** * * ** * ** ** * * *** ** consensus_1853#0 CTTTGGAACTCGTCTGGATCGTTCCTGCCTGCCAGGAGGGAGCAATCGCTGCATTGTGAT 360 consensus_1853#1 TGATGGAGTCCGCCTGG-------CGGCGCGCATCGTGGACACG--CCATGTAACGAGAT 144 **** ** **** * ** ** * ** * * ** * * *** consensus_1853#0 GGTTTGTGAACACTCGGATGTGTTCGCCTCCTCCTGTGCCATCGCCAGGGCCTTCCCTCT 420 consensus_1853#1 GAATACGGATCACT------TCTTAGACGAAATCAGGGCTGT----GGNGACTGAACTCG 194 * * ** **** * ** * * * * ** * * * ** *** consensus_1853#0 TTTTACCCGCCGTTCCTCCTCCTCACGCAGGGCAGAGAAGAAGAACGTCACCGTGGAGTT 480 consensus_1853#1 GAATTACTCCAGTGATCATTCGTGGTGAAGAACTGAAACAAANAGGGTTTGGAGGTATTT 254 * * * ** ** * * ** * ** * ** * ** * * ** consensus_1853#0 TCTGATTGTTGAACAGGACAGCAGCACCCTGGATGCTGCAGAGCTAGAGTGTCTCTCCAA 540 consensus_1853#1 ACGGA--GTTGNG-AAGGCAGCAGAACA-------------------------------- 279 * ** **** * * ****** ** consensus_1853#0 CGCTGCTGATGGAGTCCGCCTGGCGGCGCGCATCGTGGACACGCCGTGTAACGAGATGAA 600 consensus_1853#1 ------------------------------------------------------------ consensus_1853#0 TACGGATCACTTCTTAGACGAA 622 consensus_1853#1 ---------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |