These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1909#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 391 fasta sequence [GTTTAGACCGTGAAGGAACGTTTCGGAGAGAAACTATACGAGTCACTTCTCGTTGGACAGCTGCCTGATGTGTCCAAGATGCTGGATAAAGAGGACTTCACCATAACGAAGCGTGCCATCTTTGCAACTCAGAGACAGTGCCAGCCCCCCATCTGCACCCACAACATGCTTGAGGACGCCAGTGACCCCATCCTAAACTCCGTTCGACGCATCGGCCTCTTTAACAGCTCCTCTGACCGTGTCAAAATTATCTTTCATCCGGAGTTTCTTTCATCCACTTCTCCTCTACTTCCCATGGATTATGAGGACTTTGTGCGAGGTTGCCACCTGGGCGTCTTCCCCTCTTACTATGAGCCTTGGGGCTACACGCCAGCCGAGTGCACCGTCATGG] [+] EMBL FR0063059 [GTTTAGACCGTGAAGGAACGTTTCGGAGAGAAACTATACGAGTCACTTCTCGTTGGACAGCTGCCTGATGTGTCCAAGATGCTGGATAAAGAGGACTTCACCATAACGAAGCGTGCCATCTTTGCAACTCAGAGACAGTGCCAGCCCCCCATCTGCACCCACAACATGCTTGAGGACGCCAGTGACCCCATCCTAAACTCCGTTCGACGCATCGGCCTCTTTAACAGCTCCTCTGACCGTGTCAAAATTATCTTTCATCCGGAGTTTCTTTCATCCACTTCTCCTCTACTTCCCATGGATTATGAGGACTTTGTGCGAGGTTGCCACCTGGGCGTCTTCCCCTCTTACTATGAGCCTTGGGGCTACACGCCAGCCGAGTGCACCGTCATGG] consensusID : consensus_1909#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 368 fasta sequence [CTTCCCCTCTTACTAAGAGCCTTGGGGCTACACGCCAGCCGAGTGCACCGTCATGGGAGAGCCCATCAATCTCAACAAACCTGTCAGGCTTTGGCTGTTTCATGGAGGAACACATCGCGGACCCATCAGCATATGGTATTTACATCCTGGACCGGAGGTTTCGAGGAGTCGACGAGTCCTGCAATCAGCTCACTTCCTTCCTGTTTCAGTTCTGTAAGCAGAGTCGGCGCCAGAGGATCATCCAGCGGAACCAAACCGAGCGCCTGAGCGACCTGCTGGACTGGCGATACCTCGGCAGATATTACATATCTGCACGTCACATGGCCCTGGGTAAAGCATTTCCTGACATCTACCAGTATGAGCTCAAT] [+] EMBL FR0063939 [CTTCCCCTCTTACTATGAGCCTTGGGGCTACACGCCAGCCGAGTGCACCGTCATGGGAGAGCCCATCAATCTCAACAAACCTGTCAGGCTTTGGCTGTTTCATGGAGGAACACATCGCGGACCCATCAGCATATGGTATTTACATCCTGGACCGGAGGTTTCGAGGAGTCGACGAGTCCTGCAATCAGCTCACTTCCTTCCTGTTTCAGTTCTGTAAGCAGAGTCGGCGCCAGAGGATCATCCAGCGGAACCAAACCGAGCGCCTGAGCGACCTGCTGGACTGGCGATACCTCGGCAGATATTACATATCTGCACGTCACATGGCCCTGGGTAAAGCATTTCCTGACATCTACCAGTATGAGCTCAAT] [+] EMBL FR0057557 [ CTAAGAGCCTTGGGGCTACACTCCAGCCGAGTGCACCGTCATGGGA ATCCCATCAATCTCAACAAACCTGTCAGGCTTTGGCTGTTTCATGGAGGAACACATCGCGGACCCATCAGCATATGGTATTTACATCCTGGAC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1909#0 GTTTAGACCGTGAAGGAACGTTTCGGAG--AGAAACTATACGAGTCACTTCTCGTTGGAC 58 consensus_1909#1 -CTTCCCCTCTTACTAAGAGCCTTGGGGCTACACGCCAGCCGAGTGCACCGTCATGGGAG 59 ** * * * * * * ** * * * * * ***** ** * *** consensus_1909#0 AGCTGCCTGATGTGTCCAAGATGCTGGATAAAGAGGACTTCACCATAACGAAGCGTGCCA 118 consensus_1909#1 AGCCCATCAAT---CTCAACAAACCTGTCA----GGCTTTGGCTGTTTCATGGAGGAACA 112 *** ** *** * * * * ** ** * * * * * ** consensus_1909#0 TCTTTGCAACTCAGAGACAGTGCCAGCCCCCCATCTGCACCCACAACATGCTTGAGGACG 178 consensus_1909#1 CATCGCGGACCCATCAGCA-TATGGTATTTACATCCTGGACCGGAG---GTTTCGAGGAG 168 * ** ** ** * **** ** * * ** * * consensus_1909#0 CCAGTGACCCCATCCTAAACTCCGTTCGACGCATCGGCCTCTTTAACAGCTCCTCTGACC 238 consensus_1909#1 TCGACGA----GTCCTGCAATCAGCTCACTTCCTT--CCTGTTT--CAGTTCTGTAAGCA 220 * ** **** * ** * ** * * *** *** *** ** * consensus_1909#0 GTGTCAAAATTATCTT-TCATCCGGAGTTTCTTTCATCCACTTCTCCTCTACTTCCCATG 297 consensus_1909#1 GAGTCGGCGCCAGAGGATCATCCAGCGGAACCAAACCGAGCGCCTGAGCGACCTGC--TG 278 * *** * ****** * * * * ** * ** * * ** consensus_1909#0 GATTATGAGGACTTTGTGCGAGGTTGC-CACCTGGGCGTCTTCCCCTCTTACTATGAGC- 355 consensus_1909#1 GACTGGCGATACCTCGGCAGATATTACATATCTGCACGTCACATGGCCCTGGGTAAAGCA 338 ** * ** * * ** ** * * *** **** * * *** consensus_1909#0 CTTGGGGCTACACGCCAGC-CGAGTGCACCGTCATGG 391 consensus_1909#1 TTTCCTGACATCTACCAGTATGAGCTCAAT------- 368 ** * * **** *** ** |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |