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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1903#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 619 fasta sequence
[TTACGTGGCGCCCACGGCCAACTTGGACCAAAAGGACAGGCAATTTGTTGCCAAGGTGATGCAAGTGCTCAACGCCGACGCCATGGTGGTGAAGCTGAACTCTGGAGAGTACAAGACCATCCACCTGTCCAGCATCCGGCCCCCCAGGAACGAGGGAGAGGAGAAGAACAAAGACAAAGACAAACGCTTCCGTCCACTCTACGACATCCCGTACATGTTCGAGGCCCGCGAGTTCCTGAGGAAGAAGCTCATCGGTAAAAAGGTCAATGTGACGGTGGACTACATCGGAGCAGCGACCGGCCCGGCAGAAGGCACGCCCACCTTTGCAGAGCGCACCTGTGCGACAGTCACCATCGGCGGCATTAACATCGCAGAAGCTCTGGTCAGCAAAGGCCTGGCCACAGTCATCCGGTACAGACAGGACGACGACCAGCGCTCCTCCCACTACGACGAGCTGCTGGCCGCAGAGGCACGGGCCATCAAAAATGGGAAAGGGCTGCACAGTAAGAAGGAGGTTCCCATCCACAGAGTGGCGGATATCTCTGGGGAGACGCAGAAAGCCAAGCAGTTCCTGCCCTTCCTGCAGCGGGCCGGCCGATCCGAGGCCGTGGTCGAGTAC]
[+] EMBL CA588912 [TTACGTGGCGCCCACGGCCAACTTGGACCAAAAGGACAGGCAATTTGTTGCCAAGGTGATGCAAGTGCTCAACGCCGACGCCATGGTGGTGAAGCTGAACTCTGGAGAGTACAAGACCATCCACCTGTCCAGCATCCGGCCCCCCAGGAACGAGGGAGAGGAGAAGAACAAAGACAAAGACAAACGCTTCCGTCCACTCTACGACATCCCGTACATGTTCGAGGCCCGCGAGTTCCTGAGGAAGAAGCTCATCGGTAAAAAGGTCAATGTGACGGTGGACTACATCGGAGCAGCGACCGGCCCGGCAGAAGGCACGCCCACCTTTGCAGAGCGCACCTGTGCGACAGTCACCATCGGCGGCATTAACATCGCAGAAGCTCTGGTCAGCAAAGGCCTGGCCACAGTCATCCGGTACAGACAGGACGACGACCAGCGCTCCTCCCACTACGACGAGCTGCTGGCCGCAGAGGCACGGGCCATCAAAAATGGGAAAGGGCTGCACAGTAAGAAGGAGGTTCCCATCCACAGAGTGGCGGATATCTCTGGGGAGACGCAGAAAGCCAAGCAGTTCCTGCCCTTCCTGCAGCGGGCCGGCCGATCCGAGGCCGTGGTCGAGTAC]
consensusID : consensus_1903#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 261 fasta sequence
[GATCATCCTGAAGAGCTGCCCCAACCAGAGCATACTGGGAACCATCCTCCACCCGAATGGCAACATCACGGAGCTGCTGCTGAAGGAAGGCTTCGCCCGCTGTGTGGACTGGTCCATGGCGGTGTACACGCAGGGCGCCGAGAAACTGCGCGCAGCCGAGCGATCCGCGAAAGAGCGCAAAGTCCGTATCTGGAAGGATTACGTGGCACCCACGGCCAACTGGGACCAAAAGGACAGGCAATTTGGTGGCAAGGTGATGCA]
[+] EMBL FR0061117 [GATCATCCTGAAGAGCTGCCCCAACCAGATCATACTGGGAACCATCCTCCACCCGAATGGCAACATCACGGAGCTGCTGCTGAAGGAAGGCTTCGCCCGCTGTGTGGACTGGTCCATGGCGGTGTACACGCAGGGCGCCGAGAAACTGCGCGCAGCCGATCGATCCGTGAAAGAACGCAAAGTCCGTATCTGGAAGGATTACGTGGCACCCACGGCCAACTGGGACCAAAAGGACAGGCATTTTGTTGCCAAGGTGATGCA]
[+] EMBL FR0061320 [ ATCCTGTAGAGCTGCCCCAACCAGAGCATACTGGGAACCATCCTCCACCCGAATGGCAACATCACGGAGCTGCTGCTGAAGGAAGGCTTCGCCCGCTGTGTGGACTGGTCCATGGCGGTGTACACGCAGGGCGCCGAGAAACTGCGCGCAGCCGAGCGATCCGCGAAAGAGCGCAAAGTCCGTATCTGGAAGGATTACGTGGCACCCACGGCCAACTTGGACCAAAAGGACAGGCAATTTGGTGGCCA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1903#0 TTACGTGGCGCCCACGGCCAACTTGGACCAAAAGGACAGGCAATTTGTTGCCAAGGTGAT 60
consensus_1903#1 ------------------------------------------------------------
consensus_1903#0 GCAAGTGCTCAACGCCGACGCCATGGTGGTGAAGCTGAACTCTGGAGAGTACAAGACCAT 120
consensus_1903#1 ------------------------------------------------------------
consensus_1903#0 CCACCTGTCCAGCATCCGGCCCCCCAGGAACGAGGGAGAGGAGAAGAACAAAGACAAAGA 180
consensus_1903#1 ------------------------------------------------------------
consensus_1903#0 CAAACGCTTCCGTCCACTCTACGACATCCCGTACATGTTCGAGGCCCGCGAGTTCCTGAG 240
consensus_1903#1 ------------------------------------------------------------
consensus_1903#0 GAAGAAGCTCATCGGTAAAAAGGTCAATGTGACGGTGGACTACATCGGAGCAGCGACCGG 300
consensus_1903#1 ------------------------------------------------------GATCAT 6
** *
consensus_1903#0 CCCGGCAGAAGGCACGCCCACCTTTGCAGAGCGCACCTGTGCGACAGTCACCATCGGCGG 360
consensus_1903#1 CCTG--AAGAGCTGCCCCAACC-----AGAGCATAC-TGGGAACCATCCTCCACCCG-AA 57
** * * ** * ** *** ***** ** ** * ** * *** * *
consensus_1903#0 CATTAACATCGCAGAAGCTCTGGTCAGCAAAGGCCTGGCCACAGTCATCCGGTACAGACA 420
consensus_1903#1 TGGCAACATCACGGAGCTGCTGCTGAAGGAAGGCTTCGCC-------CGCTGTGTGGACT 110
****** * ** *** * * ***** * *** * ** ***
consensus_1903#0 GGACGACGACCAGCGCTCCTCCCACTACGACGAGCTGCTGGCCGCAGAGGCACGGGCCAT 480
consensus_1903#1 GGTCCATGGC-GGTG-TACACGCAGGGCGCCGAGAAACTGCGCGCAGCCGAGCGATCCGC 168
** * * * * * * * * * ** ** **** *** ***** * ** **
consensus_1903#0 CAAAAATGGGAAAGGGCTGCACAGTAAGAAGGAGGTTCCCATCCACAGAGTGGCGGATAT 540
consensus_1903#1 GAAAGAGCGCAAAGTCCGTATCTGGAAGGATTACGTGGC-ACCCACGGCCAACTGGGA-- 225
*** * * **** * * * *** * * ** * * **** * **
consensus_1903#0 CTCTGGGGAGACGCAGAAAGCCAAGCAGTTCCTGCCCTTCCTGCAGCGGGCCGGCCGATC 600
consensus_1903#1 CCAAAAGGACAGGCAATTTGGTGGCAAGGTGATGCA------------------------ 261
* *** * *** * ** * ***
consensus_1903#0 CGAGGCCGTGGTCGAGTAC 619
consensus_1903#1 -------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |