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Takifugu rubripes
cluster # 1944 cluster # 1944       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1944#0 length = 360 sequences # 1  
 consensus_1944#1 length = 295 sequences # 2  
consensusID : consensus_1944#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 360
fasta sequence 
                              [GATGAGGGTGTGGCTCCTCTTGGTCCTGTGCCTGGCTGGTTCTGCCACGGCTGCTCCTGAGCCCGAGGTGGGGGCCAACCCAGTCCAGATCGAGGTGGGCGAGTTCGACGAGGCCATCGAGATTGTCGAAGACGACGTGGTGTAGAATGCCTGCCTGGACTATCACTGCAAGAAGGGAAAAGTGTGTGAGCTGGACGAGAGCAACACCCCCATGTGTGTGTGTCAGGACGCCACCAGCTGCCCCCCCTGCTGAGGGAGAGTTTGAGCATGTCTGCGGCACCGACAACAAGACCTACGACACCTCCTGCCATTTCTTCGCCACCAAGGGTGCCCTGGGGGGGACCAAGAAGGGTCACAAGC]

[+] EMBL FR0062312            [GATGAGGGTGTGGCTCCTCTTGGTCCTGTGCCTGGCTGGTTCTGCCACGGCTGCTCCTGAGCCCGAGGTGGGGGCCAACCCAGTCCAGATCGAGGTGGGCGAGTTCGACGAGGCCATCGAGATTGTCGAAGACGACGTGGTGTAGAATGCCTGCCTGGACTATCACTGCAAGAAGGGAAAAGTGTGTGAGCTGGACGAGAGCAACACCCCCATGTGTGTGTGTCAGGACGCCACCAGCTGCCCCCCCTGCTGAGGGAGAGTTTGAGCATGTCTGCGGCACCGACAACAAGACCTACGACACCTCCTGCCATTTCTTCGCCACCAAGGGTGCCCTGGGGGGGACCAAGAAGGGTCACAAGC]




>consensus_1944#0
GATGAGGGTGTGGCTCCTCTTGGTCCTGTGCCTGGCTGGTTCTGCCACGGCTGCTCCTGA
GCCCGAGGTGGGGGCCAACCCAGTCCAGATCGAGGTGGGCGAGTTCGACGAGGCCATCGA
GATTGTCGAAGACGACGTGGTGTAGAATGCCTGCCTGGACTATCACTGCAAGAAGGGAAA
AGTGTGTGAGCTGGACGAGAGCAACACCCCCATGTGTGTGTGTCAGGACGCCACCAGCTG
CCCCCCCTGCTGAGGGAGAGTTTGAGCATGTCTGCGGCACCGACAACAAGACCTACGACA
CCTCCTGCCATTTCTTCGCCACCAAGGGTGCCCTGGGGGGGACCAAGAAGGGTCACAAGC

consensusID : consensus_1944#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 295
fasta sequence 
                              [GGCTCCTCTTGGTCCTGTGCCTGGCTGGTTCTGCCACGGCTGCTCCTACTGAGGAAGAGGAGGTCTTTGTGGAGGAGATGCTAACTGAGGAGCCAGTTGTGGAGGAGCCCGAGGTGGGGGCCAACCCAGTCCAGATCGAGGTGGGCGAGTTCGACGAGGCCATCGAGATTGTCGAAGACGACGTGGTGGAGAATGCCTGCCTGGACTATCACTGCAAGAAGGGAAAAGTGTGTGAGCTGGACGAGAGCAACACCCCCACTGTGGGTGTGTCAGGACGCCACCAAGTTGCCCCCCT]

[+] EMBL FR0062294            [GGCTCCTCTTGGTCCTGTGCCTGGCTGGTTCTGCCACGGCTGCTCCTACTGAGGAAGAGGAGGTCTTTGTGGAGGAGCTGCTAACTGAGGAGCCAGTTGTGGAGGAGCCCGAGGTGGGGGCCAACCCAGTCCAGATCGAGGTGGGCGAGTTCGACGAGGCCATCGAGATTGTCGAAGACGACGTGGTGGAGAATGCCTGCCTGGACTATCACTGCAAGAAGGGAAAAGTGTGTGAGCTGGACGAGAGCAACACCCCCA TGTGGGTGTGTCAGGACGCC                ]
[+] EMBL FR0057733            [  CTCCTCTTGGTCCTGTGCCTGGCTGGTTCTGCCACGGCTGCTCCTACTGAGGAAGAGGAGGTCTTTGTGGAGGAGATGCTAACTGAGGAGCCAGTTGTGGAGGAGCCCGAGGTGGGGGCCAACCCAGTCCAGATCGAGGTGGGCGAGTTCGACGAGGCCATCGAGATTGTCGAAGACCACGTGGTGGAGAATGCCTGCCTGGACTATCACTGCAAGAAGGGAAAAGTGTGTGAGCTGGACGAGAGCAATACCCCCACTGTGTGTGTGTCAGGACGCCACCAAGTTGCCCCCCT]




>consensus_1944#1
GGCTCCTCTTGGTCCTGTGCCTGGCTGGTTCTGCCACGGCTGCTCCTACTGAGGAAGAGG
AGGTCTTTGTGGAGGAGATGCTAACTGAGGAGCCAGTTGTGGAGGAGCCCGAGGTGGGGG
CCAACCCAGTCCAGATCGAGGTGGGCGAGTTCGACGAGGCCATCGAGATTGTCGAAGACG
ACGTGGTGGAGAATGCCTGCCTGGACTATCACTGCAAGAAGGGAAAAGTGTGTGAGCTGG
ACGAGAGCAACACCCCCACTGTGGGTGTGTCAGGACGCCACCAAGTTGCCCCCCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1944#0      GATGAGGGTGTGGCTCCTCTTGGTCCTGTGCCTGGCTGGTTCTGCCACGGCTGCTCCT-- 58
consensus_1944#1      -----------GGCTCCTCTTGGTCCTGTGCCTGGCTGGTTCTGCCACGGCTGCTCCTAC 49
                                 ***********************************************  

consensus_1944#0      -------------------------------------------------------GAGCC 63
consensus_1944#1      TGAGGAAGAGGAGGTCTTTGTGGAGGAGATGCTAACTGAGGAGCCAGTTGTGGAGGAGCC 109
                                                                             *****

consensus_1944#0      CGAGGTGGGGGCCAACCCAGTCCAGATCGAGGTGGGCGAGTTCGACGAGGCCATCGAGAT 123
consensus_1944#1      CGAGGTGGGGGCCAACCCAGTCCAGATCGAGGTGGGCGAGTTCGACGAGGCCATCGAGAT 169
                      ************************************************************

consensus_1944#0      TGTCGAAGACGACGTGGTGTAGAATGCCTGCCTGGACTATCACTGCAAGAAGGGAAAAGT 183
consensus_1944#1      TGTCGAAGACGACGTGGTGGAGAATGCCTGCCTGGACTATCACTGCAAGAAGGGAAAAGT 229
                      ******************* ****************************************

consensus_1944#0      GTGTGAGCTGGACGAGAGCAACACCCCCA-TGTGTGTGTGTCAGGACGCCACCAGCTGCC 242
consensus_1944#1      GTGTGAGCTGGACGAGAGCAACACCCCCACTGTGGGTGTGTCAGGACGCCACCAAGTTGC 289
                      ***************************** **** *******************  *  *

consensus_1944#0      CCCCCTGCTGAGGGAGAGTTTGAGCATGTCTGCGGCACCGACAACAAGACCTACGACACC 302
consensus_1944#1      CCCCCT------------------------------------------------------ 295
                      ******                                                      

consensus_1944#0      TCCTGCCATTTCTTCGCCACCAAGGGTGCCCTGGGGGGGACCAAGAAGGGTCACAAGC 360
consensus_1944#1      ----------------------------------------------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)