These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1938#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 646 fasta sequence [CGGAATGGATATCCCGACCTTCGAAGACAAAGGAAATGTTATAGGAAAAGAGGGTGTGGAGGAAGAGCTGGAGAAGAAGAAAGAAAGAGAAGATGAAAATGAGGATGGAGAAGTGAGAGAAGAAGAAAAAGTTGAATCACCCGGACAGAAGCAGGAAACAGGCTTTTCTCCGCGCATCGGTTTCTTCAATAGTCTGCAGAGAGAGGTGTACTACTATGCCGACGAGAAGATCGTCATAGAAGAGGGGCTTGACTCCTTCGCTGGGATGATATGGGCAGCTGCTCTCGCTCTCTGTCACCACCTGGACTCGCACCGTCAGCAGATCAATCTGGTGGACAAAGGCGGTCCTGGAGCTCGGGGCAGGAACGGGCCTCGGGTCTGTCGTTGCGGCGCTCCTGGGCGCCTGGGTGACGGCCACAGACCTCCCAGTGGTCCTGAACAACCTGACGGCCAATGTGTCAAGAAACACCAGGGGGCGCTGCAGACACACACCCCAGGTAGCAGCTCTGGTTTGGGGTCACGACCTGGAGACCACCTACCCCACATCCGTGTATCGCTACGACTACGTCCTGGCCGCTGACGTGGTCTACCACCACGACTTCCTGAACGAACTCCTGGACACCATGAAGGACTTCTGCAGACCAGG] [+] EMBL FR0063421 [CGGAATGGATATCCCGACCTTCGAAGACAAAGGAAATGTTATAGGAAAAGAGGGTGTGGAGGAAGAGCTGGAGAAGAAGAAAGAAAGAGAAGATGAAAATGAGGATGGAGAAGTGAGAGAAGAAGAAAAAGTTGAATCACCCGGACAGAAGCAGGAAACAGGCTTTTCTCCGCACATCGGTTTCTTCAATAGTCTGCAGAGAGAGGTGTACTACTATGCCGACGAGAAGATCGTCATAGAAGAGGGGCTTGACTCCTTCGCTGGGATGATATGGGCAGCTGCTCTCGCTCTCTGTCACCACCTGGACTCGCACCGTCAGCAGATCAATCTGGTGGACAAAGGCGGTCCTGGTGCTC GGGCAGGAACGGGCCTCGGGT TGTCGTT ] [+] EMBL BU805360 [ GCATCGGTTTCTTCAATAGTCTGCAGAGAGAGGTGTACTACTATGCCGACGAGAAGATCGTCATAGAAGAGGGGCTTGACTCCTTCGCTGGGATGATATGGCCAGCTGCTCTCGCTCTCTGTCACCACCTGGACTCGCACCGTCAGCAGATCAATCTGGTGGAC AAGGCGGTCCTGGAGCTCGGGGCAGGAACGGGCCTCGTGTCTGTCGTTGCGGCGCTCCTGGGCGCCTGGGTGACGGCCACAGACCTCCCAGTGGTCCTGAACAACCTGACGGCCAATGTGTCAAGAAACACCAGGGGGCGCTGCAGACACACACCCCAGGTAGCAGCTCTGGTTTGGGGTCACGACCTGGAGACCACCTACCCCACATCCGTGTATCGCTACGACTACGTCCTGGCCGCTGACGTGGTCTACCACCACGACTTCCTGAACGAACTCCTGGACACCATGAAGGACTTCTGCAGACCAGG] consensusID : consensus_1938#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 357 fasta sequence [TCTCTTCCTTTATTCCTGCTCTTCCGTCGCAGGCTGGAGATCTCAGGGACCCACGGCTAGGACGCCTGTACGGAAGCAGAAACCAGTAACACTTTTATTCATCCTGGCCCTCGCCCAGATGTCCACGTTGGCATCTACGTGCTCGCTTCTCCTGTATACTGCCTGTGTTTATTCCTCCTGGGCACAAAACTAAAAATAAGCCCATGTCCTTGTGATGAAGATGGGAGTGTCCAGCAGGATGCTGTGTCTGTATAACCTTGCAGCCGGAGATCGCCAGTGAGATCTTTCATGAGAGGATAAAGAGGCGGCAGCGGTCAAGAGTCGGAATGGATATCCCGACCTTCGAAGACAAAGGAA] [+] EMBL FR0063731 [TCTCTTCCTTTATTCCTGCTCTTCCGTCGCAGGCTGGAGATCTCAGGGACCCACGGCTAGGACGCCTGTACGGAAGCAGAAACCAGTAACACTTTTATTCATCCTGGCCCTCGCCCAGATGTCCACGTTGGCATCTACGTGCTCGCTTCTCCTGTATACTGCCTGTGTTTATTCCTCCTGGGCACAAAACTAAAAATAAGCCCATGTCCTTGTGATGAAGATGGGAGTGTCCAGCAGGATGCTGTGTCTGTATAACCTTGCAGCCGGAGATCGCCAGTGAGATCTTTCATGAGAGGATAAAGAGGCGGCAGCGGTCAAGAGTCGGAATGGATATCCCGACCTTCGAAGACAAAGGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1938#0 CGGAATGGATATCCCGACCTTCGAAGACAAAGGAAATGTTATAGGAAAAGAGGGTGTGGA 60 consensus_1938#1 ------------------------------------------------------------ consensus_1938#0 GGAAGAGCTGGAGAAGAAGAAAGAAAGAGAAGATGAAAATGAGGATGGAGAAGTGAGAGA 120 consensus_1938#1 ------------------------------------------------------------ consensus_1938#0 AGAAGAAAAAGTTGAATCACCCGGACAGAAGCAGGAAACAGGCTTTTCT-CCGCGCATCG 179 consensus_1938#1 ------------------------TCTCTTCCTTTATTCCTGCTCTTCCGTCGCAGGCTG 36 * * * * *** *** *** * consensus_1938#0 GTTTCTTCAATAGTCTGCAGAGAGAGG---TGTACTACTATGCCGACGAG-AAGATCGTC 235 consensus_1938#1 GAGATCTCAGGGACCCACGGCTAGGACGCCTGTACGGAAGCAGAAACCAGTAACACTTTT 96 * *** * * * ** ***** ** ** ** * * consensus_1938#0 ATAGAAGAGGGGCTTGACTCCTTCG-CTGGGATGATATGGGCAGCTGCTCTCGCTCTCTG 294 consensus_1938#1 ATTCATCCTGGCCCTCGCCCAGATGTCCACGTTGGCATCTACG--TGCTCGCTTCTCCTG 154 ** * ** * * * * * * * ** ** * ***** * *** consensus_1938#0 T-CACCACCTGGACTCGCACCGTCAGCAGATCAATCTGGTGGACAAAGGCG-GTCCTGGA 352 consensus_1938#1 TATACTGCCTGTGTTTATTCCTCCTGGGCACAAAACTAA-AAATAAGCCCATGTCCTTGT 213 * ** **** * ** * * * ** ** * ** * ***** * consensus_1938#0 GCTCGGGGCAGGAACGGGCCTCGGGTCTGTCGTTGCGGCGCTCCTGGGCGCCTGGGTGAC 412 consensus_1938#1 GATGAAGATGGGAGTGTCCAGCAGGA-TGCTGTGTCTGTATAACCTTGCAGCCGGAGATC 272 * * * *** * * * ** ** ** * * * ** * ** * consensus_1938#0 GGCCAC-AGACCTCCCAGTGGTCCTGAACAACCTGACGGCCAATGTGTCAAGAAACACCA 471 consensus_1938#1 GCCAGTGAGATCTTTCATGAGA---GGATAAAGAGGCGGC-AGCG-GTCAAGAGTCGGAA 327 * * *** ** ** * * * ** * **** * * ******* * * consensus_1938#0 GGGGGCGCTGCAGACACACACCCCAGGTAGCAGCTCTGGTTTGGGGTCACGACCTGGAGA 531 consensus_1938#1 TGGATATCCCGACCTTCGAAGACAAAGGAA------------------------------ 357 ** * * * * * * * * consensus_1938#0 CCACCTACCCCACATCCGTGTATCGCTACGACTACGTCCTGGCCGCTGACGTGGTCTACC 591 consensus_1938#1 ------------------------------------------------------------ consensus_1938#0 ACCACGACTTCCTGAACGAACTCCTGGACACCATGAAGGACTTCTGCAGACCAGG 646 consensus_1938#1 ------------------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |