These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1854#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 631 fasta sequence [GGGTGCCGAAGCCGCAAACAGGCCTGTTCGGTTCGGTCCACCTGCGTGCCGCTCCAGTGGACGGTGAGGGAGAGAGAGCCTGCACCTTGACAGCTAATATTAGCCTACCAGCTAATTAATTCGCCGCAAACCGCACCAACACAAAATGAGCGGCCAGCCGAACCCTTTCGTGGACACCTCGTCGACTGATGAAGACTACTTCCTCTTCACCTCGGAGTCAGTTGGAGAAGGACACCCAGACAAGATTTGTGACCAGATCAGCGATGCCGTGTTGGACGCACATCTGGAGCAAGACCCCAACGCTAAAGTAGCATGTGAGACGGTCGCTAAGACGGGGATGATCCTGCTGGTGGGGGAAATCACCTCCAGGGCTGTTGTTGACTATCAGAAGATTGTCAGGGATGCAATCAAGCATATTGGTTACGACGACTCCTCCAAAGGATTTGATTATAAGACCTGTAACGTGCTGGTGGCGTTGGAGCAGCAGTCCCCCGAAATTGCTCAAGGTGTTCACCTGGATCGGAAGGAGGAGGGAGGGGGAGCCGGTGACCAGGGGCTGATGTTCGGCTACGCCACCGACGAGACCGAGGAGTGCATGCCCCTCACCATTGTCCTGGCTCACAAGCTCAAC] [+] EMBL BU806081 [GGGTGCCGAAGCCGCAAACAGGCCTGTTCGGTTCGGTCCACCTGCGTGCCGCTCCAGTGGACGGTGAGGGAGAGAGAGCCTGCACCTTGACAGCTAATATTAGCCTACCAGCTAATTAATTCGCCGCAAACCGCACCAACACAAAATGAGCGGCCAGCCGAACCCTTTCGTGGACACCTCGTCGACTGATGAAGACTACTTCCTCTTCTCTTCTGAGTCAGTTGGAGAAGGACACCCAGACAAGATTTGTGACCAGATCAGCGATGCCGTGTTGGACGCACATCTGGAGCAAGACCCCAACGCTAAAGTAGCATGTGAGACGGTCGCTAAGACGGGGATGATCCTGCTGGTGGGGGAAATCACCTCCAGGGCTGTTGTTGACTATCAAAAGATTGTCAGGGATGCAATCAAGCATATTGGTTACGACGACTCCTCCAAAGGATTTGATTATAAGACCTGTAACGTGCTGGTGGCGTTGGAGCAGCAGTCCCCCGAAATTGCTCAAGGTGTTCACCTGAATCAGAAGGAAGAGGGAAGTTGt ] [+] EMBL CA588913 [ CGAAGCCGCAAACAGGCCTGTTCGGTTCGGTCCACCTGCGTGCCGCTCCAGTGGACGGTGAGGGAGAGAGAGCCTGCACCTTGACAGCTAATATTAGCCTACCAGCTAATTAATTCGCCGCAAACCGCACCAACACAAAATGAGCGGCCAGCCGAACCCTTTCGTGGACACCTCGTCGACTGATGAAGACTACTTCCTCTTCACCTCGGAGTCAGTTGGAGAAGGACACCCAGACAAGATTTGTGACCAGATCAGCGATGCCGTGTTGGACGCACATCTGGAGCAAGACCCCAACGCTAAAGTAGCATGTGAGACGGTCGCTAAGACGGGGATGATCCTGCTGGTGGGGGAAATCACCTCCAGGGCTGTTGTTGACTATCAGAAGATTGTCAGGGATGCAATCAAGCATATTGGTTACGACGACTCCTCCAAAGGATTTGATTATAAGACCTGTAACGTGCTGGTGGCGTTGGAGCAGCAGTCCCCCGACATTGCTCAAGGTGTTCACCTGGATCGGAAGGAGGAGGACGTGGGAGCCGGTGACCAGGGGCTGATGTTCGGCTACGCCACCGACGAGACCGAGGAGTGCATGCCCCTCACCATTGTCCTGGCTCACAAGCTCAAC] consensusID : consensus_1854#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 581 fasta sequence [ACAACAACATTGGCTGACAGTCATGGCTGGAATTCACCAAACTGGGAGTTCTGCCACATAAATAAACGGCTCGGCCGAACACTTTCTATATCGCCGGGGTGCCGAAGCCGCAAACAGGCCTGTTCGGTTCGGTCCACCTGCGTGCCGCTCCAGTGGACGGTGAGGGAGAGAGAGCCTGCACCTTGACAGCTAATATTAGCCTACCAGCTAATTAATTCGCCGCAAACCGCACCAACACAAAATGAGCGGCCAGCCGAACCCTTTCGTGGACACCTCGTCGACTGATGAAGACTACTTCCTCTTCACCTCGGAGTCAGTTGGAGAAGGACACCCAGACAAGATTTGTGACCAGATCAGCGATGCCGTGTTGGACGCACATCTGGAGCAAGACCCCAACGCTAAAGTAGCATGTGGTAGGAGATGGTTTCATTTCTTTCAGGCACTTTAAATGACACTTGATTGCTTTTATTTGTTGGTAATTTTCCTGCTTATTTGTCTTTCCGAGAGGACTTTGATGGACCCCGCTCCTGAATGAGCCGACATCAGACATCCGGTCCGATTTATCTTTTCTTTAGGAAAAT] [+] EMBL CA590721 [ACAACAACATTGGCTGACAGTCATGGCTGGAATTCACCAAACTGGGAGTTCTGCCACATAAATAAACGGCTCGGCCGAACACTTTCTATATCGCCGGGGTGCCGAAGCCGCAAACAGGCCTGTTCGGTTCGGTCCACCTGCGTGCCGCTCCAGTGGACGGTGAGGGAGAGAGAGCCTGCACCTTGACAGCTAATATTAGCCTACCAGCTAATTAATTCGCCGCAAACCGCACCAACACAAAATGAGCGGCCAGCCGAACCCTTTCGTGGACACCTCGTCGACTGATGAAGACTACTTCCTCTTCACCTCGGAGTCAGTTGGAGAAGGACACCCAGACAAGATTTGTGACCAGATCAGCGATGCCGTGTTGGACGCACATCTGGAGCAAGACCCCAACGCTAAAGTAGCATGTGGTAGGAGATGGTTTCATTTCTTTCAGGCACTTTAAATGACACTTGATTGCTTTTATTTGTTGGTAATTTTCCTGCTTATTTGTCTTTCCGAGAGGACTTTGATGGACCCCGCTCCTGAATGAGCCGACATCAGACATCCGGTCCGATTTATCTTTTCTTTAGGAAAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1854#0 ------------------------------------------------------------ consensus_1854#1 ACAACAACATTGGCTGACAGTCATGGCTGGAATTCACCAAACTGGGAGTTCTGCCACATA 60 consensus_1854#0 ------------------------------------GGGTGCCGAAGCCGCAAACAGGCC 24 consensus_1854#1 AATAAACGGCTCGGCCGAACACTTTCTATATCGCCGGGGTGCCGAAGCCGCAAACAGGCC 120 ************************ consensus_1854#0 TGTTCGGTTCGGTCCACCTGCGTGCCGCTCCAGTGGACGGTGAGGGAGAGAGAGCCTGCA 84 consensus_1854#1 TGTTCGGTTCGGTCCACCTGCGTGCCGCTCCAGTGGACGGTGAGGGAGAGAGAGCCTGCA 180 ************************************************************ consensus_1854#0 CCTTGACAGCTAATATTAGCCTACCAGCTAATTAATTCGCCGCAAACCGCACCAACACAA 144 consensus_1854#1 CCTTGACAGCTAATATTAGCCTACCAGCTAATTAATTCGCCGCAAACCGCACCAACACAA 240 ************************************************************ consensus_1854#0 AATGAGCGGCCAGCCGAACCCTTTCGTGGACACCTCGTCGACTGATGAAGACTACTTCCT 204 consensus_1854#1 AATGAGCGGCCAGCCGAACCCTTTCGTGGACACCTCGTCGACTGATGAAGACTACTTCCT 300 ************************************************************ consensus_1854#0 CTTCACCTCGGAGTCAGTTGGAGAAGGACACCCAGACAAGATTTGTGACCAGATCAGCGA 264 consensus_1854#1 CTTCACCTCGGAGTCAGTTGGAGAAGGACACCCAGACAAGATTTGTGACCAGATCAGCGA 360 ************************************************************ consensus_1854#0 TGCCGTGTTGGACGCACATCTGGAGCAAGACCCCAACGCTAAAGTAGCATGTGAGACGGT 324 consensus_1854#1 TGCCGTGTTGGACGCACATCTGGAGCAAGACCCCAACGCTAAAGTAGCATGTGGTA---- 416 ***************************************************** * consensus_1854#0 CGCTAAGACGGGGATGATCCTGCTGGTGGGGGAAATCACCTCCAGGGCTGTTGTTGACTA 384 consensus_1854#1 ---------GGAGATGGTTTCATTTCTTTCAGGCACT--TTAAATGACACTTGATTGCTT 465 ** **** * * * * * * * * * *** * ** consensus_1854#0 TCAGAAGATTGTCAGGGATGCAATCAAGCATATTGGTTACGACGACTCCTCCAAAGGATT 444 consensus_1854#1 TTAT----TTGTTGGTAATTT--TCCTGCTTATTTGT--------CTTTCCGAGAGGACT 511 * * **** * ** ** ** **** ** ** * * **** * consensus_1854#0 TGATTATAAGACCTGTAACGTGCTGGTGGCGTTGGAGCAGCAGTCCCCCGAAATTGCTCA 504 consensus_1854#1 T--TGATGGACCCCGC----TCCTGAATGAGCCGA--CATCAGACATCCGGT-CCGATTT 562 * * ** ** * * *** * * * ** *** * *** * * consensus_1854#0 AGGTGTTCACCTGGATCGGAAGGAGGAGGGAGGGGGAGCCGGTGACCAGGGGCTGATGTT 564 consensus_1854#1 ATCTTTTCTTTAGGAAAAT----------------------------------------- 581 * * *** *** consensus_1854#0 CGGCTACGCCACCGACGAGACCGAGGAGTGCATGCCCCTCACCATTGTCCTGGCTCACAA 624 consensus_1854#1 ------------------------------------------------------------ consensus_1854#0 GCTCAAC 631 consensus_1854#1 ------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |