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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1964#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 716 fasta sequence
[CCTGAATCTGGGACACAACCGGCAGCTTTGGCCAATCTTGCCTTTAAAGCGACCATCGGACTCTCCCGCGACGCTCGGCTGTGATGGCGGCTTGACCCTGCAGGTGGATCGAGTCCTTTCCGGGAAGGATCTCACCTGTGTGAGTACTCGCCACCACCACAGGTCTCCCCAGGCTGACGCCCCGAACCATGAATGCCCACGGGCAGTCGCAGCGGCCGGCCAATGGAGTGGCCAGATCGGACAGCAAGATCAGCGCCAAGGCCCTCTACGAACAGAGGAAAAAGTACTCCAACTCTAATTTTATCATGCAAGAAACATCACAGTATCATGTGGAGCATCTCTCTTCCTTCATTATGGACAAGGCAGAATCCATCGTCACCGTGGACGACGCCATCAAGAAACTCGCCCTTCTGGACTCAAAGGACAAAATTTGGGCCCAAGAGGTGCTGCTGCAGGTCACAGACAAGGCGGTCAGGCTGCTGGACTGCGACACGCAGGAGGAGCTGGAGAACTTCCCCCTCTCCACCATCCACATGAGCCAGACAGTCCCCAATCAGACGCGCTACGCCTCCGTGCTGCTGCTGGTGTGTCAGGACAAAGACCAGCACCAGCCTGACATTCACTTCTTCCACTGCGACGAGGTCGACGCCGAGATAGTCCACGCGGATTTAGACAGCGCCCTTGGAGACAACAAGCACGGGAAGAAGATGAGACCC]
[+] EMBL CA588206 [CCTGAATCTGGGACACAACCGGCAGCTTTGGCCAATCTTGCCTTTAAAGCGACCATCGGACTCTCCCGCGACGCTCGGCTGTGATGGCGGCTTGACCCTGCAGGTGGATCGAGTCCTTTCCGGGAAGGATCTCACCTGTGTGAGTACTCGCCACCACCACAGGTCTCCCCAGGCTGACGCCCCGAACCATGAATGCCCACGGGCAGTCGCAGCGGCCGGCCAATGGAGTGGCCAGATCGGACAGCAAGATCAGCGCCAAGGCCCTCTACGAACAGAGGAAAAAGTACTCCAACTCTAATTTTATCATGCAAGAAACATCACAGTATCATGTGGAGCATCTCTCTTCCTTCATTATGGACAAGGCAGAATCCATCGTCACCGTGGACGACGCCATCAAGAAACTCGCCCTTCTGGACTCAAAGGACAAAATTTGGGCCCAAGAGGTGCTGCTGCAGGTCACAGACAAGGCGGTCAGGCTGCTGGACTGCGACACGCAGGAGGAGCTGGAGAACTTCCCCCTCTCCACCATCCACATGAGCCAGACAGTCCCCAATCAGACGCGCTACGCCTCCGTGCTGCTGCTGGTGTGTCAGGACAAAGACCAGCACCAGCCTGACATTCACTTCTTCCACTGCGACGAGGTCGACGCCGAGATAGTCCACGCGGATTTAGACAGCGCCCTTGGAGACAACAAGCACGGGAAGAAGATGAGACCC]
consensusID : consensus_1964#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 607 fasta sequence
[GCCGTTTCTGGGACACAAACCGGCAGCTTTGGCCAATCTTGGGTTTCAGGCGACCATCGGACTCTCCCGCGACGCTCGGCTGTGATGGCGGCTTGACCCTGCAGGTGGATCGAGTCCAGTCCGGGAAGGATCTCACCTGTGTCTCCCCAGGCTGACGCCCCGAACCATGAATGCCCACGGGCAGTCGCAGCGGCCGGCCAATGGAGTGGCCAGATCGGACAGCAAGATCAGCGCCAAGGCCCTCTACGAACAGAGGAAAAAGTACTCCAACTCTAATTTTATCATGCAAGAAACATCACAGTATCATGTGGAGCATCTCTCCACCTTCATTATGGACAAGGCAGAATCCATCGTCACCGTGGACGACGCCATCAAGAAAACTCGCCCTTCAGGACTCAAAGGACAAAAATTTGGGCCCAAGAGGTGCTGCTGCAGGTCACAGACAAGGCGGTCAGGCTGCTGGACTGCGACACGCAGGAGGAGCTGGAGAACTTCCCCCTCTCCACCATCCACATGAGCCAGACAGTCCCCAATCAGACGCGCTACGCCTCCGTGCTGCTGCTGGTGTGTCAGGACAAAGACCAGCACAAGCCTGACATTCACTTCT]
[+] EMBL CA591013 [GCCGTTTCTGGGACACAAACCGGCAGCTTTGGCCAATCTTGGGTTTCAGGCGACCATCGGACTCTCCCGCGACGCTCGGCTGTGATGGCGGCTTGACCCTGCAGGTGGATCGAGTCCAGTCCGGGAAGGATCTCACCTGTGTCTCCCCAGGCTGACGCCCCGAACCATGAATGCCCACGGGCAGTCGCAGCGGCCGGCCAATGGAGTGGCCAGATCGGACAGCAAGATCAGCGCCAAGGCCCTCTACGAACAGAGGAAAAAGTACTCCAACTCTAATTTTATCATGCAAGAAACATCACAGTATCATGTGGAGCATCTCTCCACCTTCATTATGGACAAGGCAGAATCCATCGTCACCGTGGACGACGCCATCAAG AAACTCGCCCTTCAGGACTCAAAGGAC AAAATTTGGGCCCAAGAGGTGCTGCTGCAGGTCACAGACAAGGCGGTCAGGCTGCTGGACTGCGACACGCAGGAGGAGCTGGAGAACTTCCCCCTCTCCACCATCCACATGAGCCAGACAGTCCCCAATCAGACGCGCTACGCCTCCGTGCTGCTGCTGGTGTGTCAGGACAAAGACCAGCACAAGCCTGACATTCACTTCT]
[+] EMBL FR0059966 [ CAATCTTGGGTTTCAGGCGACCATCGGACTCTCCCGCGACGCTCGGCTGTGAT GCGGCTTGACCCTGCAGGGGGATCGAGTCCACTCCGTGAAGGATCTCACCTGTGTCTCCCCAGGCTGACGCCCCGAACCATGAATGCCCACGGGCAGTCGCAGCGGCCGGCCAATGGAGT GCCAGATCGGACAGCAAGATCAGCGCCAAGGCCCTCTACGAACAGAGGAAAAAGTACTCCAACTCTAATTTTATCATGCAAGAAACATCACAGTATCATGTGGAGCATCTCTCCACCTTCATTATGGACAAGGCAGAATCCATCGTCACCGTGGACGACGCCATCAAGAAAACTTCCCCTTCTGGACTCAAAGAACAAAAATTTGGGCCCAAGAGGTGCTGCTGC ]
[+] EMBL FR0059918 [ GCGACGCTCGGCTGTGATGGCGGCTTGACCCTGCAGGTGGATCGAGTCCAGTCCGGGAAGGATCTCACCTGTGTCTCCCCAGGCTGACGCCCCGAACCATGAATGCCCACGGTCAGTCGCAGCGGCCGGCCAATGGAGTGGCCAGATCGGACAGCAAGATCAGCGCCAAGGCCCTCTACGAACAGAGGAAAAAGTACTCCAACTCTAATTTTATCATGCAAGAGACATCACAGTATCATGTG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1964#0 CCTGAATCTGGGACACAA-CCGGCAGCTTTGGCCAATCTTGCCTTTAAAGCGACCATCGG 59
consensus_1964#1 GCCGTTTCTGGGACACAAACCGGCAGCTTTGGCCAATCTTGGGTTTCAGGCGACCATCGG 60
* * ************ ********************** *** * ***********
consensus_1964#0 ACTCTCCCGCGACGCTCGGCTGTGATGGCGGCTTGACCCTGCAGGTGGATCGAGTCCTTT 119
consensus_1964#1 ACTCTCCCGCGACGCTCGGCTGTGATGGCGGCTTGACCCTGCAGGTGGATCGAGTCCAGT 120
********************************************************* *
consensus_1964#0 CCGGGAAGGATCTCACCTGTGTGAGTACTCGCCACCACCACAGGTCTCCCCAGGCTGACG 179
consensus_1964#1 CCGGGAAGGATCTCACCTGTGT-----------------------CTCCCCAGGCTGACG 157
********************** ***************
consensus_1964#0 CCCCGAACCATGAATGCCCACGGGCAGTCGCAGCGGCCGGCCAATGGAGTGGCCAGATCG 239
consensus_1964#1 CCCCGAACCATGAATGCCCACGGGCAGTCGCAGCGGCCGGCCAATGGAGTGGCCAGATCG 217
************************************************************
consensus_1964#0 GACAGCAAGATCAGCGCCAAGGCCCTCTACGAACAGAGGAAAAAGTACTCCAACTCTAAT 299
consensus_1964#1 GACAGCAAGATCAGCGCCAAGGCCCTCTACGAACAGAGGAAAAAGTACTCCAACTCTAAT 277
************************************************************
consensus_1964#0 TTTATCATGCAAGAAACATCACAGTATCATGTGGAGCATCTCTCTTCCTTCATTATGGAC 359
consensus_1964#1 TTTATCATGCAAGAAACATCACAGTATCATGTGGAGCATCTCTCCACCTTCATTATGGAC 337
******************************************** **************
consensus_1964#0 AAGGCAGAATCCATCGTCACCGTGGACGACGCCATCAAGAAA-CTCGCCCTTCTGGACTC 418
consensus_1964#1 AAGGCAGAATCCATCGTCACCGTGGACGACGCCATCAAGAAAACTCGCCCTTCAGGACTC 397
****************************************** ********** ******
consensus_1964#0 AAAGGACAAAA-TTTGGGCCCAAGAGGTGCTGCTGCAGGTCACAGACAAGGCGGTCAGGC 477
consensus_1964#1 AAAGGACAAAAATTTGGGCCCAAGAGGTGCTGCTGCAGGTCACAGACAAGGCGGTCAGGC 457
*********** ************************************************
consensus_1964#0 TGCTGGACTGCGACACGCAGGAGGAGCTGGAGAACTTCCCCCTCTCCACCATCCACATGA 537
consensus_1964#1 TGCTGGACTGCGACACGCAGGAGGAGCTGGAGAACTTCCCCCTCTCCACCATCCACATGA 517
************************************************************
consensus_1964#0 GCCAGACAGTCCCCAATCAGACGCGCTACGCCTCCGTGCTGCTGCTGGTGTGTCAGGACA 597
consensus_1964#1 GCCAGACAGTCCCCAATCAGACGCGCTACGCCTCCGTGCTGCTGCTGGTGTGTCAGGACA 577
************************************************************
consensus_1964#0 AAGACCAGCACCAGCCTGACATTCACTTCTTCCACTGCGACGAGGTCGACGCCGAGATAG 657
consensus_1964#1 AAGACCAGCACAAGCCTGACATTCACTTCT------------------------------ 607
*********** ******************
consensus_1964#0 TCCACGCGGATTTAGACAGCGCCCTTGGAGACAACAAGCACGGGAAGAAGATGAGACCC 716
consensus_1964#1 -----------------------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |