These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1907#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 695 fasta sequence [GAAACCAAAGCAAAGCAGACTTTATTGAAGCAGAGGAAGAACATTATTACAGACCCTAAATGCTTGTGTAGTAAATAGATTTATTGGTATTGTTTCATCATCCTGGGTTTCCTTCCAAGAGCTGCATTTTCTAGAGTTTATTATTGAGAAAAATAACTTGTAGCTGCTTATATTTAAGGAAAATCTAGGTAAGGTTCTGAAGACTGTTGATCTGTCTGATGACTCATTTGTAGGAGGATTTTTCGCGTATGGATTGACTTGCTACAACTGTGTAACCAATGACCCTAAATCCTGCACCAAGACCGTGAGATGTGTTGCTCCATTGGATCGATGCTCCTCACTTGAGTATAATGGTTTAGTCACCAAGACCTGCCTTCCAAGTGCTGCATGTGTGGGCCCTGTTAGTTGCTGTACCTCAGATTTATGCAACAGCGCTGTGTCCACTGGTTCCAGTGTCCTGTTTCTGCTGGTATCAGCAGCAATCACTTCAATCTTTCTCTGAGGAAGGAAGGAATATTTTCCTTTCAGTACTCGAGATGAAAACTTCAGTCTAAAGCCCATTTGAAGAAAGAAGTCAAACATCTACAAAGCCTTGACGTGATGTTAAACTGAAAATATTCAATAAAACCACTCAGAAAAAAAAAAAAAAAAAAAAAAAACCCCGGGGGGGGCCCGGGAACCAAGTTTTGGTCCCC] [+] EMBL BU807882 [GAAACCAAAGCAAAGCAGACTTTATTGAAGCAGAGGAAGAACATTATTACAGACCCTAAATGCTTGTGTAGTAAATAGATTTATTGGTATTGTTTCATCATCCTGGGTTTCCTTCCAAGAGCTGCATTTTCTAGAGTTTATTATTGAGAAAAATAACTTGTAGCTGCTTATATTTAAGGAAAATCTAGGTAAGGTTCTGAAGACTGTTGATCTGTCTGATGACTCATTTGTAGGAGGATTTTTCGCGTATGGATTGACTTGCTACAACTGTGTAACCAATGACCCTAAATCCTGCACCAAGACCGTGAGATGTGTTGCTCCATTGGATCGATGCTCCTCACTTGAGTATAATGGTTTAGTCACCAAGACCTGCCTTCCAAGTGCTGCATGTGTGGGCCCTGTTAGTTGCTGTACCTCAGATTTATGCAACAGCGCTGTGTCCACTGGTTCCAGTGTCCTGTTTCTGCTGGTATCAGCAGCAATCACTTCAATCTTTCTCTGAGGAAGGAAGGAATATTTTCCTTTCAGTACTCGAGATGAAAACTTCAGTCTAAAGCCCATTTGAAGAAAGAAGTCAAACATCTACAAAGCCTTGACATGATGTTAAACTGAAAATATTCAATAAAACCA ] [+] EMBL FR0056264 [ ACTCGAGATGAAAACTTCAGTCTAAAGCCCATTTGAAGAAAGAAGTCAAACATCTACAAAGCCTTGACGTGATGTTAAACTGAAAATATTCAATAAAACCACTCAGAAAAAAAAAAAAAAAAAAAAAAAACCCCGGGGGGGGCCCGGGAACCAAGTTTTGGTCCCC] consensusID : consensus_1907#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 450 fasta sequence [TTCTTTTCTCTGTAATCATAATGAATCTTTATGGAGCTCTGATTATATTCATGACTCTGTCTACAGCGTATGGATTGACTTGCTACAACTGTGTAACCAATGACCCTAAATCCTGCACCGAGACCGTGAGATGTGTTCCTCCATTTGATCGATGCTCCTCACTTGAGTTTAATGGTTTAATCACCAAGACCTGCCTTGCAAGTGCTTTATGTGTCAGCCCCATTAGTTGCTGTACCTCAGATTTATGCAACAGCGCTGTGTCCACTGGTTCCAGTGTCCTGTTTCTGCTGGTATCAGCAGCAATCACTTCAATCTTTCTCTGAGGAAGGAAGGAATATTTTCCTTTCAGTACTCGAGATGAAAACTTCAGTCTAAAGCCCATTTGAAGAAAGAAGTCAAACATCTACAAAGCCTTGACGTGATGTTAAACTGAAAATATTCAATAAAACC] [+] EMBL CA845362 [TTCTTTTCTCTGTAATCATAATGAATCTTTATGGAGCTCTGATTATATTCATGACTCTGTCTACAGCGTATGGATTGACTTGCTACAACTGTGTAACCAATGACCCTAAATCCTGCACCGAGACCGTGAGATGTGTTCCTCCATTTGATCGATGCTCCTCACTTGAGTTTAATGGTTTAATCACCAAGACCTGCCTTGCAAGTGCTTTATGTGTCAGCCCCATTAGTTGCTGTACCTCAGATTTATGCAACAGCGCTGTGTCCACTGGTTCCAGTGTCCTGTTTCTGCTGGTATCAGCAGCAATCACTTCAATCTTTCTCTGAGGAAGGAAGGAATATTTTCCTTTCAGTACTCGAGATGAAAACTTCAGTCTAAAGCCCATTTGAAGAAAGAAGTCAAACATCTACAAAGCCTTGACGTGATGTTAAACTGAAAATATTCAATAAAACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1907#0 GAAACCAAAGCAAAGCAGACTTTATTGAAGCAGAGGAAGAACATTATTACAGACCCTAAA 60 consensus_1907#1 ------------------------------------------------------------ consensus_1907#0 TGCTTGTGTAGTAAATAGATTTATTGGTATTGTTTCATCATCCTGGGTTTCCTTCCAAGA 120 consensus_1907#1 ------------------------------------------------------------ consensus_1907#0 GCTGCATTTTCTAGAGTTTATTATTGAGAAAAATAACTTGTAGCTGCTTATATTTAAGGA 180 consensus_1907#1 --------------------------------------------TTCTTTTCTCTGT--- 13 * *** * * * consensus_1907#0 AAATCTAGGTAAGGTTCTGAAGACTGTTGATCTGTCTGATGACTCATTTGTAGGAGGATT 240 consensus_1907#1 -AATCATAATGAATCTTTATGGAGCTCTGATTATATTCATGACTCT-----------GTC 61 **** * * * * ** **** * ******* * consensus_1907#0 TTTCGCGTATGGATTGACTTGCTACAACTGTGTAACCAATGACCCTAAATCCTGCACCAA 300 consensus_1907#1 TACAGCGTATGGATTGACTTGCTACAACTGTGTAACCAATGACCCTAAATCCTGCACCGA 121 * ****************************************************** * consensus_1907#0 GACCGTGAGATGTGTTGCTCCATTGGATCGATGCTCCTCACTTGAGTATAATGGTTTAGT 360 consensus_1907#1 GACCGTGAGATGTGTTCCTCCATTTGATCGATGCTCCTCACTTGAGTTTAATGGTTTAAT 181 **************** ******* ********************** ********** * consensus_1907#0 CACCAAGACCTGCCTTCCAAGTGCTGCATGTGTGGGCCCTGTTAGTTGCTGTACCTCAGA 420 consensus_1907#1 CACCAAGACCTGCCTTGCAAGTGCTTTATGTGTCAGCCCCATTAGTTGCTGTACCTCAGA 241 **************** ******** ****** **** ******************* consensus_1907#0 TTTATGCAACAGCGCTGTGTCCACTGGTTCCAGTGTCCTGTTTCTGCTGGTATCAGCAGC 480 consensus_1907#1 TTTATGCAACAGCGCTGTGTCCACTGGTTCCAGTGTCCTGTTTCTGCTGGTATCAGCAGC 301 ************************************************************ consensus_1907#0 AATCACTTCAATCTTTCTCTGAGGAAGGAAGGAATATTTTCCTTTCAGTACTCGAGATGA 540 consensus_1907#1 AATCACTTCAATCTTTCTCTGAGGAAGGAAGGAATATTTTCCTTTCAGTACTCGAGATGA 361 ************************************************************ consensus_1907#0 AAACTTCAGTCTAAAGCCCATTTGAAGAAAGAAGTCAAACATCTACAAAGCCTTGACGTG 600 consensus_1907#1 AAACTTCAGTCTAAAGCCCATTTGAAGAAAGAAGTCAAACATCTACAAAGCCTTGACGTG 421 ************************************************************ consensus_1907#0 ATGTTAAACTGAAAATATTCAATAAAACCACTCAGAAAAAAAAAAAAAAAAAAAAAAAAC 660 consensus_1907#1 ATGTTAAACTGAAAATATTCAATAAAACC------------------------------- 450 ***************************** consensus_1907#0 CCCGGGGGGGGCCCGGGAACCAAGTTTTGGTCCCC 695 consensus_1907#1 ----------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |