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Takifugu rubripes
cluster # 1854 cluster # 1854       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1854#0 length = 631 sequences # 2  
consensus_1854#1 length = 581 sequences # 1  

consensusID : consensus_1854#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 631
fasta sequence
                              [GGGTGCCGAAGCCGCAAACAGGCCTGTTCGGTTCGGTCCACCTGCGTGCCGCTCCAGTGGACGGTGAGGGAGAGAGAGCCTGCACCTTGACAGCTAATATTAGCCTACCAGCTAATTAATTCGCCGCAAACCGCACCAACACAAAATGAGCGGCCAGCCGAACCCTTTCGTGGACACCTCGTCGACTGATGAAGACTACTTCCTCTTCACCTCGGAGTCAGTTGGAGAAGGACACCCAGACAAGATTTGTGACCAGATCAGCGATGCCGTGTTGGACGCACATCTGGAGCAAGACCCCAACGCTAAAGTAGCATGTGAGACGGTCGCTAAGACGGGGATGATCCTGCTGGTGGGGGAAATCACCTCCAGGGCTGTTGTTGACTATCAGAAGATTGTCAGGGATGCAATCAAGCATATTGGTTACGACGACTCCTCCAAAGGATTTGATTATAAGACCTGTAACGTGCTGGTGGCGTTGGAGCAGCAGTCCCCCGAAATTGCTCAAGGTGTTCACCTGGATCGGAAGGAGGAGGGAGGGGGAGCCGGTGACCAGGGGCTGATGTTCGGCTACGCCACCGACGAGACCGAGGAGTGCATGCCCCTCACCATTGTCCTGGCTCACAAGCTCAAC]

[+] EMBL BU806081             [GGGTGCCGAAGCCGCAAACAGGCCTGTTCGGTTCGGTCCACCTGCGTGCCGCTCCAGTGGACGGTGAGGGAGAGAGAGCCTGCACCTTGACAGCTAATATTAGCCTACCAGCTAATTAATTCGCCGCAAACCGCACCAACACAAAATGAGCGGCCAGCCGAACCCTTTCGTGGACACCTCGTCGACTGATGAAGACTACTTCCTCTTCTCTTCTGAGTCAGTTGGAGAAGGACACCCAGACAAGATTTGTGACCAGATCAGCGATGCCGTGTTGGACGCACATCTGGAGCAAGACCCCAACGCTAAAGTAGCATGTGAGACGGTCGCTAAGACGGGGATGATCCTGCTGGTGGGGGAAATCACCTCCAGGGCTGTTGTTGACTATCAAAAGATTGTCAGGGATGCAATCAAGCATATTGGTTACGACGACTCCTCCAAAGGATTTGATTATAAGACCTGTAACGTGCTGGTGGCGTTGGAGCAGCAGTCCCCCGAAATTGCTCAAGGTGTTCACCTGAATCAGAAGGAAGAGGGAAGTTGt                                                                                          ]
[+] EMBL CA588913             [      CGAAGCCGCAAACAGGCCTGTTCGGTTCGGTCCACCTGCGTGCCGCTCCAGTGGACGGTGAGGGAGAGAGAGCCTGCACCTTGACAGCTAATATTAGCCTACCAGCTAATTAATTCGCCGCAAACCGCACCAACACAAAATGAGCGGCCAGCCGAACCCTTTCGTGGACACCTCGTCGACTGATGAAGACTACTTCCTCTTCACCTCGGAGTCAGTTGGAGAAGGACACCCAGACAAGATTTGTGACCAGATCAGCGATGCCGTGTTGGACGCACATCTGGAGCAAGACCCCAACGCTAAAGTAGCATGTGAGACGGTCGCTAAGACGGGGATGATCCTGCTGGTGGGGGAAATCACCTCCAGGGCTGTTGTTGACTATCAGAAGATTGTCAGGGATGCAATCAAGCATATTGGTTACGACGACTCCTCCAAAGGATTTGATTATAAGACCTGTAACGTGCTGGTGGCGTTGGAGCAGCAGTCCCCCGACATTGCTCAAGGTGTTCACCTGGATCGGAAGGAGGAGGACGTGGGAGCCGGTGACCAGGGGCTGATGTTCGGCTACGCCACCGACGAGACCGAGGAGTGCATGCCCCTCACCATTGTCCTGGCTCACAAGCTCAAC]


>consensus_1854#0 GGGTGCCGAAGCCGCAAACAGGCCTGTTCGGTTCGGTCCACCTGCGTGCCGCTCCAGTGG ACGGTGAGGGAGAGAGAGCCTGCACCTTGACAGCTAATATTAGCCTACCAGCTAATTAAT TCGCCGCAAACCGCACCAACACAAAATGAGCGGCCAGCCGAACCCTTTCGTGGACACCTC GTCGACTGATGAAGACTACTTCCTCTTCACCTCGGAGTCAGTTGGAGAAGGACACCCAGA CAAGATTTGTGACCAGATCAGCGATGCCGTGTTGGACGCACATCTGGAGCAAGACCCCAA CGCTAAAGTAGCATGTGAGACGGTCGCTAAGACGGGGATGATCCTGCTGGTGGGGGAAAT CACCTCCAGGGCTGTTGTTGACTATCAGAAGATTGTCAGGGATGCAATCAAGCATATTGG TTACGACGACTCCTCCAAAGGATTTGATTATAAGACCTGTAACGTGCTGGTGGCGTTGGA GCAGCAGTCCCCCGAAATTGCTCAAGGTGTTCACCTGGATCGGAAGGAGGAGGGAGGGGG AGCCGGTGACCAGGGGCTGATGTTCGGCTACGCCACCGACGAGACCGAGGAGTGCATGCC CCTCACCATTGTCCTGGCTCACAAGCTCAAC



consensusID : consensus_1854#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 581
fasta sequence
                              [ACAACAACATTGGCTGACAGTCATGGCTGGAATTCACCAAACTGGGAGTTCTGCCACATAAATAAACGGCTCGGCCGAACACTTTCTATATCGCCGGGGTGCCGAAGCCGCAAACAGGCCTGTTCGGTTCGGTCCACCTGCGTGCCGCTCCAGTGGACGGTGAGGGAGAGAGAGCCTGCACCTTGACAGCTAATATTAGCCTACCAGCTAATTAATTCGCCGCAAACCGCACCAACACAAAATGAGCGGCCAGCCGAACCCTTTCGTGGACACCTCGTCGACTGATGAAGACTACTTCCTCTTCACCTCGGAGTCAGTTGGAGAAGGACACCCAGACAAGATTTGTGACCAGATCAGCGATGCCGTGTTGGACGCACATCTGGAGCAAGACCCCAACGCTAAAGTAGCATGTGGTAGGAGATGGTTTCATTTCTTTCAGGCACTTTAAATGACACTTGATTGCTTTTATTTGTTGGTAATTTTCCTGCTTATTTGTCTTTCCGAGAGGACTTTGATGGACCCCGCTCCTGAATGAGCCGACATCAGACATCCGGTCCGATTTATCTTTTCTTTAGGAAAAT]

[+] EMBL CA590721             [ACAACAACATTGGCTGACAGTCATGGCTGGAATTCACCAAACTGGGAGTTCTGCCACATAAATAAACGGCTCGGCCGAACACTTTCTATATCGCCGGGGTGCCGAAGCCGCAAACAGGCCTGTTCGGTTCGGTCCACCTGCGTGCCGCTCCAGTGGACGGTGAGGGAGAGAGAGCCTGCACCTTGACAGCTAATATTAGCCTACCAGCTAATTAATTCGCCGCAAACCGCACCAACACAAAATGAGCGGCCAGCCGAACCCTTTCGTGGACACCTCGTCGACTGATGAAGACTACTTCCTCTTCACCTCGGAGTCAGTTGGAGAAGGACACCCAGACAAGATTTGTGACCAGATCAGCGATGCCGTGTTGGACGCACATCTGGAGCAAGACCCCAACGCTAAAGTAGCATGTGGTAGGAGATGGTTTCATTTCTTTCAGGCACTTTAAATGACACTTGATTGCTTTTATTTGTTGGTAATTTTCCTGCTTATTTGTCTTTCCGAGAGGACTTTGATGGACCCCGCTCCTGAATGAGCCGACATCAGACATCCGGTCCGATTTATCTTTTCTTTAGGAAAAT]


>consensus_1854#1 ACAACAACATTGGCTGACAGTCATGGCTGGAATTCACCAAACTGGGAGTTCTGCCACATA AATAAACGGCTCGGCCGAACACTTTCTATATCGCCGGGGTGCCGAAGCCGCAAACAGGCC TGTTCGGTTCGGTCCACCTGCGTGCCGCTCCAGTGGACGGTGAGGGAGAGAGAGCCTGCA CCTTGACAGCTAATATTAGCCTACCAGCTAATTAATTCGCCGCAAACCGCACCAACACAA AATGAGCGGCCAGCCGAACCCTTTCGTGGACACCTCGTCGACTGATGAAGACTACTTCCT CTTCACCTCGGAGTCAGTTGGAGAAGGACACCCAGACAAGATTTGTGACCAGATCAGCGA TGCCGTGTTGGACGCACATCTGGAGCAAGACCCCAACGCTAAAGTAGCATGTGGTAGGAG ATGGTTTCATTTCTTTCAGGCACTTTAAATGACACTTGATTGCTTTTATTTGTTGGTAAT TTTCCTGCTTATTTGTCTTTCCGAGAGGACTTTGATGGACCCCGCTCCTGAATGAGCCGA CATCAGACATCCGGTCCGATTTATCTTTTCTTTAGGAAAAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1854#0      ------------------------------------------------------------
consensus_1854#1      ACAACAACATTGGCTGACAGTCATGGCTGGAATTCACCAAACTGGGAGTTCTGCCACATA 60
                                                                                  

consensus_1854#0      ------------------------------------GGGTGCCGAAGCCGCAAACAGGCC 24
consensus_1854#1      AATAAACGGCTCGGCCGAACACTTTCTATATCGCCGGGGTGCCGAAGCCGCAAACAGGCC 120
                                                          ************************

consensus_1854#0      TGTTCGGTTCGGTCCACCTGCGTGCCGCTCCAGTGGACGGTGAGGGAGAGAGAGCCTGCA 84
consensus_1854#1      TGTTCGGTTCGGTCCACCTGCGTGCCGCTCCAGTGGACGGTGAGGGAGAGAGAGCCTGCA 180
                      ************************************************************

consensus_1854#0      CCTTGACAGCTAATATTAGCCTACCAGCTAATTAATTCGCCGCAAACCGCACCAACACAA 144
consensus_1854#1      CCTTGACAGCTAATATTAGCCTACCAGCTAATTAATTCGCCGCAAACCGCACCAACACAA 240
                      ************************************************************

consensus_1854#0      AATGAGCGGCCAGCCGAACCCTTTCGTGGACACCTCGTCGACTGATGAAGACTACTTCCT 204
consensus_1854#1      AATGAGCGGCCAGCCGAACCCTTTCGTGGACACCTCGTCGACTGATGAAGACTACTTCCT 300
                      ************************************************************

consensus_1854#0      CTTCACCTCGGAGTCAGTTGGAGAAGGACACCCAGACAAGATTTGTGACCAGATCAGCGA 264
consensus_1854#1      CTTCACCTCGGAGTCAGTTGGAGAAGGACACCCAGACAAGATTTGTGACCAGATCAGCGA 360
                      ************************************************************

consensus_1854#0      TGCCGTGTTGGACGCACATCTGGAGCAAGACCCCAACGCTAAAGTAGCATGTGAGACGGT 324
consensus_1854#1      TGCCGTGTTGGACGCACATCTGGAGCAAGACCCCAACGCTAAAGTAGCATGTGGTA---- 416
                      *****************************************************  *    

consensus_1854#0      CGCTAAGACGGGGATGATCCTGCTGGTGGGGGAAATCACCTCCAGGGCTGTTGTTGACTA 384
consensus_1854#1      ---------GGAGATGGTTTCATTTCTTTCAGGCACT--TTAAATGACACTTGATTGCTT 465
                               ** **** *     *  *    *  *     *  * * *  *** *  ** 

consensus_1854#0      TCAGAAGATTGTCAGGGATGCAATCAAGCATATTGGTTACGACGACTCCTCCAAAGGATT 444
consensus_1854#1      TTAT----TTGTTGGTAATTT--TCCTGCTTATTTGT--------CTTTCCGAGAGGACT 511
                      * *     ****  *  **    **  ** **** **        **   * * **** *

consensus_1854#0      TGATTATAAGACCTGTAACGTGCTGGTGGCGTTGGAGCAGCAGTCCCCCGAAATTGCTCA 504
consensus_1854#1      T--TGATGGACCCCGC----TCCTGAATGAGCCGA--CATCAGACATCCGGT-CCGATTT 562
                      *  * **    ** *     * ***   * *  *   ** *** *  ***     * *  

consensus_1854#0      AGGTGTTCACCTGGATCGGAAGGAGGAGGGAGGGGGAGCCGGTGACCAGGGGCTGATGTT 564
consensus_1854#1      ATCTTTTCTTTAGGAAAAT----------------------------------------- 581
                      *  * ***    ***                                             

consensus_1854#0      CGGCTACGCCACCGACGAGACCGAGGAGTGCATGCCCCTCACCATTGTCCTGGCTCACAA 624
consensus_1854#1      ------------------------------------------------------------
                                                                                  

consensus_1854#0      GCTCAAC 631
consensus_1854#1      -------
                             




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)