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Takifugu rubripes
cluster # 1907 cluster # 1907       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1907#0 length = 695 sequences # 2  
consensus_1907#1 length = 450 sequences # 1  

consensusID : consensus_1907#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 695
fasta sequence
                              [GAAACCAAAGCAAAGCAGACTTTATTGAAGCAGAGGAAGAACATTATTACAGACCCTAAATGCTTGTGTAGTAAATAGATTTATTGGTATTGTTTCATCATCCTGGGTTTCCTTCCAAGAGCTGCATTTTCTAGAGTTTATTATTGAGAAAAATAACTTGTAGCTGCTTATATTTAAGGAAAATCTAGGTAAGGTTCTGAAGACTGTTGATCTGTCTGATGACTCATTTGTAGGAGGATTTTTCGCGTATGGATTGACTTGCTACAACTGTGTAACCAATGACCCTAAATCCTGCACCAAGACCGTGAGATGTGTTGCTCCATTGGATCGATGCTCCTCACTTGAGTATAATGGTTTAGTCACCAAGACCTGCCTTCCAAGTGCTGCATGTGTGGGCCCTGTTAGTTGCTGTACCTCAGATTTATGCAACAGCGCTGTGTCCACTGGTTCCAGTGTCCTGTTTCTGCTGGTATCAGCAGCAATCACTTCAATCTTTCTCTGAGGAAGGAAGGAATATTTTCCTTTCAGTACTCGAGATGAAAACTTCAGTCTAAAGCCCATTTGAAGAAAGAAGTCAAACATCTACAAAGCCTTGACGTGATGTTAAACTGAAAATATTCAATAAAACCACTCAGAAAAAAAAAAAAAAAAAAAAAAAACCCCGGGGGGGGCCCGGGAACCAAGTTTTGGTCCCC]

[+] EMBL BU807882             [GAAACCAAAGCAAAGCAGACTTTATTGAAGCAGAGGAAGAACATTATTACAGACCCTAAATGCTTGTGTAGTAAATAGATTTATTGGTATTGTTTCATCATCCTGGGTTTCCTTCCAAGAGCTGCATTTTCTAGAGTTTATTATTGAGAAAAATAACTTGTAGCTGCTTATATTTAAGGAAAATCTAGGTAAGGTTCTGAAGACTGTTGATCTGTCTGATGACTCATTTGTAGGAGGATTTTTCGCGTATGGATTGACTTGCTACAACTGTGTAACCAATGACCCTAAATCCTGCACCAAGACCGTGAGATGTGTTGCTCCATTGGATCGATGCTCCTCACTTGAGTATAATGGTTTAGTCACCAAGACCTGCCTTCCAAGTGCTGCATGTGTGGGCCCTGTTAGTTGCTGTACCTCAGATTTATGCAACAGCGCTGTGTCCACTGGTTCCAGTGTCCTGTTTCTGCTGGTATCAGCAGCAATCACTTCAATCTTTCTCTGAGGAAGGAAGGAATATTTTCCTTTCAGTACTCGAGATGAAAACTTCAGTCTAAAGCCCATTTGAAGAAAGAAGTCAAACATCTACAAAGCCTTGACATGATGTTAAACTGAAAATATTCAATAAAACCA                                                                 ]
[+] EMBL FR0056264            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ACTCGAGATGAAAACTTCAGTCTAAAGCCCATTTGAAGAAAGAAGTCAAACATCTACAAAGCCTTGACGTGATGTTAAACTGAAAATATTCAATAAAACCACTCAGAAAAAAAAAAAAAAAAAAAAAAAACCCCGGGGGGGGCCCGGGAACCAAGTTTTGGTCCCC]


>consensus_1907#0 GAAACCAAAGCAAAGCAGACTTTATTGAAGCAGAGGAAGAACATTATTACAGACCCTAAA TGCTTGTGTAGTAAATAGATTTATTGGTATTGTTTCATCATCCTGGGTTTCCTTCCAAGA GCTGCATTTTCTAGAGTTTATTATTGAGAAAAATAACTTGTAGCTGCTTATATTTAAGGA AAATCTAGGTAAGGTTCTGAAGACTGTTGATCTGTCTGATGACTCATTTGTAGGAGGATT TTTCGCGTATGGATTGACTTGCTACAACTGTGTAACCAATGACCCTAAATCCTGCACCAA GACCGTGAGATGTGTTGCTCCATTGGATCGATGCTCCTCACTTGAGTATAATGGTTTAGT CACCAAGACCTGCCTTCCAAGTGCTGCATGTGTGGGCCCTGTTAGTTGCTGTACCTCAGA TTTATGCAACAGCGCTGTGTCCACTGGTTCCAGTGTCCTGTTTCTGCTGGTATCAGCAGC AATCACTTCAATCTTTCTCTGAGGAAGGAAGGAATATTTTCCTTTCAGTACTCGAGATGA AAACTTCAGTCTAAAGCCCATTTGAAGAAAGAAGTCAAACATCTACAAAGCCTTGACGTG ATGTTAAACTGAAAATATTCAATAAAACCACTCAGAAAAAAAAAAAAAAAAAAAAAAAAC CCCGGGGGGGGCCCGGGAACCAAGTTTTGGTCCCC



consensusID : consensus_1907#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 450
fasta sequence
                              [TTCTTTTCTCTGTAATCATAATGAATCTTTATGGAGCTCTGATTATATTCATGACTCTGTCTACAGCGTATGGATTGACTTGCTACAACTGTGTAACCAATGACCCTAAATCCTGCACCGAGACCGTGAGATGTGTTCCTCCATTTGATCGATGCTCCTCACTTGAGTTTAATGGTTTAATCACCAAGACCTGCCTTGCAAGTGCTTTATGTGTCAGCCCCATTAGTTGCTGTACCTCAGATTTATGCAACAGCGCTGTGTCCACTGGTTCCAGTGTCCTGTTTCTGCTGGTATCAGCAGCAATCACTTCAATCTTTCTCTGAGGAAGGAAGGAATATTTTCCTTTCAGTACTCGAGATGAAAACTTCAGTCTAAAGCCCATTTGAAGAAAGAAGTCAAACATCTACAAAGCCTTGACGTGATGTTAAACTGAAAATATTCAATAAAACC]

[+] EMBL CA845362             [TTCTTTTCTCTGTAATCATAATGAATCTTTATGGAGCTCTGATTATATTCATGACTCTGTCTACAGCGTATGGATTGACTTGCTACAACTGTGTAACCAATGACCCTAAATCCTGCACCGAGACCGTGAGATGTGTTCCTCCATTTGATCGATGCTCCTCACTTGAGTTTAATGGTTTAATCACCAAGACCTGCCTTGCAAGTGCTTTATGTGTCAGCCCCATTAGTTGCTGTACCTCAGATTTATGCAACAGCGCTGTGTCCACTGGTTCCAGTGTCCTGTTTCTGCTGGTATCAGCAGCAATCACTTCAATCTTTCTCTGAGGAAGGAAGGAATATTTTCCTTTCAGTACTCGAGATGAAAACTTCAGTCTAAAGCCCATTTGAAGAAAGAAGTCAAACATCTACAAAGCCTTGACGTGATGTTAAACTGAAAATATTCAATAAAACC]


>consensus_1907#1 TTCTTTTCTCTGTAATCATAATGAATCTTTATGGAGCTCTGATTATATTCATGACTCTGT CTACAGCGTATGGATTGACTTGCTACAACTGTGTAACCAATGACCCTAAATCCTGCACCG AGACCGTGAGATGTGTTCCTCCATTTGATCGATGCTCCTCACTTGAGTTTAATGGTTTAA TCACCAAGACCTGCCTTGCAAGTGCTTTATGTGTCAGCCCCATTAGTTGCTGTACCTCAG ATTTATGCAACAGCGCTGTGTCCACTGGTTCCAGTGTCCTGTTTCTGCTGGTATCAGCAG CAATCACTTCAATCTTTCTCTGAGGAAGGAAGGAATATTTTCCTTTCAGTACTCGAGATG AAAACTTCAGTCTAAAGCCCATTTGAAGAAAGAAGTCAAACATCTACAAAGCCTTGACGT GATGTTAAACTGAAAATATTCAATAAAACC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1907#0      GAAACCAAAGCAAAGCAGACTTTATTGAAGCAGAGGAAGAACATTATTACAGACCCTAAA 60
consensus_1907#1      ------------------------------------------------------------
                                                                                  

consensus_1907#0      TGCTTGTGTAGTAAATAGATTTATTGGTATTGTTTCATCATCCTGGGTTTCCTTCCAAGA 120
consensus_1907#1      ------------------------------------------------------------
                                                                                  

consensus_1907#0      GCTGCATTTTCTAGAGTTTATTATTGAGAAAAATAACTTGTAGCTGCTTATATTTAAGGA 180
consensus_1907#1      --------------------------------------------TTCTTTTCTCTGT--- 13
                                                                  * *** * * *     

consensus_1907#0      AAATCTAGGTAAGGTTCTGAAGACTGTTGATCTGTCTGATGACTCATTTGTAGGAGGATT 240
consensus_1907#1      -AATCATAATGAATCTTTATGGAGCTCTGATTATATTCATGACTCT-----------GTC 61
                       ****    * *   * *   **    ****     * *******             * 

consensus_1907#0      TTTCGCGTATGGATTGACTTGCTACAACTGTGTAACCAATGACCCTAAATCCTGCACCAA 300
consensus_1907#1      TACAGCGTATGGATTGACTTGCTACAACTGTGTAACCAATGACCCTAAATCCTGCACCGA 121
                      *   ****************************************************** *

consensus_1907#0      GACCGTGAGATGTGTTGCTCCATTGGATCGATGCTCCTCACTTGAGTATAATGGTTTAGT 360
consensus_1907#1      GACCGTGAGATGTGTTCCTCCATTTGATCGATGCTCCTCACTTGAGTTTAATGGTTTAAT 181
                      **************** ******* ********************** ********** *

consensus_1907#0      CACCAAGACCTGCCTTCCAAGTGCTGCATGTGTGGGCCCTGTTAGTTGCTGTACCTCAGA 420
consensus_1907#1      CACCAAGACCTGCCTTGCAAGTGCTTTATGTGTCAGCCCCATTAGTTGCTGTACCTCAGA 241
                      **************** ********  ******  ****  *******************

consensus_1907#0      TTTATGCAACAGCGCTGTGTCCACTGGTTCCAGTGTCCTGTTTCTGCTGGTATCAGCAGC 480
consensus_1907#1      TTTATGCAACAGCGCTGTGTCCACTGGTTCCAGTGTCCTGTTTCTGCTGGTATCAGCAGC 301
                      ************************************************************

consensus_1907#0      AATCACTTCAATCTTTCTCTGAGGAAGGAAGGAATATTTTCCTTTCAGTACTCGAGATGA 540
consensus_1907#1      AATCACTTCAATCTTTCTCTGAGGAAGGAAGGAATATTTTCCTTTCAGTACTCGAGATGA 361
                      ************************************************************

consensus_1907#0      AAACTTCAGTCTAAAGCCCATTTGAAGAAAGAAGTCAAACATCTACAAAGCCTTGACGTG 600
consensus_1907#1      AAACTTCAGTCTAAAGCCCATTTGAAGAAAGAAGTCAAACATCTACAAAGCCTTGACGTG 421
                      ************************************************************

consensus_1907#0      ATGTTAAACTGAAAATATTCAATAAAACCACTCAGAAAAAAAAAAAAAAAAAAAAAAAAC 660
consensus_1907#1      ATGTTAAACTGAAAATATTCAATAAAACC------------------------------- 450
                      *****************************                               

consensus_1907#0      CCCGGGGGGGGCCCGGGAACCAAGTTTTGGTCCCC 695
consensus_1907#1      -----------------------------------
                                                         




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)