These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1950#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 386 fasta sequence [CTGCCTGGTTGCCGTCGTGATCCCTGATCCGGAGGACCTGCCCAGTTTTGCCAAGAAGCTGGGAGTCCAAGGTTCCTTAAAAGAACTCTGCAAAAACACGGAAATTAAAAAAGCCATTCTTTCAGACATGACCAAACTCGGAAAGGAAGCAGGACTCAAGTCCTTCGAGCAGGTGAAGGATATTTACCTCCACCCAGAGCAGTTCACCATTGAAAACGGTCTGTTGACGCCAACTTTAAAGGCCAAGAGGGCCGAGCTGAAAACGCTGTTCCAGCCTCAGATCAACCAGCTGTATGCAAACATGTCATGAACAAATTAAACCCAAACCTCTGCAGAAAATTGAAAGAAGATCTCGAGGGGGGCCCCGGTACCAAGTTTTGGCCCCC] [+] EMBL FR0056977 [CTGCCTGGTTGCCGTCGTGATCCCTGATCCGGAGGACCTGCCCAGTTTTGCCAAGAAGCTGGGAGTCCAAGGTTCCTTAAAAGAACTCTGCAAAAACACGGAAATTAAAAAAGCCATTCTTTCAGACATGACCAAACTCGGAAAGGAAGCAGGACTCAAGTCCTTCGAGCAGGTGAAGGATATTTACCTCCACCCAGAGCAGTTCACCATTGAAAACGGTCTGTTGACGCCAACTTTAAAGGCCAAGAGGGCCGAGCTGAAAACGCTGTTCCAGCCTCAGATCAACCAGCTGTATGCAAACATGTCATGAACAAATTAAACCCAAACCTCTGCAGAAAATTGAAAGAAGATCTCGAGGGGGGCCCCGGTACCAAGTTTTGGCCCCC] consensusID : consensus_1950#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 294 fasta sequence [GCCAAGAAACTGGGAGTCCAAGGTTCCCCAAAAGAACTCTGCAAAAACACGGAAATTAAAAAAGCCATTCTTTCAGACATGACCAAACTCGGAAAGGAAGCAGGACTCAAGTCCTTCGAGCAGGTGAAGGATATTTACCTCCACCCAGAGCAGTTCACCATTGAAAACGGTCTGTTGACGCCAACTTTAAAGGCCAAGAGGGCCGAGCTGAAAACGCTGTTCCAGCCTCATATCAACCAGCTGTATGCAAACATGTCATGAACAAATTAAACCCAAACCTCTGCTCTGGTAAAA] [+] EMBL CA845022 [GCCAAGAAACTGGGAGTCCAAGGTTCCCCAAAAGAACTCTGCAAAAACACGGAAATTAAAAAAGCCATTCTTTCAGACATGACCAAACTCGGAAAGGAAGCAGGACTCAAGTCCTTCGAGCAGGTGAAGGATATTTACCTCCACCCAGAGCAGTTCACCATTGAAAACGGTCTGTTGACGCCAACTTTAAAGGCCAAGAGGGCCGAGCTGAAAACGCTGTTCCAGCCTCATATCAACCAGCTGTATGCAAACATGTCATGAACAAATTAAACCCAAACCTCTGCTCTGGTAAAA] consensusID : consensus_1950#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 161 fasta sequence [GACAGTCTACAGTCCTGCCTGGTTGCCGTCGTGATCCCTGATCCGGAGGACCTGCCCAGTTTTGCCAAGAAACTGGGAGTCCAAGGTTCCTTAAAAGAACTCTGCAAAAAAAAAAAAAAAAAAAAACCCCAGGGGGGGCCCGGGACCCAACTTTTGGCCCC] [+] EMBL FR0057445 [GACAGTCTACAGTCCTGCCTGGTTGCCGTCGTGATCCCTGATCCGGAGGACCTGCCCAGTTTTGCCAAGAAACTGGGAGTCCAAGGTTCCTTAAAAGAACTCTGCAAAAAAAAAAAAAAAAAAAAACCCCAGGGGGGGCCCGGGACCCAACTTTTGGCCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1950#0 CTGCCTGGTTGCCGTCGTGATCCCTGATCCGGAGGACCTGCCCAGTTTTGCCAAGAAGCT 60 consensus_1950#1 -------------------------------------------------GCCAAGAAACT 11 consensus_1950#2 ------------------------------------------------------------ consensus_1950#0 GGGAGTCCAAGGTTCCTTAAAAGAACTCTGCAAAAACACGGAAATTAAAAAAGCCATTCT 120 consensus_1950#1 GGGAGTCCAAGGTTCCCCAAAAGAACTCTGCAAAAACACGGAAATTAAAAAAGCCATTCT 71 consensus_1950#2 ----------------------------------------GACAGTCTACAGTCCTGCCT 20 ** * * * * ** ** consensus_1950#0 TTCAGACATGACCAAACTCGGAAAGGAAGCAGGACTCAAGTCCTTCGAGCAGGTGAAGGA 180 consensus_1950#1 TTCAGACATGACCAAACTCGGAAAGGAAGCAGGACTCAAGTCCTTCGAGCAGGTGAAGGA 131 consensus_1950#2 GGTTGCCGTCGTGATCCCTGATCCGGAGGACCTGCCCAGTTTTGCCAAGAAACTGGGAG- 79 * * * * * * *** * * ** * * ** * ** * consensus_1950#0 TATTTACCTCCACCCAGAGCAGTTCACCATTGAAAACGGTCTGTTGACGCCAACTTTAAA 240 consensus_1950#1 TATTTACCTCCACCCAGAGCAGTTCACCATTGAAAACGGTCTGTTGACGCCAACTTTAAA 191 consensus_1950#2 --TCCAAGGTTCCTTAAAAGAACTCTGCAAAAAAAAAAA------------AAAAAAAAA 125 * * * * * * ** ** **** ** *** consensus_1950#0 GGCCAAGAGGGCCGAGCTGAAAACGCTGTTCCAGCCTCAGATCAACCAGCTGTATGCAAA 300 consensus_1950#1 GGCCAAGAGGGCCGAGCTGAAAACGCTGTTCCAGCCTCATATCAACCAGCTGTATGCAAA 251 consensus_1950#2 ACCCCAGGGGG--GGCCCGGGACCCAACTTTTGGCCCC---------------------- 161 ** ** *** * * * * * ** *** * consensus_1950#0 CATGTCATGAACAAATTAAACCCAAACCTCTGCAGAAAATTGAAAGAAGATCTCGAGGGG 360 consensus_1950#1 CATGTCATGAACAAATTAAACCCAAACCTCTGCTCTGG--TAAAA--------------- 294 consensus_1950#2 ------------------------------------------------------------ consensus_1950#0 GGCCCCGGTACCAAGTTTTGGCCCCC 386 consensus_1950#1 -------------------------- consensus_1950#2 -------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |