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Takifugu rubripes
cluster # 1872 cluster # 1872       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1872#0 length = 665 sequences # 2  
consensus_1872#1 length = 196 sequences # 1  

consensusID : consensus_1872#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 665
fasta sequence
                              [TCCACACAAAGAAAGGCTCGGCATGTCGGATGAGGATTCCCGTGCCAGCACCAGCTCTTCATCCTCCACATCCTCCGGCCACCATCAGCAGCCAGACAACACACCTTCCAAGAAACGAGAGAGCAAAGCCAGCATGAGCAAGACCTCCAAACTCCTGTCTACCAGCGCTAAGAGAATTCAGAAAGAACTGGCCGACATTACTCTGGATCCGCCGCCCAACTGCAGTGCTGGTCCCAAAGGAGACAACATCTATGAGTGGAGGTCCACCATCCTGGGTCCCCCAGGCTCTGTGTATGAGGGAGGAGTCTTCTTCCTGGACATCGCCTTCACGCCAGACTACCCCTTCAAACCGCCCAAGGTGACGTTCCGGACCAGGATCTACCACTGCAACATCAACAGTCAGGGGGTGATCTGTCTGGACATCCTGAAGGACAACTGGAGTCCTGCCCTCACCATCTCCAAGGTCCTACTGTCCATCTGCTCCCTGCTGACTGACTGCAACCCTGCGGACCCCCTGGTGGGAAGCATCGCCACACAGTACACCACAAACAGACCCGAACACGACCGGATAGCCAAACAGTGGACCAAACGCTACGCCACATAATCGCTCGACGAGCCGCCGGTTGATTGACTCGTGGGTGGGTGGGGGCTGACTCAGGGGTGGA]

[+] EMBL CA844683             [TCCACACAAAGAAAGGCTCGGCATGTCGGATGAGGATTCCCGTGCCAGCACCAGCTCTTCATCCTCCACATCCTCCGGCCACCATCAGCAGCCAGACAACACACCTTCCAAGAAACGAGAGAGCAAAGCCAGCATGAGCAAGACCTCCAAACTCCTGTCTACCAGCGCTAAGAGAATTCAGAAAGAACTGGCCGACATTACTCTGGATCCGCCGCCCAACTGCAGTGCTGGTCCCAAAGGAGACAACATCTATGAGTGGAGGTCCACCATCCTGGGTCCCCCAGGCTCTGTGTATGAGGGAGGAGTCTTCTTCCTGGACATCGCCTTCACGCCAGACTACCCCTTCAAACCGCCCAAGGTGACGTTCCGGACCAGGATCTACCACTGCAACATCAACAGTCAGGGGGTGATCTGTCTGGACATCCTGAAGGACAACTGGAGTCCTGCCCTCACCATCTCCAAGGTCCTACTGTCCATCTGCTCCCTGCTGACTGACTGCAACCCTGCGGACCCCCTGGTGGGAAGCATCGCCACACAGTACACCACAAACAGACCCGAACACGACCGGATAGCCAAACAGTGGACCAAACGCTACGCCACATAATCGCTCGACGAGCCGCCGGTTGATTGACTCGTGGGTGGGTGGGGGCTGACTCAGGGGTGGA]
[+] EMBL FR0057287            [  CACACAAAGAAAGGCTCGGTATGTCGGATGAGGATTCCCGTGCCAGCACCAGCTCTTCATCCTCCACATCCTCCGGCCACCATCAGCAGCCAGACAACACACCTTCCAAGAAACGAGAGAGCAAAGCCAGCATGAGCAAGACCTCCAAACTCCTGTCTACCAGCGCTAAGAGAATTCAGAAAGAACTGGCCGACATTACTCTGGATCCGCCGCCCAACTGCAGTGCTGGTCCCAAAGGAGACAACATCTATGAGTGGAGGTCCACCATCCTGGGTCCCCCAGGCTCTGTGTATGAGGGAGGAGTCTTCTTCCTGGACATCGCCTTCACGCCAGACTACCCCTTCAAACCGCCCAAGGTGACGTTCCGGACCAGGATCTACCACTGCAACATCAACAGTCAGGGGGTGATCTGTCTGGACATCCTGAAGGACAACTGGAGTCCTGCCCTCACCATCTCCAAGGTCCTA                                                                                                                                                                                                    ]


>consensus_1872#0 TCCACACAAAGAAAGGCTCGGCATGTCGGATGAGGATTCCCGTGCCAGCACCAGCTCTTC ATCCTCCACATCCTCCGGCCACCATCAGCAGCCAGACAACACACCTTCCAAGAAACGAGA GAGCAAAGCCAGCATGAGCAAGACCTCCAAACTCCTGTCTACCAGCGCTAAGAGAATTCA GAAAGAACTGGCCGACATTACTCTGGATCCGCCGCCCAACTGCAGTGCTGGTCCCAAAGG AGACAACATCTATGAGTGGAGGTCCACCATCCTGGGTCCCCCAGGCTCTGTGTATGAGGG AGGAGTCTTCTTCCTGGACATCGCCTTCACGCCAGACTACCCCTTCAAACCGCCCAAGGT GACGTTCCGGACCAGGATCTACCACTGCAACATCAACAGTCAGGGGGTGATCTGTCTGGA CATCCTGAAGGACAACTGGAGTCCTGCCCTCACCATCTCCAAGGTCCTACTGTCCATCTG CTCCCTGCTGACTGACTGCAACCCTGCGGACCCCCTGGTGGGAAGCATCGCCACACAGTA CACCACAAACAGACCCGAACACGACCGGATAGCCAAACAGTGGACCAAACGCTACGCCAC ATAATCGCTCGACGAGCCGCCGGTTGATTGACTCGTGGGTGGGTGGGGGCTGACTCAGGG GTGGA



consensusID : consensus_1872#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 196
fasta sequence
                              [GCACCAGCTCTTCATCCTCCACATCCTCCGGCCACCATCAGCAGCCAGACAACACACCTTCCAAGAGACGAGAGAGCAAAGCCGTGTGGATTTTTATCTCAGAATTGAAGTCTTAAACTCCTGAAATTGTGTTGTTTAGTGTGGATTTTTAAGTGAACTGAAGGCCAGCTGGAACGAGATCGGGCAGCGCCGCCTT]

[+] EMBL FR0057510            [GCACCAGCTCTTCATCCTCCACATCCTCCGGCCACCATCAGCAGCCAGACAACACACCTTCCAAGAGACGAGAGAGCAAAGCCGTGTGGATTTTTATCTCAGAATTGAAGTCTTAAACTCCTGAAATTGTGTTGTTTAGTGTGGATTTTTAAGTGAACTGAAGGCCAGCTGGAACGAGATCGGGCAGCGCCGCCTT]


>consensus_1872#1 GCACCAGCTCTTCATCCTCCACATCCTCCGGCCACCATCAGCAGCCAGACAACACACCTT CCAAGAGACGAGAGAGCAAAGCCGTGTGGATTTTTATCTCAGAATTGAAGTCTTAAACTC CTGAAATTGTGTTGTTTAGTGTGGATTTTTAAGTGAACTGAAGGCCAGCTGGAACGAGAT CGGGCAGCGCCGCCTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1872#0      TCCACACAAAGAAAGGCTCGGCATGTCGGATGAGGATTCCCGTGCCAGCACCAGCTCTTC 60
consensus_1872#1      -----------------------------------------------GCACCAGCTCTTC 13
                                                                     *************

consensus_1872#0      ATCCTCCACATCCTCCGGCCACCATCAGCAGCCAGACAACACACCTTCCAAGAAACGAGA 120
consensus_1872#1      ATCCTCCACATCCTCCGGCCACCATCAGCAGCCAGACAACACACCTTCCAAGAGACGAGA 73
                      ***************************************************** ******

consensus_1872#0      GAGCAAAGCCAGCATGAGCAAGACCTCCAAACTCCTGTCTACCAGCGCTAAGAGAATTCA 180
consensus_1872#1      GAGCAAAGCCGTGTGGATTTTTATCTCAGAATTGAAGTCTTAAACTCCTGAAATTGTGTT 133
                      **********     **     * ***  ** *   ****   *   ** * *   *   

consensus_1872#0      GAAAGAACTGGCCGACATTACTCTGGATCCGCCGCCCAACTGCAGTGCTGGTCCCAAAGG 240
consensus_1872#1      GTTTAGTGTGG---ATTTTTAAGTGAA-CTGAAGGCCAGCTGGAACG--AGATCGGGCAG 187
                      *       ***   *  **    ** * * *  * *** *** *  *   *  *     *

consensus_1872#0      AGACAACATCTATGAGTGGAGGTCCACCATCCTGGGTCCCCCAGGCTCTGTGTATGAGGG 300
consensus_1872#1      CGCCGCCTT--------------------------------------------------- 196
                       * *  * *                                                   

consensus_1872#0      AGGAGTCTTCTTCCTGGACATCGCCTTCACGCCAGACTACCCCTTCAAACCGCCCAAGGT 360
consensus_1872#1      ------------------------------------------------------------
                                                                                  

consensus_1872#0      GACGTTCCGGACCAGGATCTACCACTGCAACATCAACAGTCAGGGGGTGATCTGTCTGGA 420
consensus_1872#1      ------------------------------------------------------------
                                                                                  

consensus_1872#0      CATCCTGAAGGACAACTGGAGTCCTGCCCTCACCATCTCCAAGGTCCTACTGTCCATCTG 480
consensus_1872#1      ------------------------------------------------------------
                                                                                  

consensus_1872#0      CTCCCTGCTGACTGACTGCAACCCTGCGGACCCCCTGGTGGGAAGCATCGCCACACAGTA 540
consensus_1872#1      ------------------------------------------------------------
                                                                                  

consensus_1872#0      CACCACAAACAGACCCGAACACGACCGGATAGCCAAACAGTGGACCAAACGCTACGCCAC 600
consensus_1872#1      ------------------------------------------------------------
                                                                                  

consensus_1872#0      ATAATCGCTCGACGAGCCGCCGGTTGATTGACTCGTGGGTGGGTGGGGGCTGACTCAGGG 660
consensus_1872#1      ------------------------------------------------------------
                                                                                  

consensus_1872#0      GTGGA 665
consensus_1872#1      -----
                           




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)