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Takifugu rubripes
cluster # 1956 cluster # 1956       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1956#0 length = 580 sequences # 2  
consensus_1956#1 length = 422 sequences # 2  

consensusID : consensus_1956#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 580
fasta sequence
                              [AGCAGCGGCTCACTATTAGGAACGTCGTGCACGACCTATGGCACAAAACTAAGCAGGGTAGCGCATCCCCTGGCGACTTTTATTAACCCCTACGTTGTATGGAAAGTGCTCCTGGATGGACCTGGGCGAAAACAGCTGGTCCATGGTCAAGCGAGAAGTGTCCAGCAGCCCAGGGTCGCCGGCAGAGCGGACGTATCTGCCCGGTGACAGCAGGAGGGACGGACCCACCTCGGATGATCTTAGGACTCCTCCGAGCGACCTTGACGCGCTGGGGCACCGGCGCCCGGACGGCAGATCACTACACTCCTATGTTCACTTTGGACACCATAACAACACCCTGACCACTGTCGAGGACATCCCGCTGTTTACGGATTTAGACCAGGGCGGCAAACTGGTCCTCCCTGGCGGAGCGCACAAGACCGGCCTGCTTGTAGATCCCACCGACATGTACCAAACACTGGCCATCGCCGCCGCACAGAGCCAGACTGGATATGATTCTTCCTCTGGTGGTTACATGCACTCCAACCCCAACTCCCCCGTCTACGTCCCCAGCTCCAAAGTGGGTTCCATGATACCGAGT]

[+] EMBL CA589555             [AGCAGCGGCTCACTATTAGGAACGTCGTGCACGACCTATGGCACAAAACTAAGCAGGGTAGCGCATCCCCTGTCGACTTTTATTAACCCCTACGTTGTATGGAAAGTGCTCCTGGATGGACCTGGGCGAAAACAGCTGGTCCATGGTCAAGCGAGAAGTGTCCAGCAGCCCAGGGTCGCCGGCAGAGCAGACGTATCTGCCCGGTGACAGCAGGAGGGACGGACCCACCTCGGATGATCTTAGGACTCCTCCGAGCGACCTTGACGCGCTGGGGCACCGGCGCCCGGACGGCAGATCACTACACTCCTATGTTCACTTTGGACACCATAACAACACCCTGACCACTGTCGAGGACATCCCGCTGTTTACGGATTTAGACCAGGGCGGCAAACTGGTCCTCCCTGGCGGAGCGCACAAGACCGGCCTGCTTGTAGATCCCACCGACATGTACCAAACACTGGCCATCGCCGCCGCACAGAGCCAGACTGGATATGATTCTTCCTCTGGTGGTTACATGCACTCCAACCCCAACTCCCCCGTCTACGTCCCCAGCTCCAAAGTGGGTTCCATGATACCGAGT]
[+] EMBL FR0059487            [                                                                        GCGACTTTTATTAACCCCTACGTTGTATGGAAAGTGCTCCTGGATGGACCTGGGCGAAAACAGCTGGTCCATGGTCAAGCGAGAAGTGTCCAGCAGCCCAGGGTCGCCGGCAGAGCGGACGTATCTGCCCGGTGACAGCAGGAGGGACGGACCCACCTCGGATGATCTTAGGACTCCTCCGAGCGACCTTGACGCGCTGGGGCACCGGCGCCCGGACGGCAGATCACTACACTCCTATGTTCACTTTGGACACCATAACAACACCCTGACCACTGTCGAGGACATCCCGCTGTTTACGGATTTA                                                                                                                                                                                                            ]


>consensus_1956#0 AGCAGCGGCTCACTATTAGGAACGTCGTGCACGACCTATGGCACAAAACTAAGCAGGGTA GCGCATCCCCTGGCGACTTTTATTAACCCCTACGTTGTATGGAAAGTGCTCCTGGATGGA CCTGGGCGAAAACAGCTGGTCCATGGTCAAGCGAGAAGTGTCCAGCAGCCCAGGGTCGCC GGCAGAGCGGACGTATCTGCCCGGTGACAGCAGGAGGGACGGACCCACCTCGGATGATCT TAGGACTCCTCCGAGCGACCTTGACGCGCTGGGGCACCGGCGCCCGGACGGCAGATCACT ACACTCCTATGTTCACTTTGGACACCATAACAACACCCTGACCACTGTCGAGGACATCCC GCTGTTTACGGATTTAGACCAGGGCGGCAAACTGGTCCTCCCTGGCGGAGCGCACAAGAC CGGCCTGCTTGTAGATCCCACCGACATGTACCAAACACTGGCCATCGCCGCCGCACAGAG CCAGACTGGATATGATTCTTCCTCTGGTGGTTACATGCACTCCAACCCCAACTCCCCCGT CTACGTCCCCAGCTCCAAAGTGGGTTCCATGATACCGAGT



consensusID : consensus_1956#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 422
fasta sequence
                              [GCCTCTTAAAAGCGCCCGATGGGAGTATGGCAGGGGCGTGGCTGGATGCGGTTTGTTGCACACGGAGACGACAGAATCCATTTTTTATTTTTGTTGAGAGTTAAATCAGGTTACTAGATTGGGGGAAGCCTTGCGCGATGGGTGTTAAGATGAATACGCGTCTCGGCAGAGGTGGATTTCCAGAAAGTCAGCCGCTCTGTCCAGATGTTCGCGGGGCGGGATTACATTCCTAACTTGGCATCACATGCGTAAAATCCCATTTTCTCCCTCCTGTTTTTCTTCGAGACAGGGGAGCGCATTCCCTGTCGACTTTTATTAACCCCTACGTTGAATGGAAAGTGCTCCTGGATGGACCTGGGCGAAAACAGCTGGTCCATGGTCAAGCGAGAAAGGGTCCAGCAGCCCCAGGGGCGCCGGGCAGA]

[+] EMBL FR0059933            [GCCTCTTAAAAGCGCCCGATGGGAGTATGGCAGGGGCGTGGCTGGATGCGGTTTGTTGCACACGGAGACGACAGAATCCATTTTTTATTTTTGTTGAGAGTTAAATCAGGTTACTAGATTTTGGGAAGCCTTGCGCGATGGGTGTTAAGATGAATACGCGTCTCGGCAGAGGTGGATTTCCAGAAAGTCAGCCGCTCTGTCCAGATGTTCGCGGGCCGGGTTTACATTCCTAACTTGGCATCACA                                                                                                                                                                                 ]
[+] EMBL FR0062158            [                                                                                                                  TAGATTGGGGGAAGCCTTGCGCGATGGTTGTTAAGATGAATACGCGTCTCGGCAGAGGTGGATTTCCAGAAAGTCAGCCGCTCTGTCCAGATGTTCGCGGGGCGGGATTACATTCCTAACTTGGCATCACATGCGTAAAATCCCATTTTCTCCCTCCTGTTTTTCTTCGAGACAGGGGAGCGCATTCCCTGTCGACTTTTATTAACCCCTACGTTGAATGGAAAGTGCTCCTGGATGGACCTGGGCGAAAACAGCTGGTCCATGGTCAAGCGAGAAAGGGTCCAGCAGCCCCAGGGGCGCCGGGCAGA]


>consensus_1956#1 GCCTCTTAAAAGCGCCCGATGGGAGTATGGCAGGGGCGTGGCTGGATGCGGTTTGTTGCA CACGGAGACGACAGAATCCATTTTTTATTTTTGTTGAGAGTTAAATCAGGTTACTAGATT GGGGGAAGCCTTGCGCGATGGGTGTTAAGATGAATACGCGTCTCGGCAGAGGTGGATTTC CAGAAAGTCAGCCGCTCTGTCCAGATGTTCGCGGGGCGGGATTACATTCCTAACTTGGCA TCACATGCGTAAAATCCCATTTTCTCCCTCCTGTTTTTCTTCGAGACAGGGGAGCGCATT CCCTGTCGACTTTTATTAACCCCTACGTTGAATGGAAAGTGCTCCTGGATGGACCTGGGC GAAAACAGCTGGTCCATGGTCAAGCGAGAAAGGGTCCAGCAGCCCCAGGGGCGCCGGGCA GA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1956#0      AGCAGCGGCTCACTATTAGGAACGTCGTGCACGACCTATGGCACAAAACTAAGCAGGGTA 60
consensus_1956#1      -------------------GCCTCTTAAAAGCGCCCGATGG----GAGTATGGCAGGG-- 35
                                         *    *      ** ** ****     *     ******  

consensus_1956#0      GCGCATCCCCTGGCGACTTTTATTAACCCCTACGTTGTATGGAAAGTGCTCCTGGATGGA 120
consensus_1956#1      --GCGTGGCTGGATGCGGTTTGTTGCACACGGAGACG-ACAGAATCCATTTTTTATTTTT 92
                        ** *  *  *  *   *** **   * *   *  * *  ***     *  *   *   

consensus_1956#0      CCTGGGCGAAAACAGCTGGTCCATGGTCAAGCGAGAAGTGTCCAGCAGCCCAGGGTCGCC 180
consensus_1956#1      GTTGAGAGTTAA-ATCAGGTTACTAGATTGG-GGGAAGCCTTGCGCGAT---GGGTGTTA 147
                        ** * *  ** * * ***   * *    * * ****  *   **      ****    

consensus_1956#0      GGCAGAGCGGACGTATCTGCCCGGTGACAGCAGGAGGGACGGACCCACCTCGGATGATCT 240
consensus_1956#1      AGATGAATACGCGTCTCGGC--------------AGAGGTGGATTT---CCAGAAAGTCA 190
                       *  **     *** ** **              ** *  ***       * **   ** 

consensus_1956#0      TAGGACTCCTCCGAGCGACCTTGACGCGCTGGGGCACCGGCGCCCGGACGGCAGATCACT 300
consensus_1956#1      GCCGCTCTGTCCAGATGTTCGCGGGGCGGGATTACATTCCTAACTTGGCATCACATGCGT 250
                         *     ***    *  *  *  ***      **       *  * *  ** **   *

consensus_1956#0      ACACTCCTATGTTCACTTTGGACACCATAACAACACCCTGACCACTGTCGAGGACATCCC 360
consensus_1956#1      AAAATCCCATTTTCTCCCT------CCTGTT--TTTCTTCGAGACAGGGGAGCGCATTCC 302
                      * * *** ** *** *  *      * *        * *    ** *  ***  *** **

consensus_1956#0      GCTGTTTACGGATTTAGACCAGGGCGGCAAACTG---GTCCTCCCTGGCGGAGC-GCACA 416
consensus_1956#1      -CTGTCGACTTTTATTAACCCCTACGTTGAATGGAAAGTGCTCCTGGATGGACCTGGGCG 361
                       ****  **   * *  ***    **   **  *   ** ****  *  *** * *  * 

consensus_1956#0      AGACCGGCCTGCTTGTAGATCCCACCGACATGTACCAAACACTGGCCATCGCCGCCGCAC 476
consensus_1956#1      AAAACAGCTGGTCCAT-GGTCAAGCGAGAAAGGGTCCAGCAGCC-CCAGGGGCGCCGGGC 419
                      * * * **  *    * * **   *    * *   * * **    ***  * *****  *

consensus_1956#0      AGAGCCAGACTGGATATGATTCTTCCTCTGGTGGTTACATGCACTCCAACCCCAACTCCC 536
consensus_1956#1      AGA--------------------------------------------------------- 422
                      ***                                                         

consensus_1956#0      CCGTCTACGTCCCCAGCTCCAAAGTGGGTTCCATGATACCGAGT 580
consensus_1956#1      --------------------------------------------
                                                                  




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)