These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1872#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 665 fasta sequence [TCCACACAAAGAAAGGCTCGGCATGTCGGATGAGGATTCCCGTGCCAGCACCAGCTCTTCATCCTCCACATCCTCCGGCCACCATCAGCAGCCAGACAACACACCTTCCAAGAAACGAGAGAGCAAAGCCAGCATGAGCAAGACCTCCAAACTCCTGTCTACCAGCGCTAAGAGAATTCAGAAAGAACTGGCCGACATTACTCTGGATCCGCCGCCCAACTGCAGTGCTGGTCCCAAAGGAGACAACATCTATGAGTGGAGGTCCACCATCCTGGGTCCCCCAGGCTCTGTGTATGAGGGAGGAGTCTTCTTCCTGGACATCGCCTTCACGCCAGACTACCCCTTCAAACCGCCCAAGGTGACGTTCCGGACCAGGATCTACCACTGCAACATCAACAGTCAGGGGGTGATCTGTCTGGACATCCTGAAGGACAACTGGAGTCCTGCCCTCACCATCTCCAAGGTCCTACTGTCCATCTGCTCCCTGCTGACTGACTGCAACCCTGCGGACCCCCTGGTGGGAAGCATCGCCACACAGTACACCACAAACAGACCCGAACACGACCGGATAGCCAAACAGTGGACCAAACGCTACGCCACATAATCGCTCGACGAGCCGCCGGTTGATTGACTCGTGGGTGGGTGGGGGCTGACTCAGGGGTGGA] [+] EMBL CA844683 [TCCACACAAAGAAAGGCTCGGCATGTCGGATGAGGATTCCCGTGCCAGCACCAGCTCTTCATCCTCCACATCCTCCGGCCACCATCAGCAGCCAGACAACACACCTTCCAAGAAACGAGAGAGCAAAGCCAGCATGAGCAAGACCTCCAAACTCCTGTCTACCAGCGCTAAGAGAATTCAGAAAGAACTGGCCGACATTACTCTGGATCCGCCGCCCAACTGCAGTGCTGGTCCCAAAGGAGACAACATCTATGAGTGGAGGTCCACCATCCTGGGTCCCCCAGGCTCTGTGTATGAGGGAGGAGTCTTCTTCCTGGACATCGCCTTCACGCCAGACTACCCCTTCAAACCGCCCAAGGTGACGTTCCGGACCAGGATCTACCACTGCAACATCAACAGTCAGGGGGTGATCTGTCTGGACATCCTGAAGGACAACTGGAGTCCTGCCCTCACCATCTCCAAGGTCCTACTGTCCATCTGCTCCCTGCTGACTGACTGCAACCCTGCGGACCCCCTGGTGGGAAGCATCGCCACACAGTACACCACAAACAGACCCGAACACGACCGGATAGCCAAACAGTGGACCAAACGCTACGCCACATAATCGCTCGACGAGCCGCCGGTTGATTGACTCGTGGGTGGGTGGGGGCTGACTCAGGGGTGGA] [+] EMBL FR0057287 [ CACACAAAGAAAGGCTCGGTATGTCGGATGAGGATTCCCGTGCCAGCACCAGCTCTTCATCCTCCACATCCTCCGGCCACCATCAGCAGCCAGACAACACACCTTCCAAGAAACGAGAGAGCAAAGCCAGCATGAGCAAGACCTCCAAACTCCTGTCTACCAGCGCTAAGAGAATTCAGAAAGAACTGGCCGACATTACTCTGGATCCGCCGCCCAACTGCAGTGCTGGTCCCAAAGGAGACAACATCTATGAGTGGAGGTCCACCATCCTGGGTCCCCCAGGCTCTGTGTATGAGGGAGGAGTCTTCTTCCTGGACATCGCCTTCACGCCAGACTACCCCTTCAAACCGCCCAAGGTGACGTTCCGGACCAGGATCTACCACTGCAACATCAACAGTCAGGGGGTGATCTGTCTGGACATCCTGAAGGACAACTGGAGTCCTGCCCTCACCATCTCCAAGGTCCTA ] consensusID : consensus_1872#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 196 fasta sequence [GCACCAGCTCTTCATCCTCCACATCCTCCGGCCACCATCAGCAGCCAGACAACACACCTTCCAAGAGACGAGAGAGCAAAGCCGTGTGGATTTTTATCTCAGAATTGAAGTCTTAAACTCCTGAAATTGTGTTGTTTAGTGTGGATTTTTAAGTGAACTGAAGGCCAGCTGGAACGAGATCGGGCAGCGCCGCCTT] [+] EMBL FR0057510 [GCACCAGCTCTTCATCCTCCACATCCTCCGGCCACCATCAGCAGCCAGACAACACACCTTCCAAGAGACGAGAGAGCAAAGCCGTGTGGATTTTTATCTCAGAATTGAAGTCTTAAACTCCTGAAATTGTGTTGTTTAGTGTGGATTTTTAAGTGAACTGAAGGCCAGCTGGAACGAGATCGGGCAGCGCCGCCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1872#0 TCCACACAAAGAAAGGCTCGGCATGTCGGATGAGGATTCCCGTGCCAGCACCAGCTCTTC 60 consensus_1872#1 -----------------------------------------------GCACCAGCTCTTC 13 ************* consensus_1872#0 ATCCTCCACATCCTCCGGCCACCATCAGCAGCCAGACAACACACCTTCCAAGAAACGAGA 120 consensus_1872#1 ATCCTCCACATCCTCCGGCCACCATCAGCAGCCAGACAACACACCTTCCAAGAGACGAGA 73 ***************************************************** ****** consensus_1872#0 GAGCAAAGCCAGCATGAGCAAGACCTCCAAACTCCTGTCTACCAGCGCTAAGAGAATTCA 180 consensus_1872#1 GAGCAAAGCCGTGTGGATTTTTATCTCAGAATTGAAGTCTTAAACTCCTGAAATTGTGTT 133 ********** ** * *** ** * **** * ** * * * consensus_1872#0 GAAAGAACTGGCCGACATTACTCTGGATCCGCCGCCCAACTGCAGTGCTGGTCCCAAAGG 240 consensus_1872#1 GTTTAGTGTGG---ATTTTTAAGTGAA-CTGAAGGCCAGCTGGAACG--AGATCGGGCAG 187 * *** * ** ** * * * * *** *** * * * * * consensus_1872#0 AGACAACATCTATGAGTGGAGGTCCACCATCCTGGGTCCCCCAGGCTCTGTGTATGAGGG 300 consensus_1872#1 CGCCGCCTT--------------------------------------------------- 196 * * * * consensus_1872#0 AGGAGTCTTCTTCCTGGACATCGCCTTCACGCCAGACTACCCCTTCAAACCGCCCAAGGT 360 consensus_1872#1 ------------------------------------------------------------ consensus_1872#0 GACGTTCCGGACCAGGATCTACCACTGCAACATCAACAGTCAGGGGGTGATCTGTCTGGA 420 consensus_1872#1 ------------------------------------------------------------ consensus_1872#0 CATCCTGAAGGACAACTGGAGTCCTGCCCTCACCATCTCCAAGGTCCTACTGTCCATCTG 480 consensus_1872#1 ------------------------------------------------------------ consensus_1872#0 CTCCCTGCTGACTGACTGCAACCCTGCGGACCCCCTGGTGGGAAGCATCGCCACACAGTA 540 consensus_1872#1 ------------------------------------------------------------ consensus_1872#0 CACCACAAACAGACCCGAACACGACCGGATAGCCAAACAGTGGACCAAACGCTACGCCAC 600 consensus_1872#1 ------------------------------------------------------------ consensus_1872#0 ATAATCGCTCGACGAGCCGCCGGTTGATTGACTCGTGGGTGGGTGGGGGCTGACTCAGGG 660 consensus_1872#1 ------------------------------------------------------------ consensus_1872#0 GTGGA 665 consensus_1872#1 ----- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |