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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1962#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 583 fasta sequence
[CCTCTTGGCTGAGGTATGTAGTGTTTGAGCGTTTTATCAGTAGACAGAAGAATATAAAAAAAAGCCACCGTCCGCTTCGCAGAAGGAGTTCGGTTGACGCTCTGAGCCTGTGATATCATGGCGTTGGGAAAGAACCTGATGTTCGTGGCGATTCTTCTGTTCTTGAACTTTGGGACGGCCGCTGCCATCACCGATCCACAGATCTGCTACATCCTGGATGGAATGCTGTTCCTGTACGGCATCATCCTATCTGCTCTCTACTGCCGGATTAAGATTCTCAATGCAAAGGTGGCCAAAGCTGAAAAACTGAAAGCGAAGGCTGACGAGAGAATTTATATGGGTTTAGCTCCTCATGAGCAGAGCACATACGAGACCATCGGCCAGAAGAAGTGACCCCATCCATGCAAATGATTCATATCCATGCATTAAAATGTTTTGTGTATTCTGCTGAAACATTTTGAAGATGTGCTACTCCAAGTGTTAGCTTTGTGAATTTCAGATTTCCCATTAAGAGTAAGAAAAACTGGCGGGAAATATTCGTGTGCTGATGAATTTTTGTACCTGTCCTGTTCTTTCCCCGCCA]
[+] EMBL CA330711 [CCTCTTGGCTGAGGTATGTAGTGTTTGAGCGTTTTATCAGTAGACAGAAGAATATAAAAAAAAGCCACCGTCCGCTTCGCAGAAGGAGTTCGGTTGACGCTCTGAGCCTGTGATATCATGGCGTTGGGAAAGAACCTGATGTTCGTGGCGATTCTTCTGTTCTTGAACTTTGGGACGGCCGCTGCCATCACCGATCCACAGATCTGTTACATCCTGGATGGAATTCTGTTCCTGTACGGCATCATCCTCTCTGCTCTCTACTGCCGGATTAAGATTCTCAATGCAAAGGTGGCCAAAGCTGAAAAACTGAAAGCGAAGGCTGACGAGAGAATTTATATGGGTTTAGCTCCTCATGAGCAGAGCACATACGAGACCATCGGCCAGAAGAAGTGACCCCATCCATGCAAATGATTCATATCCATGCATTAAAATGTTTTGTGTATTCTGCTGAAACATTTTGAAGATGTGCTACTCCAAGTGTTAGCTTTGTGAATTTCAGATTTCCCATTAAGAGTAAGAAAAACTGGCGGGAAATATTCGTGTGCTGATGAATTTTTGTACCTGTCCTGTTCTTTCCCCGCCA]
[+] EMBL FR0062164 [ TTGTGGCGATTCTTCTGTTCTTGAACTTTGGGACGGCCGCTGCCATCACCGATCCACAGATTTGCTACATTCTGGATGTCATGCTGTTCCTGTACGGCATCATCCTAT ]
consensusID : consensus_1962#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 115 fasta sequence
[AATTTTTGTACCTGTCCTGGTCTTTCCCCGCCACGTTCAGTTGTTTTGGAAAATACACTTGTCCCCTATGCCTAAAAAAAAAAAAAAAAAAAACCCGAGGGGGGCCCCGTAACCA]
[+] EMBL CA330631 [AATTTTTGTACCTGTCCTGTTTTTTCCCCGCCACGTTCAGTTGTTTTGGAAAATACACTTGTCCCCTATGCCT ]
[+] EMBL FR0055900 [ TACCTGTCCTGGTCTTTCCCCGCCACGTTCAGTTGTTTTGGAAAATACACTTGTCCCCTATGCCTAAAAAAAAAAAAAAAAAAAACCCGAGGGGGGCCCCGTAACCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1962#0 CCTCTTGGCTGAGGTATGTAGTGTTTGAGCGTTTTATCAGTAGACAGAAGAATATAAAAA 60
consensus_1962#1 ------------------------------------------------------------
consensus_1962#0 AAAGCCACCGTCCGCTTCGCAGAAGGAGTTCGGTTGACGCTCTGAGCCTGTGATATCATG 120
consensus_1962#1 ------------------------------------------------------------
consensus_1962#0 GCGTTGGGAAAGAACCTGATGTTCGTGGCGATTCTTCTGTTCTTGAACTTTGGGACGGCC 180
consensus_1962#1 ------------------------------------------------------------
consensus_1962#0 GCTGCCATCACCGATCCACAGATCTGCTACATCCTGGATGGAATGCTGTTCCTGTACGGC 240
consensus_1962#1 ----------------------------------------AATTTTTGTACCTGTCCTGG 20
* * *** ***** * *
consensus_1962#0 ATCATCCTATCTGCTCTCTACTGCCGGATTAAGATTCTCAATGCAAAGGTGGCCAAAGCT 300
consensus_1962#1 TCTTTCCCCGCCACGTTCAGTTGTT---TTGGAA-----AATACACTTGTCCCCTATGCC 72
*** * * ** ** ** * *** ** ** ** * **
consensus_1962#0 GAAAAACTGAAAGCGAAGGCTGACGAGAGAATTTATATGGGTTTAGCTCCTCATGAGCAG 360
consensus_1962#1 TAAAAAAAAAAAAAAAAAAAACCCGAGGGGGGCCCCGTAACCA----------------- 115
***** *** ** **** * *
consensus_1962#0 AGCACATACGAGACCATCGGCCAGAAGAAGTGACCCCATCCATGCAAATGATTCATATCC 420
consensus_1962#1 ------------------------------------------------------------
consensus_1962#0 ATGCATTAAAATGTTTTGTGTATTCTGCTGAAACATTTTGAAGATGTGCTACTCCAAGTG 480
consensus_1962#1 ------------------------------------------------------------
consensus_1962#0 TTAGCTTTGTGAATTTCAGATTTCCCATTAAGAGTAAGAAAAACTGGCGGGAAATATTCG 540
consensus_1962#1 ------------------------------------------------------------
consensus_1962#0 TGTGCTGATGAATTTTTGTACCTGTCCTGTTCTTTCCCCGCCA 583
consensus_1962#1 -------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |