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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1909#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 391 fasta sequence
[GTTTAGACCGTGAAGGAACGTTTCGGAGAGAAACTATACGAGTCACTTCTCGTTGGACAGCTGCCTGATGTGTCCAAGATGCTGGATAAAGAGGACTTCACCATAACGAAGCGTGCCATCTTTGCAACTCAGAGACAGTGCCAGCCCCCCATCTGCACCCACAACATGCTTGAGGACGCCAGTGACCCCATCCTAAACTCCGTTCGACGCATCGGCCTCTTTAACAGCTCCTCTGACCGTGTCAAAATTATCTTTCATCCGGAGTTTCTTTCATCCACTTCTCCTCTACTTCCCATGGATTATGAGGACTTTGTGCGAGGTTGCCACCTGGGCGTCTTCCCCTCTTACTATGAGCCTTGGGGCTACACGCCAGCCGAGTGCACCGTCATGG]
[+] EMBL FR0063059 [GTTTAGACCGTGAAGGAACGTTTCGGAGAGAAACTATACGAGTCACTTCTCGTTGGACAGCTGCCTGATGTGTCCAAGATGCTGGATAAAGAGGACTTCACCATAACGAAGCGTGCCATCTTTGCAACTCAGAGACAGTGCCAGCCCCCCATCTGCACCCACAACATGCTTGAGGACGCCAGTGACCCCATCCTAAACTCCGTTCGACGCATCGGCCTCTTTAACAGCTCCTCTGACCGTGTCAAAATTATCTTTCATCCGGAGTTTCTTTCATCCACTTCTCCTCTACTTCCCATGGATTATGAGGACTTTGTGCGAGGTTGCCACCTGGGCGTCTTCCCCTCTTACTATGAGCCTTGGGGCTACACGCCAGCCGAGTGCACCGTCATGG]
consensusID : consensus_1909#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 368 fasta sequence
[CTTCCCCTCTTACTAAGAGCCTTGGGGCTACACGCCAGCCGAGTGCACCGTCATGGGAGAGCCCATCAATCTCAACAAACCTGTCAGGCTTTGGCTGTTTCATGGAGGAACACATCGCGGACCCATCAGCATATGGTATTTACATCCTGGACCGGAGGTTTCGAGGAGTCGACGAGTCCTGCAATCAGCTCACTTCCTTCCTGTTTCAGTTCTGTAAGCAGAGTCGGCGCCAGAGGATCATCCAGCGGAACCAAACCGAGCGCCTGAGCGACCTGCTGGACTGGCGATACCTCGGCAGATATTACATATCTGCACGTCACATGGCCCTGGGTAAAGCATTTCCTGACATCTACCAGTATGAGCTCAAT]
[+] EMBL FR0063939 [CTTCCCCTCTTACTATGAGCCTTGGGGCTACACGCCAGCCGAGTGCACCGTCATGGGAGAGCCCATCAATCTCAACAAACCTGTCAGGCTTTGGCTGTTTCATGGAGGAACACATCGCGGACCCATCAGCATATGGTATTTACATCCTGGACCGGAGGTTTCGAGGAGTCGACGAGTCCTGCAATCAGCTCACTTCCTTCCTGTTTCAGTTCTGTAAGCAGAGTCGGCGCCAGAGGATCATCCAGCGGAACCAAACCGAGCGCCTGAGCGACCTGCTGGACTGGCGATACCTCGGCAGATATTACATATCTGCACGTCACATGGCCCTGGGTAAAGCATTTCCTGACATCTACCAGTATGAGCTCAAT]
[+] EMBL FR0057557 [ CTAAGAGCCTTGGGGCTACACTCCAGCCGAGTGCACCGTCATGGGA ATCCCATCAATCTCAACAAACCTGTCAGGCTTTGGCTGTTTCATGGAGGAACACATCGCGGACCCATCAGCATATGGTATTTACATCCTGGAC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1909#0 GTTTAGACCGTGAAGGAACGTTTCGGAG--AGAAACTATACGAGTCACTTCTCGTTGGAC 58
consensus_1909#1 -CTTCCCCTCTTACTAAGAGCCTTGGGGCTACACGCCAGCCGAGTGCACCGTCATGGGAG 59
** * * * * * * ** * * * * * ***** ** * ***
consensus_1909#0 AGCTGCCTGATGTGTCCAAGATGCTGGATAAAGAGGACTTCACCATAACGAAGCGTGCCA 118
consensus_1909#1 AGCCCATCAAT---CTCAACAAACCTGTCA----GGCTTTGGCTGTTTCATGGAGGAACA 112
*** ** *** * * * * ** ** * * * * * **
consensus_1909#0 TCTTTGCAACTCAGAGACAGTGCCAGCCCCCCATCTGCACCCACAACATGCTTGAGGACG 178
consensus_1909#1 CATCGCGGACCCATCAGCA-TATGGTATTTACATCCTGGACCGGAG---GTTTCGAGGAG 168
* ** ** ** * **** ** * * ** * *
consensus_1909#0 CCAGTGACCCCATCCTAAACTCCGTTCGACGCATCGGCCTCTTTAACAGCTCCTCTGACC 238
consensus_1909#1 TCGACGA----GTCCTGCAATCAGCTCACTTCCTT--CCTGTTT--CAGTTCTGTAAGCA 220
* ** **** * ** * ** * * *** *** *** ** *
consensus_1909#0 GTGTCAAAATTATCTT-TCATCCGGAGTTTCTTTCATCCACTTCTCCTCTACTTCCCATG 297
consensus_1909#1 GAGTCGGCGCCAGAGGATCATCCAGCGGAACCAAACCGAGCGCCTGAGCGACCTGC--TG 278
* *** * ****** * * * * ** * ** * * **
consensus_1909#0 GATTATGAGGACTTTGTGCGAGGTTGC-CACCTGGGCGTCTTCCCCTCTTACTATGAGC- 355
consensus_1909#1 GACTGGCGATACCTCGGCAGATATTACATATCTGCACGTCACATGGCCCTGGGTAAAGCA 338
** * ** * * ** ** * * *** **** * * ***
consensus_1909#0 CTTGGGGCTACACGCCAGC-CGAGTGCACCGTCATGG 391
consensus_1909#1 TTTCCTGACATCTACCAGTATGAGCTCAAT------- 368
** * * **** *** **
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |