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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1915#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 778 fasta sequence
[CGTCGCCCCTTCTGTTCCAAAAGTTGGCTGCAACACATTGCCCTATACATTCATAATTGTAACATTACCCAGGTCAGTAGTACTCGGCAAAATGGCAGTGCCCCCAGCATATGTAGACCTCGGGAAATCAGCAAAGGACATCTTCAATAAAGGCTACGGTTTTGGACTGGTTAAGCTTGATGTGAAGACAAAGTCTTCCAGTGGCGTGGAGTTTAAAACATCTGGCTCCTCCAACATTGACAACAGCAAGGTCACAGGCACCCTGGAGACCAAGTACAAGTGGGCCGAGTACGGGCTGACGTTCACCGAGAAGTGGAGCACAGAAAACACTCTGGGAACTGAAGTTTGCGTTGAAGATCAGATCACCAAAGGGCTGAAGCTCAATTTTGAGACGACATTTTCACCAAACACCGGCAAGAAGAGCGGCAAGATCAAGACGGCGTACAAACGGGAGTACGTTAACGCAGGCCTTGACGTGGACTTAGATTTTGCTGGTCCCACTATCCATGGAGCGGCCGTGGCCGGTTATGACGGTTGGCTGGCGGGCTACCAGATGACAATCGACTCCGCCAAATCCAAGATGACCCACAGCAACTTTTCTATCGGCTACAAGACTGGCGACTTCCAACTCCACACCAACGTAAACAACGGGTCAGAGTTCGGCGGCTCCATTTACCAGAAGGTCAATGACAAACTGGAGACTGCTGTGAATCTGGCCTGGACAGCGGGAAGCAACGGCACCCGCTTTGGAATGGCTGCCAAATACCAGCTTGATTCC]
[+] EMBL CA846141 [CTTCGCCCCTTCTGTTCCAAAAGTTGGCTGCAACACATTGCCCTATACATTCATAATTGTAACATTACCCAGGTCAGTAGTACTCGGCAAAATGGCAGTGCCCCCAGCATATGTAGACCTCGGGAAATCAGCAAAGGACATCTTCAATAAAGGCTACGGTTTTGGACTGGTTAAGCTTGATGTGAAGACAAAGTCTTCCAGTGGCGTGGAGTTTAAAACATCTGGCTCCTCCAACATTGACAACAGCAAGGTCACAGGCACCCTGGAGACCAAGTACAAGTGGGCCGAGTACGGGCTGACGTTCACCGAGAAGTGGAGCACAGAAAACACTCTGGGAACTGAAGTTTGCGTTGAAGATCAGATCACCAAAGGGCTGAAGCTCAATTTTGAGACGACATTTTCACCAAACACCGGCAAGAAGAGCGGCAAGATCAAGACGGCGTACAAACGGGAGTACGTTAACGCAGGCCTTGACGTGGACTTAGATTTTGCTGGTCCCACTATCCATGGAGCGGCCGTGGCCGGTTATGACGGTTGGCTGGCGGGCTACCAGATGACAATCGACTCCGCCAAATCCAAGATGACCCACAGCAACTTTTCTATCGGCTACAAGACTGGCGACTTCCAACTCCACACCAACGTAAACAACGGGTCAGAGTTCGGCGGCTCCATTTACCAGAAGGTCAATGACAAACTGGAGACTGCTGTGAATCTGGCCTGGACAGCGGGAAGCAACGGCACCCGCTTTGGAATTGCTGCCAAATACCAGCTTGATTCC]
[+] EMBL CA846290 [CGTTGCCCCTTCTGTTCCAAAAGTTGGCTGCAACACATTGCCCTATACATTCATAATTGTAACATTACCCAGGTCAGTAGTACTCGGCAAAATGGCAGTGCCCCCAGCATATGTAGACCTCGGGAAATCAGCAAAGGACATCTTCAATAAAGGCTACGGTTTTGGACTGGTTAAGCTTGATGTGAAGACAAAGTCTTCCAGTGGCGTGGAGTTTAAAACATCTGGCTCCTCCAACATTGACAACAGCAAGGTCACAGGCACCCTGGAGACCAAGTACAAGTGGGCCGAGTACGGGCTGACGTTCACCGAGAAGTGGAGCACAGAAAACACTCTGGGAACTGAAGTTTGCGTTGAAGATCAGATCACCAAAGGGCTGAAGCTCAATTTTGAGACGACATTTTCACCAAACACCGGCAAGAAGAGCGGCAAGATCAAGACGGCGTACAAACGGGAGTACGTTAACGCAGGCCTTGACGTGGACTTAGATTTTGCTGGTCCCACTATCCATGGAGCGGCCGTGGTCGGTTATGACGGTTGGCTGGCGGGCTACCAGATGACAATCGACTCCGCCAAATCCAAGATGACCCACAGCAACTTTTCTATCGGCTACAAGACTGGCGACTTCCAACTCCACACCAACGTAAACAACGGGTCAGAGTTCGGCGGCTCCATTTACCAGAAGGTCAATGACAAACTGGAGACTGCTGTGAATCTGGCCTGAACAGCCGGAAGCAACGGCACCCGCTTTGGAATGCCT ]
consensusID : consensus_1915#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 604 fasta sequence
[CCCTTCTGTTCCAAAAGTTGGCTGCAAACTTTGCCCTATACATTCATAATTGTAACATTACCCAGGCAAAATGGCAGTGCCCCCAGCATATGTAGACCTCGGGAAATCAGCAAAGGACATCTTCAATAAAGGCTACGGTTTTGGACTGGTTAAGCTTGATGTGAAGACAAAGTCTTCCAGTGGCGTGGAGTTTAAAACATCTGGCTCCTCCAACATTGACAACAGCAAGGTCACAGGCACCCTGGAGACCAAGTACAAGTGGGCCGAGTACGGGCTGACGTTCACCGAGAAGTGGAGCACAGAAAACACTCTGGGAACTGAAGTTTGCGTTGAAGATCAGATCACCAAAGGGCTGAAGCTCAATTTTGAGACGACATTTTCACCAAACACCGGCAAGAAGAGCGGCAAGATCAAGACGGCGTACAAACGGGAGTACGTTAACGCAGGCCTTGACGTGGACTTAGATTTTGCTGGTCCCACTATCCATGGAGCGGCCGTGGCCGGTTATGACGGTTGGCTGGCGGGCTACCAGATGACAATCGACTCCGCCAAATCCAAGATGACCCACAGCAACTTTTCTATCGGCTACAAGACTGGCGACTTC]
[+] EMBL BU805589 [CCCTTCTGTTCCAAAAGTTGGCTGCAAACTTTGCCCTATACATTCATAATTGTAACATTACCCAGGCAAAATGGCAGTGCCCCCAGCATATGTAGACCTCGGGAAATCAGCAAAGGACATCTTCAATAAAGGCTACGGTTTTGGACTGGTTAAGCTTGATGTGAAGACAAAGTCTTCCAGTGGCGTGGAGTTTAAAACATCTGGCTCCTCCAACATTGACAACAGCAAGGTCACAGGCACCCTGGAGACCAAGTACAAGTGGGCCGAGTACGGGCTGACGTTCACCGAGAAGTGGAGCACAGAAAACACTCTGGGAACTGAAGTTTGCGTTGAAGATCAGATCACCAAAGGGCTGAAGCTCAATTTTGAGACGACATTTTCACCAAACACCGGCAAGAAGAGCGGCAAGATCAAGACGGCGTACAAACGGGAGTACGTTAACGCAGGCCTTGACGTGGACTTAGATTTTGCTGGTCCCACTATCCATGGAGCGGCCGTGGCCGGTTATGACGGTTGGCTGGCGGGCTACCAGATGACAATCGACTCCGCCAAATCCAAGATGACCCACAGCAACTTTTCTATCGGCTACAAGACTGGCGACTTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1915#0 CGTCGCCCCTTCTGTTCCAAAAGTTGGCTGCAACACATTGCCCTATACATTCATAATTGT 60
consensus_1915#1 ------CCCTTCTGTTCCAAAAGTTGGCTGCAA-ACTTTGCCCTATACATTCATAATTGT 53
*************************** ** ***********************
consensus_1915#0 AACATTACCCAGGTCAGTAGTACTCGGCAAAATGGCAGTGCCCCCAGCATATGTAGACCT 120
consensus_1915#1 AACATTACCCAGG--------------CAAAATGGCAGTGCCCCCAGCATATGTAGACCT 99
************* *********************************
consensus_1915#0 CGGGAAATCAGCAAAGGACATCTTCAATAAAGGCTACGGTTTTGGACTGGTTAAGCTTGA 180
consensus_1915#1 CGGGAAATCAGCAAAGGACATCTTCAATAAAGGCTACGGTTTTGGACTGGTTAAGCTTGA 159
************************************************************
consensus_1915#0 TGTGAAGACAAAGTCTTCCAGTGGCGTGGAGTTTAAAACATCTGGCTCCTCCAACATTGA 240
consensus_1915#1 TGTGAAGACAAAGTCTTCCAGTGGCGTGGAGTTTAAAACATCTGGCTCCTCCAACATTGA 219
************************************************************
consensus_1915#0 CAACAGCAAGGTCACAGGCACCCTGGAGACCAAGTACAAGTGGGCCGAGTACGGGCTGAC 300
consensus_1915#1 CAACAGCAAGGTCACAGGCACCCTGGAGACCAAGTACAAGTGGGCCGAGTACGGGCTGAC 279
************************************************************
consensus_1915#0 GTTCACCGAGAAGTGGAGCACAGAAAACACTCTGGGAACTGAAGTTTGCGTTGAAGATCA 360
consensus_1915#1 GTTCACCGAGAAGTGGAGCACAGAAAACACTCTGGGAACTGAAGTTTGCGTTGAAGATCA 339
************************************************************
consensus_1915#0 GATCACCAAAGGGCTGAAGCTCAATTTTGAGACGACATTTTCACCAAACACCGGCAAGAA 420
consensus_1915#1 GATCACCAAAGGGCTGAAGCTCAATTTTGAGACGACATTTTCACCAAACACCGGCAAGAA 399
************************************************************
consensus_1915#0 GAGCGGCAAGATCAAGACGGCGTACAAACGGGAGTACGTTAACGCAGGCCTTGACGTGGA 480
consensus_1915#1 GAGCGGCAAGATCAAGACGGCGTACAAACGGGAGTACGTTAACGCAGGCCTTGACGTGGA 459
************************************************************
consensus_1915#0 CTTAGATTTTGCTGGTCCCACTATCCATGGAGCGGCCGTGGCCGGTTATGACGGTTGGCT 540
consensus_1915#1 CTTAGATTTTGCTGGTCCCACTATCCATGGAGCGGCCGTGGCCGGTTATGACGGTTGGCT 519
************************************************************
consensus_1915#0 GGCGGGCTACCAGATGACAATCGACTCCGCCAAATCCAAGATGACCCACAGCAACTTTTC 600
consensus_1915#1 GGCGGGCTACCAGATGACAATCGACTCCGCCAAATCCAAGATGACCCACAGCAACTTTTC 579
************************************************************
consensus_1915#0 TATCGGCTACAAGACTGGCGACTTCCAACTCCACACCAACGTAAACAACGGGTCAGAGTT 660
consensus_1915#1 TATCGGCTACAAGACTGGCGACTTC----------------------------------- 604
*************************
consensus_1915#0 CGGCGGCTCCATTTACCAGAAGGTCAATGACAAACTGGAGACTGCTGTGAATCTGGCCTG 720
consensus_1915#1 ------------------------------------------------------------
consensus_1915#0 GACAGCGGGAAGCAACGGCACCCGCTTTGGAATGGCTGCCAAATACCAGCTTGATTCC 778
consensus_1915#1 ----------------------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |