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These datas are free for academic use only, please contact me for any other use.

Takifugu rubripes
cluster # 1909 cluster # 1909       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1909#0 length = 391 sequences # 1  
consensus_1909#1 length = 368 sequences # 2  

consensusID : consensus_1909#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 391
fasta sequence
                              [GTTTAGACCGTGAAGGAACGTTTCGGAGAGAAACTATACGAGTCACTTCTCGTTGGACAGCTGCCTGATGTGTCCAAGATGCTGGATAAAGAGGACTTCACCATAACGAAGCGTGCCATCTTTGCAACTCAGAGACAGTGCCAGCCCCCCATCTGCACCCACAACATGCTTGAGGACGCCAGTGACCCCATCCTAAACTCCGTTCGACGCATCGGCCTCTTTAACAGCTCCTCTGACCGTGTCAAAATTATCTTTCATCCGGAGTTTCTTTCATCCACTTCTCCTCTACTTCCCATGGATTATGAGGACTTTGTGCGAGGTTGCCACCTGGGCGTCTTCCCCTCTTACTATGAGCCTTGGGGCTACACGCCAGCCGAGTGCACCGTCATGG]

[+] EMBL FR0063059            [GTTTAGACCGTGAAGGAACGTTTCGGAGAGAAACTATACGAGTCACTTCTCGTTGGACAGCTGCCTGATGTGTCCAAGATGCTGGATAAAGAGGACTTCACCATAACGAAGCGTGCCATCTTTGCAACTCAGAGACAGTGCCAGCCCCCCATCTGCACCCACAACATGCTTGAGGACGCCAGTGACCCCATCCTAAACTCCGTTCGACGCATCGGCCTCTTTAACAGCTCCTCTGACCGTGTCAAAATTATCTTTCATCCGGAGTTTCTTTCATCCACTTCTCCTCTACTTCCCATGGATTATGAGGACTTTGTGCGAGGTTGCCACCTGGGCGTCTTCCCCTCTTACTATGAGCCTTGGGGCTACACGCCAGCCGAGTGCACCGTCATGG]


>consensus_1909#0 GTTTAGACCGTGAAGGAACGTTTCGGAGAGAAACTATACGAGTCACTTCTCGTTGGACAG CTGCCTGATGTGTCCAAGATGCTGGATAAAGAGGACTTCACCATAACGAAGCGTGCCATC TTTGCAACTCAGAGACAGTGCCAGCCCCCCATCTGCACCCACAACATGCTTGAGGACGCC AGTGACCCCATCCTAAACTCCGTTCGACGCATCGGCCTCTTTAACAGCTCCTCTGACCGT GTCAAAATTATCTTTCATCCGGAGTTTCTTTCATCCACTTCTCCTCTACTTCCCATGGAT TATGAGGACTTTGTGCGAGGTTGCCACCTGGGCGTCTTCCCCTCTTACTATGAGCCTTGG GGCTACACGCCAGCCGAGTGCACCGTCATGG



consensusID : consensus_1909#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 368
fasta sequence
                              [CTTCCCCTCTTACTAAGAGCCTTGGGGCTACACGCCAGCCGAGTGCACCGTCATGGGAGAGCCCATCAATCTCAACAAACCTGTCAGGCTTTGGCTGTTTCATGGAGGAACACATCGCGGACCCATCAGCATATGGTATTTACATCCTGGACCGGAGGTTTCGAGGAGTCGACGAGTCCTGCAATCAGCTCACTTCCTTCCTGTTTCAGTTCTGTAAGCAGAGTCGGCGCCAGAGGATCATCCAGCGGAACCAAACCGAGCGCCTGAGCGACCTGCTGGACTGGCGATACCTCGGCAGATATTACATATCTGCACGTCACATGGCCCTGGGTAAAGCATTTCCTGACATCTACCAGTATGAGCTCAAT]

[+] EMBL FR0063939            [CTTCCCCTCTTACTATGAGCCTTGGGGCTACACGCCAGCCGAGTGCACCGTCATGGGAGAGCCCATCAATCTCAACAAACCTGTCAGGCTTTGGCTGTTTCATGGAGGAACACATCGCGGACCCATCAGCATATGGTATTTACATCCTGGACCGGAGGTTTCGAGGAGTCGACGAGTCCTGCAATCAGCTCACTTCCTTCCTGTTTCAGTTCTGTAAGCAGAGTCGGCGCCAGAGGATCATCCAGCGGAACCAAACCGAGCGCCTGAGCGACCTGCTGGACTGGCGATACCTCGGCAGATATTACATATCTGCACGTCACATGGCCCTGGGTAAAGCATTTCCTGACATCTACCAGTATGAGCTCAAT]
[+] EMBL FR0057557            [            CTAAGAGCCTTGGGGCTACACTCCAGCCGAGTGCACCGTCATGGGA ATCCCATCAATCTCAACAAACCTGTCAGGCTTTGGCTGTTTCATGGAGGAACACATCGCGGACCCATCAGCATATGGTATTTACATCCTGGAC                                                                                                                                                                                                                        ]


>consensus_1909#1 CTTCCCCTCTTACTAAGAGCCTTGGGGCTACACGCCAGCCGAGTGCACCGTCATGGGAGA GCCCATCAATCTCAACAAACCTGTCAGGCTTTGGCTGTTTCATGGAGGAACACATCGCGG ACCCATCAGCATATGGTATTTACATCCTGGACCGGAGGTTTCGAGGAGTCGACGAGTCCT GCAATCAGCTCACTTCCTTCCTGTTTCAGTTCTGTAAGCAGAGTCGGCGCCAGAGGATCA TCCAGCGGAACCAAACCGAGCGCCTGAGCGACCTGCTGGACTGGCGATACCTCGGCAGAT ATTACATATCTGCACGTCACATGGCCCTGGGTAAAGCATTTCCTGACATCTACCAGTATG AGCTCAAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1909#0      GTTTAGACCGTGAAGGAACGTTTCGGAG--AGAAACTATACGAGTCACTTCTCGTTGGAC 58
consensus_1909#1      -CTTCCCCTCTTACTAAGAGCCTTGGGGCTACACGCCAGCCGAGTGCACCGTCATGGGAG 59
                        **   *  * *   *  *  * ** *  * *  * *  *****      ** * *** 

consensus_1909#0      AGCTGCCTGATGTGTCCAAGATGCTGGATAAAGAGGACTTCACCATAACGAAGCGTGCCA 118
consensus_1909#1      AGCCCATCAAT---CTCAACAAACCTGTCA----GGCTTTGGCTGTTTCATGGAGGAACA 112
                      ***      **     *** *  *  *  *    **  **  *  *  *   * *   **

consensus_1909#0      TCTTTGCAACTCAGAGACAGTGCCAGCCCCCCATCTGCACCCACAACATGCTTGAGGACG 178
consensus_1909#1      CATCGCGGACCCATCAGCA-TATGGTATTTACATCCTGGACCGGAG---GTTTCGAGGAG 168
                        *     ** **    ** *          ****     **  *    * **   *  *

consensus_1909#0      CCAGTGACCCCATCCTAAACTCCGTTCGACGCATCGGCCTCTTTAACAGCTCCTCTGACC 238
consensus_1909#1      TCGACGA----GTCCTGCAATCAGCTCACTTCCTT--CCTGTTT--CAGTTCTGTAAGCA 220
                       *   **     ****  * ** * **    * *   *** ***  *** **      * 

consensus_1909#0      GTGTCAAAATTATCTT-TCATCCGGAGTTTCTTTCATCCACTTCTCCTCTACTTCCCATG 297
consensus_1909#1      GAGTCGGCGCCAGAGGATCATCCAGCGGAACCAAACCGAGCGCCTGAGCGACCTGC--TG 278
                      * ***      *     ****** * *   *         *  **   * ** * *  **

consensus_1909#0      GATTATGAGGACTTTGTGCGAGGTTGC-CACCTGGGCGTCTTCCCCTCTTACTATGAGC- 355
consensus_1909#1      GACTGGCGATACCTCGGCAGATATTACATATCTGCACGTCACATGGCCCTGGGTAAAGCA 338
                      ** *      ** * *   **  ** *  * ***  ****       * *      *** 

consensus_1909#0      CTTGGGGCTACACGCCAGC-CGAGTGCACCGTCATGG 391
consensus_1909#1      TTTCCTGACATCTACCAGTATGAGCTCAAT------- 368
                       **   *  *    ****   ***  **         




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)