These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1932#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 691 fasta sequence [AGCAAGCCCTGAAGCGTTTGAGCCCAAAAAATGGATGAGCTGCAGTTCAAATCACAGGCTAATTTTTAATTTCTTCACATGCCTCACTCTTTGCCTCAAGCACTTTTTTAGATCTTTCTCTCTCTTTCTTCCCTGTGACACTCTTTTTCCTCGCTGGTTGCCCGACACCTGTTCTCATCTGTTCAAACACACTCAGGAAAACCCTGACAAGTTCGTTTGTTATCAACACTCCATTCAGGTAGCTCTTGCGCGCGTAGAAATTATGAATGTATTTTCTCACGTAGAATCCCCGCCATAACTTTTGGATCTTGACTGCCATCTCCTTGAAGAAATTCATCTTCGTAATAAAATATGCTGCCTTCACCATTTGTATGAAATGTGCATTAGCTCTGAAGCTGCGCCATATCCTCTGGATAATGACTGCCTTCTTGAGCAGATGGCTGAGGTAGGTGCGCACCTTACAGCCTCGGAACCAGCTCTGAATCAGGACAGCAGCCTGATGTTCCTTCTTCCTGTTTTGCTCAGCTTGACTGTGTGCCTGGGCTTTTTCCTTTATGAAAACTTCAATTTCTCTTTGCAGACTTAACAGCTCCGCCATGTCGTTTAGCGTCTTCCCGTCGTCTTGGTAACACAACGAAGAAGCGTTCCAGTGCTGCCCACACCTCAACAAGGACAGGGGCATAAATTTGGT] [+] EMBL CA329428 [AGCAAGCCCTGAAGCGTTTGAGCCCAAAAAATGGATGAGCTGCAGTTCAAATCACAGGCTAATTTTTAATTTCTTCACATGCCTCACTCTTTGCCTCAAGCACTTTTTTAGATCTTTCTCTCTCTTTCTTCCCTGTGACACTCTTTTTCCTCGCTGGTTGCCCGACACCTGTTCTCATCTGTTCAAACACACTCAGGAAAACCCTGACAAGTTCGTTTGTTATTTTCACTCCATTCAGGTAGCTCTTGCGCGCGTAGAAATTATGAATGTATTTTCTCACGTAGAATCCCCGCCATAACTTTTGGATCTTGACTGCCATCTCCTTGAAGAAATTCATCTTCGTAATAAAATATGC ] [-] EMBL CA590464 [ TTTCTTCCCTGTGACACTCTTTTTCCTCGCTGGTTGCCCGACACCTGTTCTCATCTGTTCAAACACACTCAGGAAAACCCTGACAAGTTCGTTTGTTATCAACACTCCATTCAGGTAGTTCTTGCGTGTGTAGAAATTATGAATGTATTTTCTCACGTAGAATCCCCGCCATAACTTTTGGATCTTGACTGCCATCTCCTTGTAGAAATTCATCTTCGTAATAAAATATGCTGCCTTCACCATTTGTATGAAATGTGCATTAGCTCTGAAGCTGCGCCATATCCTCTGGATAATGACTGCCTTCTTGAGCAGATGGCTGAGGTAGGTGCGCACCTTACAGCCTCGGAACCAGCTCTGAATCAGGACAGCAGCCTGATGTTCCTTCTTCCTGTTTTGCTCAGCTTGACTGTGTGCCTGGGCTTTTTCCTTTATGAAAACTTCAATTTCTCTTTGCAGACTTAACAGCTCCGCCATGTCGTTTAGCGTCTTCCCGTCGTCTTGGTAACACAACGAAGAAGCGTTCCAGTGCTGCCCACACCTCAACAAGGACAGGGGCATAAATTTGGT] consensusID : consensus_1932#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 541 fasta sequence [CTCATCAGGGGCTGGTCTGAATGGAGAGTTGAAAATCCCCGGTCGCTGTTTTGTGCTCAGAAGATGGTGAGACCTGTGGGCTTGGTTGGCTCTCTCTCTCTCCTTTTCCATCATCTGAAAATTCTCTCTTTCTCTCCTGTGGACTTCCTCAAGTTTATCCATCTCCCTCCTGACAAGTTCGTTTGTTATCAACACTCCATTCAGGTAGTTCTTGCGTGTGTAGAAATTATGAATGTATTTTCTCACGTAGAATCCCCGCCATAACTTTTGGATCTTGACTGCCATCTCCTTGTAGAAATTCATCTTCGTAATAAAATATGCTGCCTTCACCATTTGTATGAAATGTGCATTAGCTCTGAAGCTGCGCCATATCCTCTGGATAATGACTGCCTTCTTGAGCAGATGGCTGAGGTAGGTGCGCACCTTACAGCCTCGGAACCAGCTCTGAATCAGGACAGCAGCCTGATGTTCCTTCTTCCTGTTTTGCTCAGCTTGACTTGTTTTTGGTATCTCTTTCTATAGTTACTATAGAAAGAAATCT] [-] EMBL BU807750 [CTCATCAGGGGCTGGTCTGAATGGAGAGTTGAAAATCCCCGGTCGCTGTTTTGTGCTCAGAAGATGGTGAGACCTGTGGGCTTGGTTGGCTCTCTCTCTCTCCTTTTCCATCATCTGAAAATTCTCTCTTTCTCTCCTGTGGACTTCCTCAAGTTTATCCATCTCCCTCCTGACAAGTTCGTTTGTTATCAACACTCCATTCAGGTAGTTCTTGCGTGTGTAGAAATTATGAATGTATTTTCTCACGTAGAATCCCCGCCATAACTTTTGGATCTTGACTGCCATCTCCTTGTAGAAATTCATCTTCGTAATAAAATATGCTGCCTTCACCATTTGTATGAAATGTGCATTAGCTCTGAAGCTGCGCCATATCCTCTGGATAATGACTGCCTTCTTGAGCAGATGGCTGAGGTAGGTGCGCACCTTACAGCCTCGGAACCAGCTCTGAATCAGGACAGCAGCCTGATGTTCCTTCTTCCTGTTTTGCTCAGCTTGACTTGTTTTTGGTATCTCTTTCTATAGTTACTATAGAAAGAAATCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1932#0 AGCAAGCCCTGAAGCGTTTGAGCCCAAAAAATGGATGAGCTGCAGTTCAAATCACAGGCT 60 consensus_1932#1 ------CTCATCAGGGGCTGGTCT----GAATGGA-GAGTTGA-----AAATCCCCGGTC 44 * * ** * ** * ****** *** ** ***** * ** consensus_1932#0 AATTTTTAATTTCTTCACATGCCTCACTCTTTGCCTCAAGCACTTTTTTAGATCTTTCTC 120 consensus_1932#1 GCTGTTT--TGTGCTCAGAAG----ATGGTGAGACCTGTGGGCTTGGTTGGCTCTCTCTC 98 * *** * * *** * * * * * * * *** ** * *** **** consensus_1932#0 TCTCTTTCTTCCCTGTGACACTCTTTTTCCTCGCTGGTTGCCCGACACCTGTTCTCATCT 180 consensus_1932#1 TCTCCTTTTCCATCATCTGAAAATTCTCTCTTTCT----------CTCCTGTGG--ACTT 146 **** ** * * * * ** * ** ** * ***** * * consensus_1932#0 GTTCAAACACACTCAGGAAAACCCTGACAAGTTCGTTTGTTATCAACACTCCATTCAGGT 240 consensus_1932#1 CCTCAAGTTTATCCATCTCCCTCCTGACAAGTTCGTTTGTTATCAACACTCCATTCAGGT 206 **** * ** ************************************** consensus_1932#0 AGCTCTTGCGCGCGTAGAAATTATGAATGTATTTTCTCACGTAGAATCCCCGCCATAACT 300 consensus_1932#1 AGTTCTTGCGTGTGTAGAAATTATGAATGTATTTTCTCACGTAGAATCCCCGCCATAACT 266 ** ******* * *********************************************** consensus_1932#0 TTTGGATCTTGACTGCCATCTCCTTGAAGAAATTCATCTTCGTAATAAAATATGCTGCCT 360 consensus_1932#1 TTTGGATCTTGACTGCCATCTCCTTGTAGAAATTCATCTTCGTAATAAAATATGCTGCCT 326 ************************** ********************************* consensus_1932#0 TCACCATTTGTATGAAATGTGCATTAGCTCTGAAGCTGCGCCATATCCTCTGGATAATGA 420 consensus_1932#1 TCACCATTTGTATGAAATGTGCATTAGCTCTGAAGCTGCGCCATATCCTCTGGATAATGA 386 ************************************************************ consensus_1932#0 CTGCCTTCTTGAGCAGATGGCTGAGGTAGGTGCGCACCTTACAGCCTCGGAACCAGCTCT 480 consensus_1932#1 CTGCCTTCTTGAGCAGATGGCTGAGGTAGGTGCGCACCTTACAGCCTCGGAACCAGCTCT 446 ************************************************************ consensus_1932#0 GAATCAGGACAGCAGCCTGATGTTCCTTCTTCCTGTTTTGCTCAGCTTGACTGTGTGCCT 540 consensus_1932#1 GAATCAGGACAGCAGCCTGATGTTCCTTCTTCCTGTTTTGCTCAGCTTGACT-TGTTTTT 505 **************************************************** *** * consensus_1932#0 GGG--CTTTTTCCTTTATGAAAACTTCAATTTCTCTTTGCAGACTTAACAGCTCCGCCAT 598 consensus_1932#1 GGTATCTCTTTCTATAGTTACTATAGAAAGAAATCT------------------------ 541 ** ** **** * * * * ** *** consensus_1932#0 GTCGTTTAGCGTCTTCCCGTCGTCTTGGTAACACAACGAAGAAGCGTTCCAGTGCTGCCC 658 consensus_1932#1 ------------------------------------------------------------ consensus_1932#0 ACACCTCAACAAGGACAGGGGCATAAATTTGGT 691 consensus_1932#1 --------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |