These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1915#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 778 fasta sequence [CGTCGCCCCTTCTGTTCCAAAAGTTGGCTGCAACACATTGCCCTATACATTCATAATTGTAACATTACCCAGGTCAGTAGTACTCGGCAAAATGGCAGTGCCCCCAGCATATGTAGACCTCGGGAAATCAGCAAAGGACATCTTCAATAAAGGCTACGGTTTTGGACTGGTTAAGCTTGATGTGAAGACAAAGTCTTCCAGTGGCGTGGAGTTTAAAACATCTGGCTCCTCCAACATTGACAACAGCAAGGTCACAGGCACCCTGGAGACCAAGTACAAGTGGGCCGAGTACGGGCTGACGTTCACCGAGAAGTGGAGCACAGAAAACACTCTGGGAACTGAAGTTTGCGTTGAAGATCAGATCACCAAAGGGCTGAAGCTCAATTTTGAGACGACATTTTCACCAAACACCGGCAAGAAGAGCGGCAAGATCAAGACGGCGTACAAACGGGAGTACGTTAACGCAGGCCTTGACGTGGACTTAGATTTTGCTGGTCCCACTATCCATGGAGCGGCCGTGGCCGGTTATGACGGTTGGCTGGCGGGCTACCAGATGACAATCGACTCCGCCAAATCCAAGATGACCCACAGCAACTTTTCTATCGGCTACAAGACTGGCGACTTCCAACTCCACACCAACGTAAACAACGGGTCAGAGTTCGGCGGCTCCATTTACCAGAAGGTCAATGACAAACTGGAGACTGCTGTGAATCTGGCCTGGACAGCGGGAAGCAACGGCACCCGCTTTGGAATGGCTGCCAAATACCAGCTTGATTCC] [+] EMBL CA846141 [CTTCGCCCCTTCTGTTCCAAAAGTTGGCTGCAACACATTGCCCTATACATTCATAATTGTAACATTACCCAGGTCAGTAGTACTCGGCAAAATGGCAGTGCCCCCAGCATATGTAGACCTCGGGAAATCAGCAAAGGACATCTTCAATAAAGGCTACGGTTTTGGACTGGTTAAGCTTGATGTGAAGACAAAGTCTTCCAGTGGCGTGGAGTTTAAAACATCTGGCTCCTCCAACATTGACAACAGCAAGGTCACAGGCACCCTGGAGACCAAGTACAAGTGGGCCGAGTACGGGCTGACGTTCACCGAGAAGTGGAGCACAGAAAACACTCTGGGAACTGAAGTTTGCGTTGAAGATCAGATCACCAAAGGGCTGAAGCTCAATTTTGAGACGACATTTTCACCAAACACCGGCAAGAAGAGCGGCAAGATCAAGACGGCGTACAAACGGGAGTACGTTAACGCAGGCCTTGACGTGGACTTAGATTTTGCTGGTCCCACTATCCATGGAGCGGCCGTGGCCGGTTATGACGGTTGGCTGGCGGGCTACCAGATGACAATCGACTCCGCCAAATCCAAGATGACCCACAGCAACTTTTCTATCGGCTACAAGACTGGCGACTTCCAACTCCACACCAACGTAAACAACGGGTCAGAGTTCGGCGGCTCCATTTACCAGAAGGTCAATGACAAACTGGAGACTGCTGTGAATCTGGCCTGGACAGCGGGAAGCAACGGCACCCGCTTTGGAATTGCTGCCAAATACCAGCTTGATTCC] [+] EMBL CA846290 [CGTTGCCCCTTCTGTTCCAAAAGTTGGCTGCAACACATTGCCCTATACATTCATAATTGTAACATTACCCAGGTCAGTAGTACTCGGCAAAATGGCAGTGCCCCCAGCATATGTAGACCTCGGGAAATCAGCAAAGGACATCTTCAATAAAGGCTACGGTTTTGGACTGGTTAAGCTTGATGTGAAGACAAAGTCTTCCAGTGGCGTGGAGTTTAAAACATCTGGCTCCTCCAACATTGACAACAGCAAGGTCACAGGCACCCTGGAGACCAAGTACAAGTGGGCCGAGTACGGGCTGACGTTCACCGAGAAGTGGAGCACAGAAAACACTCTGGGAACTGAAGTTTGCGTTGAAGATCAGATCACCAAAGGGCTGAAGCTCAATTTTGAGACGACATTTTCACCAAACACCGGCAAGAAGAGCGGCAAGATCAAGACGGCGTACAAACGGGAGTACGTTAACGCAGGCCTTGACGTGGACTTAGATTTTGCTGGTCCCACTATCCATGGAGCGGCCGTGGTCGGTTATGACGGTTGGCTGGCGGGCTACCAGATGACAATCGACTCCGCCAAATCCAAGATGACCCACAGCAACTTTTCTATCGGCTACAAGACTGGCGACTTCCAACTCCACACCAACGTAAACAACGGGTCAGAGTTCGGCGGCTCCATTTACCAGAAGGTCAATGACAAACTGGAGACTGCTGTGAATCTGGCCTGAACAGCCGGAAGCAACGGCACCCGCTTTGGAATGCCT ] consensusID : consensus_1915#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 604 fasta sequence [CCCTTCTGTTCCAAAAGTTGGCTGCAAACTTTGCCCTATACATTCATAATTGTAACATTACCCAGGCAAAATGGCAGTGCCCCCAGCATATGTAGACCTCGGGAAATCAGCAAAGGACATCTTCAATAAAGGCTACGGTTTTGGACTGGTTAAGCTTGATGTGAAGACAAAGTCTTCCAGTGGCGTGGAGTTTAAAACATCTGGCTCCTCCAACATTGACAACAGCAAGGTCACAGGCACCCTGGAGACCAAGTACAAGTGGGCCGAGTACGGGCTGACGTTCACCGAGAAGTGGAGCACAGAAAACACTCTGGGAACTGAAGTTTGCGTTGAAGATCAGATCACCAAAGGGCTGAAGCTCAATTTTGAGACGACATTTTCACCAAACACCGGCAAGAAGAGCGGCAAGATCAAGACGGCGTACAAACGGGAGTACGTTAACGCAGGCCTTGACGTGGACTTAGATTTTGCTGGTCCCACTATCCATGGAGCGGCCGTGGCCGGTTATGACGGTTGGCTGGCGGGCTACCAGATGACAATCGACTCCGCCAAATCCAAGATGACCCACAGCAACTTTTCTATCGGCTACAAGACTGGCGACTTC] [+] EMBL BU805589 [CCCTTCTGTTCCAAAAGTTGGCTGCAAACTTTGCCCTATACATTCATAATTGTAACATTACCCAGGCAAAATGGCAGTGCCCCCAGCATATGTAGACCTCGGGAAATCAGCAAAGGACATCTTCAATAAAGGCTACGGTTTTGGACTGGTTAAGCTTGATGTGAAGACAAAGTCTTCCAGTGGCGTGGAGTTTAAAACATCTGGCTCCTCCAACATTGACAACAGCAAGGTCACAGGCACCCTGGAGACCAAGTACAAGTGGGCCGAGTACGGGCTGACGTTCACCGAGAAGTGGAGCACAGAAAACACTCTGGGAACTGAAGTTTGCGTTGAAGATCAGATCACCAAAGGGCTGAAGCTCAATTTTGAGACGACATTTTCACCAAACACCGGCAAGAAGAGCGGCAAGATCAAGACGGCGTACAAACGGGAGTACGTTAACGCAGGCCTTGACGTGGACTTAGATTTTGCTGGTCCCACTATCCATGGAGCGGCCGTGGCCGGTTATGACGGTTGGCTGGCGGGCTACCAGATGACAATCGACTCCGCCAAATCCAAGATGACCCACAGCAACTTTTCTATCGGCTACAAGACTGGCGACTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1915#0 CGTCGCCCCTTCTGTTCCAAAAGTTGGCTGCAACACATTGCCCTATACATTCATAATTGT 60 consensus_1915#1 ------CCCTTCTGTTCCAAAAGTTGGCTGCAA-ACTTTGCCCTATACATTCATAATTGT 53 *************************** ** *********************** consensus_1915#0 AACATTACCCAGGTCAGTAGTACTCGGCAAAATGGCAGTGCCCCCAGCATATGTAGACCT 120 consensus_1915#1 AACATTACCCAGG--------------CAAAATGGCAGTGCCCCCAGCATATGTAGACCT 99 ************* ********************************* consensus_1915#0 CGGGAAATCAGCAAAGGACATCTTCAATAAAGGCTACGGTTTTGGACTGGTTAAGCTTGA 180 consensus_1915#1 CGGGAAATCAGCAAAGGACATCTTCAATAAAGGCTACGGTTTTGGACTGGTTAAGCTTGA 159 ************************************************************ consensus_1915#0 TGTGAAGACAAAGTCTTCCAGTGGCGTGGAGTTTAAAACATCTGGCTCCTCCAACATTGA 240 consensus_1915#1 TGTGAAGACAAAGTCTTCCAGTGGCGTGGAGTTTAAAACATCTGGCTCCTCCAACATTGA 219 ************************************************************ consensus_1915#0 CAACAGCAAGGTCACAGGCACCCTGGAGACCAAGTACAAGTGGGCCGAGTACGGGCTGAC 300 consensus_1915#1 CAACAGCAAGGTCACAGGCACCCTGGAGACCAAGTACAAGTGGGCCGAGTACGGGCTGAC 279 ************************************************************ consensus_1915#0 GTTCACCGAGAAGTGGAGCACAGAAAACACTCTGGGAACTGAAGTTTGCGTTGAAGATCA 360 consensus_1915#1 GTTCACCGAGAAGTGGAGCACAGAAAACACTCTGGGAACTGAAGTTTGCGTTGAAGATCA 339 ************************************************************ consensus_1915#0 GATCACCAAAGGGCTGAAGCTCAATTTTGAGACGACATTTTCACCAAACACCGGCAAGAA 420 consensus_1915#1 GATCACCAAAGGGCTGAAGCTCAATTTTGAGACGACATTTTCACCAAACACCGGCAAGAA 399 ************************************************************ consensus_1915#0 GAGCGGCAAGATCAAGACGGCGTACAAACGGGAGTACGTTAACGCAGGCCTTGACGTGGA 480 consensus_1915#1 GAGCGGCAAGATCAAGACGGCGTACAAACGGGAGTACGTTAACGCAGGCCTTGACGTGGA 459 ************************************************************ consensus_1915#0 CTTAGATTTTGCTGGTCCCACTATCCATGGAGCGGCCGTGGCCGGTTATGACGGTTGGCT 540 consensus_1915#1 CTTAGATTTTGCTGGTCCCACTATCCATGGAGCGGCCGTGGCCGGTTATGACGGTTGGCT 519 ************************************************************ consensus_1915#0 GGCGGGCTACCAGATGACAATCGACTCCGCCAAATCCAAGATGACCCACAGCAACTTTTC 600 consensus_1915#1 GGCGGGCTACCAGATGACAATCGACTCCGCCAAATCCAAGATGACCCACAGCAACTTTTC 579 ************************************************************ consensus_1915#0 TATCGGCTACAAGACTGGCGACTTCCAACTCCACACCAACGTAAACAACGGGTCAGAGTT 660 consensus_1915#1 TATCGGCTACAAGACTGGCGACTTC----------------------------------- 604 ************************* consensus_1915#0 CGGCGGCTCCATTTACCAGAAGGTCAATGACAAACTGGAGACTGCTGTGAATCTGGCCTG 720 consensus_1915#1 ------------------------------------------------------------ consensus_1915#0 GACAGCGGGAAGCAACGGCACCCGCTTTGGAATGGCTGCCAAATACCAGCTTGATTCC 778 consensus_1915#1 ---------------------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |