These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1956#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 580 fasta sequence [AGCAGCGGCTCACTATTAGGAACGTCGTGCACGACCTATGGCACAAAACTAAGCAGGGTAGCGCATCCCCTGGCGACTTTTATTAACCCCTACGTTGTATGGAAAGTGCTCCTGGATGGACCTGGGCGAAAACAGCTGGTCCATGGTCAAGCGAGAAGTGTCCAGCAGCCCAGGGTCGCCGGCAGAGCGGACGTATCTGCCCGGTGACAGCAGGAGGGACGGACCCACCTCGGATGATCTTAGGACTCCTCCGAGCGACCTTGACGCGCTGGGGCACCGGCGCCCGGACGGCAGATCACTACACTCCTATGTTCACTTTGGACACCATAACAACACCCTGACCACTGTCGAGGACATCCCGCTGTTTACGGATTTAGACCAGGGCGGCAAACTGGTCCTCCCTGGCGGAGCGCACAAGACCGGCCTGCTTGTAGATCCCACCGACATGTACCAAACACTGGCCATCGCCGCCGCACAGAGCCAGACTGGATATGATTCTTCCTCTGGTGGTTACATGCACTCCAACCCCAACTCCCCCGTCTACGTCCCCAGCTCCAAAGTGGGTTCCATGATACCGAGT] [+] EMBL CA589555 [AGCAGCGGCTCACTATTAGGAACGTCGTGCACGACCTATGGCACAAAACTAAGCAGGGTAGCGCATCCCCTGTCGACTTTTATTAACCCCTACGTTGTATGGAAAGTGCTCCTGGATGGACCTGGGCGAAAACAGCTGGTCCATGGTCAAGCGAGAAGTGTCCAGCAGCCCAGGGTCGCCGGCAGAGCAGACGTATCTGCCCGGTGACAGCAGGAGGGACGGACCCACCTCGGATGATCTTAGGACTCCTCCGAGCGACCTTGACGCGCTGGGGCACCGGCGCCCGGACGGCAGATCACTACACTCCTATGTTCACTTTGGACACCATAACAACACCCTGACCACTGTCGAGGACATCCCGCTGTTTACGGATTTAGACCAGGGCGGCAAACTGGTCCTCCCTGGCGGAGCGCACAAGACCGGCCTGCTTGTAGATCCCACCGACATGTACCAAACACTGGCCATCGCCGCCGCACAGAGCCAGACTGGATATGATTCTTCCTCTGGTGGTTACATGCACTCCAACCCCAACTCCCCCGTCTACGTCCCCAGCTCCAAAGTGGGTTCCATGATACCGAGT] [+] EMBL FR0059487 [ GCGACTTTTATTAACCCCTACGTTGTATGGAAAGTGCTCCTGGATGGACCTGGGCGAAAACAGCTGGTCCATGGTCAAGCGAGAAGTGTCCAGCAGCCCAGGGTCGCCGGCAGAGCGGACGTATCTGCCCGGTGACAGCAGGAGGGACGGACCCACCTCGGATGATCTTAGGACTCCTCCGAGCGACCTTGACGCGCTGGGGCACCGGCGCCCGGACGGCAGATCACTACACTCCTATGTTCACTTTGGACACCATAACAACACCCTGACCACTGTCGAGGACATCCCGCTGTTTACGGATTTA ] consensusID : consensus_1956#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 422 fasta sequence [GCCTCTTAAAAGCGCCCGATGGGAGTATGGCAGGGGCGTGGCTGGATGCGGTTTGTTGCACACGGAGACGACAGAATCCATTTTTTATTTTTGTTGAGAGTTAAATCAGGTTACTAGATTGGGGGAAGCCTTGCGCGATGGGTGTTAAGATGAATACGCGTCTCGGCAGAGGTGGATTTCCAGAAAGTCAGCCGCTCTGTCCAGATGTTCGCGGGGCGGGATTACATTCCTAACTTGGCATCACATGCGTAAAATCCCATTTTCTCCCTCCTGTTTTTCTTCGAGACAGGGGAGCGCATTCCCTGTCGACTTTTATTAACCCCTACGTTGAATGGAAAGTGCTCCTGGATGGACCTGGGCGAAAACAGCTGGTCCATGGTCAAGCGAGAAAGGGTCCAGCAGCCCCAGGGGCGCCGGGCAGA] [+] EMBL FR0059933 [GCCTCTTAAAAGCGCCCGATGGGAGTATGGCAGGGGCGTGGCTGGATGCGGTTTGTTGCACACGGAGACGACAGAATCCATTTTTTATTTTTGTTGAGAGTTAAATCAGGTTACTAGATTTTGGGAAGCCTTGCGCGATGGGTGTTAAGATGAATACGCGTCTCGGCAGAGGTGGATTTCCAGAAAGTCAGCCGCTCTGTCCAGATGTTCGCGGGCCGGGTTTACATTCCTAACTTGGCATCACA ] [+] EMBL FR0062158 [ TAGATTGGGGGAAGCCTTGCGCGATGGTTGTTAAGATGAATACGCGTCTCGGCAGAGGTGGATTTCCAGAAAGTCAGCCGCTCTGTCCAGATGTTCGCGGGGCGGGATTACATTCCTAACTTGGCATCACATGCGTAAAATCCCATTTTCTCCCTCCTGTTTTTCTTCGAGACAGGGGAGCGCATTCCCTGTCGACTTTTATTAACCCCTACGTTGAATGGAAAGTGCTCCTGGATGGACCTGGGCGAAAACAGCTGGTCCATGGTCAAGCGAGAAAGGGTCCAGCAGCCCCAGGGGCGCCGGGCAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1956#0 AGCAGCGGCTCACTATTAGGAACGTCGTGCACGACCTATGGCACAAAACTAAGCAGGGTA 60 consensus_1956#1 -------------------GCCTCTTAAAAGCGCCCGATGG----GAGTATGGCAGGG-- 35 * * ** ** **** * ****** consensus_1956#0 GCGCATCCCCTGGCGACTTTTATTAACCCCTACGTTGTATGGAAAGTGCTCCTGGATGGA 120 consensus_1956#1 --GCGTGGCTGGATGCGGTTTGTTGCACACGGAGACG-ACAGAATCCATTTTTTATTTTT 92 ** * * * * *** ** * * * * * *** * * * consensus_1956#0 CCTGGGCGAAAACAGCTGGTCCATGGTCAAGCGAGAAGTGTCCAGCAGCCCAGGGTCGCC 180 consensus_1956#1 GTTGAGAGTTAA-ATCAGGTTACTAGATTGG-GGGAAGCCTTGCGCGAT---GGGTGTTA 147 ** * * ** * * *** * * * * **** * ** **** consensus_1956#0 GGCAGAGCGGACGTATCTGCCCGGTGACAGCAGGAGGGACGGACCCACCTCGGATGATCT 240 consensus_1956#1 AGATGAATACGCGTCTCGGC--------------AGAGGTGGATTT---CCAGAAAGTCA 190 * ** *** ** ** ** * *** * ** ** consensus_1956#0 TAGGACTCCTCCGAGCGACCTTGACGCGCTGGGGCACCGGCGCCCGGACGGCAGATCACT 300 consensus_1956#1 GCCGCTCTGTCCAGATGTTCGCGGGGCGGGATTACATTCCTAACTTGGCATCACATGCGT 250 * *** * * * *** ** * * * ** ** * consensus_1956#0 ACACTCCTATGTTCACTTTGGACACCATAACAACACCCTGACCACTGTCGAGGACATCCC 360 consensus_1956#1 AAAATCCCATTTTCTCCCT------CCTGTT--TTTCTTCGAGACAGGGGAGCGCATTCC 302 * * *** ** *** * * * * * * ** * *** *** ** consensus_1956#0 GCTGTTTACGGATTTAGACCAGGGCGGCAAACTG---GTCCTCCCTGGCGGAGC-GCACA 416 consensus_1956#1 -CTGTCGACTTTTATTAACCCCTACGTTGAATGGAAAGTGCTCCTGGATGGACCTGGGCG 361 **** ** * * *** ** ** * ** **** * *** * * * consensus_1956#0 AGACCGGCCTGCTTGTAGATCCCACCGACATGTACCAAACACTGGCCATCGCCGCCGCAC 476 consensus_1956#1 AAAACAGCTGGTCCAT-GGTCAAGCGAGAAAGGGTCCAGCAGCC-CCAGGGGCGCCGGGC 419 * * * ** * * * ** * * * * * ** *** * ***** * consensus_1956#0 AGAGCCAGACTGGATATGATTCTTCCTCTGGTGGTTACATGCACTCCAACCCCAACTCCC 536 consensus_1956#1 AGA--------------------------------------------------------- 422 *** consensus_1956#0 CCGTCTACGTCCCCAGCTCCAAAGTGGGTTCCATGATACCGAGT 580 consensus_1956#1 -------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |