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Takifugu rubripes
cluster # 1977 cluster # 1977       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1977#0 length = 628 sequences # 3  
consensus_1977#1 length = 228 sequences # 1  

consensusID : consensus_1977#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 628
fasta sequence
                              [GCGCCACATCTGCAGCGTTCGGGTGTAGAGAGAAGCAGAGACCCCAACAACAATGTCTTCCCCAGCATCAACTCCCAGGCGCAAACGTGGACGGAACACAAATCCCGGCACCCCCAACAGTGAGGGGCCCACATCTCCCCCTTCACAGAGGAGGAGAGGCCAGGACTCCTCCGCCGGGGACCTGATGCCGATGCCCGTCTCCCCAACCACCGACCTGCTCAGCCCAGCAGCTCCTCAGGACACGTCCCTGTTCTC-CAGCCCACGTCCAAGTTATTTAGGAAATCCTAATGAGGTGGACATGAGCTCGCCTCTCATGTACGGGACCCCGAGCTCGAGGGTGGAAGGGACCCCTCGCAGCGGCGTGCGCGGCACCCCGGCCAGGCAGCGTCCCGATCTGGGGTCAGTCCGGAAGGCGCCGCAAGTTGATCTCCATTCGGAACCGCCAAGCGCCGATGGCGCCGTTGCCAGCGAGTCCAATGCAGGACAGCGACTGGTGATCTGGGGGACCGACGTCAATGTCGGGACCTGCAAGGAGAAGTTTCAGAGATTCCTGCAGAGGTTCATCGATCCGACCTCCAGCGAGGACGAGAACGCCGGCCTGGACCTGAACGAGCCTCTGTACATGCAG]

[+] EMBL CA590234             [GCGCCACATCTGCAGCGTTCGGGTGTAGAGAGAAGCAGAGACCCCAACAACAATGTCTTCCCCAGCATCAACTCCCAGGCGCAAACGTGGACGGAACACAAATCCCGGCACCCCCAACAGTGAGGGGCCCACATCTCCCCCTTCACAGAGGAGGAGAGGCCAGGACTCCTCCGCCGGGGACCTGATGCCGATGCCCGTCTCCCCAACCACCGACCTGCTCAGCCCAGCAGCTCCTCAGGACACGTCCCTGTTCTC CAGCCCACGTCCAAGTTATTTAGGAAATCCTAATGAGGTGGACATGAGCTCGCCTCTCATGTACGGGACCCCGAGCTCGAGGGTGGAAGGGACCCCTCGCAGCGGCGTGCGCGGCACCCCGGCCAGGCAGCGTCCCGATCTGGGGTCAGTCCGGAAGGCGCCGCAAGTTGATCTCCATTCGGAACCGCCAAGCGCCGATGGCGCCGTTGCCAGCGAGTCCAATGCAGGACAGCGACTGGTGATCTGGGGGACCGACGTCAATGTCGGGACCTGCAAGGAGAAGTTTCAGAGATTCCTGCAGAGGTTCATCGATCCGACCTCCAGCGAGGACGAGAACGCCGGCCTGGACCTGAACGAG               ]
[+] EMBL CA589446             [          TGCAGCGTTCGGGTGTAGAGAGAAGCAGAGACCCCAACAACAATGTCTTCCCCAGCATCAACTCCCAGGCGCAAACGTGGACGGAACACAAATCCCGGCACCCCCAACAGTGAGGGGCCCACATCTCCCCCTTCACAGAGGAGGAGAGGCCAGGACTCCTCCGCCGGGGACCTGATGCCGATGCCCGTCTCCCCAACCACCGACCTGCTCAGCCCAGCAGCTCCTCAGGACACGTCCCTGTTCTCTCTTCCCACGTCCAAGTTATTTAGGAAATCCTAATGAGGTGGACATGAGCTCGCCTCTCATGTACGGGACCCCGAGCTCGAGGGTGGAAGGGACCCCTCGCAGCGGCGTGCGCGGCACCCCGGCCAGGCAGCGTCCCGATCTGGGGTCAGTCCGGAAGGCGCCGCAAGTTGATCTCCATTCGGAACCGCCAAGCGCCGATGGCGCCGTTGCCAGCGAGTCCAATGCAGGACAGCGACTGGTGATCTGGGGGACCGACGTCAATGTCGGGACCTGCAAGGAGAAGTTTCAGAGATTCCTGCAGAGGTTCATCGATCCGACCTCCAGCGAGGACGAGAACGCCGGCCTGGACCTGAACGAGCCTCTGTACATGCAG]
[+] EMBL FR0060633            [                                                                        TCCCAGGCGCAAACGTGGACGGAGCACAAATCCCGGCACCCCCAACAGTGAGGGGCCCACATCTCCCCCTTCACAGAGGAGGAGAGGCCAGGACTCCTCCGCCGGGGACCTGAGGCCGATGCCTGTCTCCCCAACCACCGACCTGCTCAGCCGAGGAGCTCCTGAGGACACGTCCCTGTTCTC CAGCCCACGTCCAGGTTATTTAGGAAATCCTAATGAGGGGGACATGAGCTCGCCTCTCATGGACGGGACCCCGAGCTGGAGGG GGAGGGGACCCCTCGCAGCGGCGGGCGCGG ACCCCGGCCAGGCA                                                                                                                                                                                                                                                    ]


>consensus_1977#0 GCGCCACATCTGCAGCGTTCGGGTGTAGAGAGAAGCAGAGACCCCAACAACAATGTCTTC CCCAGCATCAACTCCCAGGCGCAAACGTGGACGGAACACAAATCCCGGCACCCCCAACAG TGAGGGGCCCACATCTCCCCCTTCACAGAGGAGGAGAGGCCAGGACTCCTCCGCCGGGGA CCTGATGCCGATGCCCGTCTCCCCAACCACCGACCTGCTCAGCCCAGCAGCTCCTCAGGA CACGTCCCTGTTCTCCAGCCCACGTCCAAGTTATTTAGGAAATCCTAATGAGGTGGACAT GAGCTCGCCTCTCATGTACGGGACCCCGAGCTCGAGGGTGGAAGGGACCCCTCGCAGCGG CGTGCGCGGCACCCCGGCCAGGCAGCGTCCCGATCTGGGGTCAGTCCGGAAGGCGCCGCA AGTTGATCTCCATTCGGAACCGCCAAGCGCCGATGGCGCCGTTGCCAGCGAGTCCAATGC AGGACAGCGACTGGTGATCTGGGGGACCGACGTCAATGTCGGGACCTGCAAGGAGAAGTT TCAGAGATTCCTGCAGAGGTTCATCGATCCGACCTCCAGCGAGGACGAGAACGCCGGCCT GGACCTGAACGAGCCTCTGTACATGCAG



consensusID : consensus_1977#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 228
fasta sequence
                              [GACAGGGGTGTACTCAACACAAATCCCTCCCCCCCAACAGTGAGTGCCCCACATCTCCCCCTTCACAGAGGAGAAGAGGCCACTACTCCTCCGCCGGGGCCTGATGCCGATGCCCGTCTCCACAACCACCGACCTGCTCAGCCCAGCAGCTCGTGAGGACACGCCCCTGTTCTCCAGCCCACGTCCAGGTTATTTAGGAAATCCTAATGAGGCGGACATGAGGCTCCC]

[+] EMBL FR0061021            [GACAGGGGTGTACTCAACACAAATCCCTCCCCCCCAACAGTGAGTGCCCCACATCTCCCCCTTCACAGAGGAGAAGAGGCCACTACTCCTCCGCCGGGGCCTGATGCCGATGCCCGTCTCCACAACCACCGACCTGCTCAGCCCAGCAGCTCGTGAGGACACGCCCCTGTTCTCCAGCCCACGTCCAGGTTATTTAGGAAATCCTAATGAGGCGGACATGAGGCTCCC]


>consensus_1977#1 GACAGGGGTGTACTCAACACAAATCCCTCCCCCCCAACAGTGAGTGCCCCACATCTCCCC CTTCACAGAGGAGAAGAGGCCACTACTCCTCCGCCGGGGCCTGATGCCGATGCCCGTCTC CACAACCACCGACCTGCTCAGCCCAGCAGCTCGTGAGGACACGCCCCTGTTCTCCAGCCC ACGTCCAGGTTATTTAGGAAATCCTAATGAGGCGGACATGAGGCTCCC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1977#0      GCGCCACATCTGCAGCGTTCGGGTGTAGAGAGAAGCAGAGACCCCAACAACAATGTCTTC 60
consensus_1977#1      ------------------------------------------------------------
                                                                                  

consensus_1977#0      CCCAGCATCAACTCCCAGGCGCAAACGTGGACGGAACACAAATCCCGGCACCCCCAACAG 120
consensus_1977#1      -------------------GACAGGGGTGTACTCAACACAAATCCCTCC-CCCCCAACAG 40
                                           **   *** **  ************  * **********

consensus_1977#0      TGAGGGGCCCACATCTCCCCCTTCACAGAGGAGGAGAGGCCAGGACTCCTCCGCCGGGGA 180
consensus_1977#1      TGAGTGCCCCACATCTCCCCCTTCACAGAGGAGAAGAGGCCACTACTCCTCCGCCGGGG- 99
                      **** * ************************** ********  *************** 

consensus_1977#0      CCTGATGCCGATGCCCGTCTCCCCAACCACCGACCTGCTCAGCCCAGCAGCTCCTCAGGA 240
consensus_1977#1      CCTGATGCCGATGCCCGTCTCCACAACCACCGACCTGCTCAGCCCAGCAGCTCGTGAGGA 159
                      ********************** ****************************** * ****

consensus_1977#0      CACGTCCCTGTTCTCCAGCCCACGTCCAAGTTATTTAGGAAATCCTAATGAGGTGGACAT 300
consensus_1977#1      CACGCCCCTGTTCTCCAGCCCACGTCCAGGTTATTTAGGAAATCCTAATGAGGCGGACAT 219
                      **** *********************** ************************ ******

consensus_1977#0      GAGCTCGCCTCTCATGTACGGGACCCCGAGCTCGAGGGTGGAAGGGACCCCTCGCAGCGG 360
consensus_1977#1      GAGGCTCCC--------------------------------------------------- 228
                      ***    **                                                   

consensus_1977#0      CGTGCGCGGCACCCCGGCCAGGCAGCGTCCCGATCTGGGGTCAGTCCGGAAGGCGCCGCA 420
consensus_1977#1      ------------------------------------------------------------
                                                                                  

consensus_1977#0      AGTTGATCTCCATTCGGAACCGCCAAGCGCCGATGGCGCCGTTGCCAGCGAGTCCAATGC 480
consensus_1977#1      ------------------------------------------------------------
                                                                                  

consensus_1977#0      AGGACAGCGACTGGTGATCTGGGGGACCGACGTCAATGTCGGGACCTGCAAGGAGAAGTT 540
consensus_1977#1      ------------------------------------------------------------
                                                                                  

consensus_1977#0      TCAGAGATTCCTGCAGAGGTTCATCGATCCGACCTCCAGCGAGGACGAGAACGCCGGCCT 600
consensus_1977#1      ------------------------------------------------------------
                                                                                  

consensus_1977#0      GGACCTGAACGAGCCTCTGTACATGCAG 628
consensus_1977#1      ----------------------------
                                                  




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)