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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1988#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 913 fasta sequence
[CTCGGGGACGCAGTGACGTCACCAAACCAGCCGTGCTGCTTAATCGATTGAGCTTCAGGCTGAGGTGACCAGTCCGACAGCTGATTACCAACACCTGATTACCAACACCTGATGACCTGCTTTCACTGGCAGCACAGTCGAAGGAGAAGCCTAAGGTGGAATTTGGTCGTGGAACGACAGTCAACAGGAGGTCGAGCTGACCAATATGGCGGGCACAAGTGGCGTCCTGGTTATCTAATAAACTAGCGATGGGACTAACTGGAACTGTACTCTTGCAACCCAGGACACTATAGGATTGTAACCCCCTCGTCAGTGTCATATGGCGACTGCTCAAGCCAGGATCGGCCATCAGGTCTTCGTGGTGCTGGACGTGGTTCTGCGAGTTCCCTGTATTTTTATTCTAGACGCCATTTTTAACTCCCACTATGATGCAGGTTCTGGATGGGCCGGTTCGGTGGCAAAGTTGGCGATCAGAATCACAGGTGTCTTCATCTCCAGTGTGGTTCTGTTGCTGTCCCAGAAAGCTTTGTTTAAGTTCTACACGCTCTTCTGTGCTGCTCTATTAGGGATGGCAGCGGTGCTCTTCAACTATTATGCCACTTCTCACTCCGATATTTACAGCTACTACTATAATGCGGCACTGGGCTTCCAACTGCTGCCCAAGAATGCTTCGACACTATGGATGGGTATGGCTGTTGTCCAGCTCATTTTTGGTCTTGGCTACATTTTCCTCCTCAATGTCCAGTCACTCTTTGCTGCAGTTGTGGTCCTGGATATTATGATCCCTCTGTGGACACTGATGATTGAGCTACCAGTGGATGTTAGGCAGCTGGTTGCCACATTGTCAGGCCTGTTGCTTGCACTTAATACAGCTGTATGCCTGGCAATGAAGCTTAAATGCTTCTACTATTCC]
[+] EMBL CA589232 [CTCGGGGACGCAGTGACGTCACCAAACCAGCCGTGCTGCTTAATCGATTGAGCTTCAGGCTGAGGTGACCAGTCCGACAGCTGATTACCAACACCTGATTACCAACACCTGATGACCTGCTTTCACTGGCAGCACAGTCGAAGGAGAAGCCTAAGGTGGAATTTGGTCGTGGAACGACAGTCAACAGGAGGTCGAGCTGACCAATATGGCGGGCACAAGTGGCGTCCTGGTTATCTAATAAACTAGCGATGGGACTAACTGGAACTGTACTCTTGCAACCCAGGACACTATAGGATTGTAACCCCCTCGTCAGTGTCATATGGCGACTGCTCAAGCCAGGATCGGCCATCAGGTCTTCGTGGTGCTGGACGTGGTTCTGCGAGTTCCCTGTATTTTTATTCTAGACGCCATTTTTAACTCCCACTATGATGCAGGTTCTGGATGGGCCGGTTCGGTGGCAAAGTTGGCGATCAGAATCACAGGTGTCTTCATCTCCAGTGTGGTTCTGTTGCTGTCCCAGAAAGCTTTGTTTAAGTTCTACACGCTCTTCTGTGCTGCTCTATTAGGGATGGCAGCGGTGCTCTTCAACTATTATGCCACTTCTCACTCCGAT ]
[+] EMBL CA333078 [ CTCAAGCCAGGATCGGCCATCAGGTCTTCGTGGTGCTGGACGTGGTTCTGCGAGTTCCCTGTATTTTTATTCTAGACGCCATTTTTAACTCCCACTATGATGCAGGTTCTGGATGGGCCGGTTCGGTGGCAAAGTTGGCGATCAGAATCACAGGTGTCTTCATCTCCAGTGTGGTTCTGTTGCTGTCCCAGAAAGCTTTGTTTAAGTTCTACACGCTCTTCTGTGCTGCTCTATTAGGGATGGCAGCGGTGCTCTTCAACTATTATGCCACTTCTCACTCCGATATTTACAGCTACTACTATAATGCGGCACTGGGCTTCCAACTGCTGCCCAAGAATGCTTCGACACTATGGATGGGTATGGCTGTTGTCCAGCTCATTTTTGGTCTTGGCTACATTTTCCTCCTCAATGTCCAGTCACTCTTTGCTGCAGTTGTGGTCCTGGATATTATGATCCCTCTGTGGACACTGATGATTGAGCTACCAGTGGATGTTAGGCAGCTGGTTGCCACATTGTCAGGCCTGTTGCTTGCACTTAATACAGCTGTATGCCTGGCAATGAAGCTTAAATGCTTCTACTATTCC]
consensusID : consensus_1988#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 497 fasta sequence
[TTGAGCTTCAGGCTGAGGTGACCAGTCCGACAGCTGATTACCAACACCTGATTACCAACACCTGATGACCTGCTTTCACTGGCAGCACAGTCGAAGGAGAAGCCTAAGGTGGAATTTGGTCGTGGAACGACAGTCAACAGGAGGTCGAGCTGACCAATATGGCGGGCACAAGTGGCGTCCTGGTTATCTAATAAACTAGCGATGGGACTAACTGGAACTGTACTCTTGCAACCCAGGACACTATAGGATTGTAACCCCCTCGTCAGTGTCATATGGCGACTGCTCAAGCCAGGATCGGCCATCAGGTCTTCGTGGTGCTGGACGTGGGTCTGCGAGTTCCCTGGAATTTTATTCTAGACGCCATTTTTAACTCCCACTATGATGCAGGTTCTGGATGGGCCGGTTCGGTGGCAAAGTTGGCGATCAGAATCACAGGGATACATGTCAAACTGGGAAGTTCTTTGGGATCTGACAAGTAACCTGATCATCTCTGGTTG]
[+] EMBL CA332826 [TTGAGCTTCAGGCTGAGGTGACCAGTCCGACAGCTGATTACCAACACCTGATTACCAACACCTGATGACCTGCTTTCACTGGCAGCACAGTCGAAGGAGAAGCCTAAGGTGGAATTTGGTCGTGGAACGACAGTCAACAGGAGGTCGAGCTGACCAATATGGCGGGCACAAGTGGCGTCCTGGTTATCTAATAAACTAGCGATGGGACTAACTGGAACTGTACTCTTGCAACCCAGGACACTATATGATTGTAACCCCCTCGTCAGTGTCATATGGCGACTGCTCAAGCCAGGATCGGCCATCAGGTCTTCGTGGTGCTGGACGTGGTTCTGCGAGTTCCCTGTATTTTTATTCTAGACGCCATTTTTAACTCCCACTATGATGCAGGTTCTGGATGGGCCGGTTCGGTGGCAAAGTTGGCGATCAGAATCACAGGGATACATGTCAAACTGGGAAGTTCTTTGGGATCTGACAAGTAACCTGATCATCTCTGGTTG]
[+] EMBL FR0060178 [ GCACAGTCGAAGGAGAAGCCTAAGGTGGAATTTGGTCGTGGAACGACAGTCAACAGGAGGTCGAGCTGACCAATATGGCGGGCACAAGTGGCGTCCTGGTTATCTAATAAACTAGCGATGGGACTAACTGGAACTGTACTCTTGCAACCCAGGACACTATAGGATTGTAACCCCCTCGTCAGTGTCATATGGCGACTGCTCAAGCCAGGATCGGCCATCAGGTCTTCGTGGTGCTGGACGTGGGTCTGCGAGTTCCCTGGTATTTTATTCTAGACGCCATTTTTAACTCCCACTAT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1988#0 CTCGGGGACGCAGTGACGTCACCAAACCAGCCGTGCTGCTTAATCGATTGAGCTTCAGGC 60
consensus_1988#1 -----------------------------------------------TTGAGCTTCAGGC 13
*************
consensus_1988#0 TGAGGTGACCAGTCCGACAGCTGATTACCAACACCTGATTACCAACACCTGATGACCTGC 120
consensus_1988#1 TGAGGTGACCAGTCCGACAGCTGATTACCAACACCTGATTACCAACACCTGATGACCTGC 73
************************************************************
consensus_1988#0 TTTCACTGGCAGCACAGTCGAAGGAGAAGCCTAAGGTGGAATTTGGTCGTGGAACGACAG 180
consensus_1988#1 TTTCACTGGCAGCACAGTCGAAGGAGAAGCCTAAGGTGGAATTTGGTCGTGGAACGACAG 133
************************************************************
consensus_1988#0 TCAACAGGAGGTCGAGCTGACCAATATGGCGGGCACAAGTGGCGTCCTGGTTATCTAATA 240
consensus_1988#1 TCAACAGGAGGTCGAGCTGACCAATATGGCGGGCACAAGTGGCGTCCTGGTTATCTAATA 193
************************************************************
consensus_1988#0 AACTAGCGATGGGACTAACTGGAACTGTACTCTTGCAACCCAGGACACTATAGGATTGTA 300
consensus_1988#1 AACTAGCGATGGGACTAACTGGAACTGTACTCTTGCAACCCAGGACACTATAGGATTGTA 253
************************************************************
consensus_1988#0 ACCCCCTCGTCAGTGTCATATGGCGACTGCTCAAGCCAGGATCGGCCATCAGGTCTTCGT 360
consensus_1988#1 ACCCCCTCGTCAGTGTCATATGGCGACTGCTCAAGCCAGGATCGGCCATCAGGTCTTCGT 313
************************************************************
consensus_1988#0 GGTGCTGGACGTGGTTCTGCGAGTTCCCTGTATTTTTATTCTAGACGCCATTTTTAACTC 420
consensus_1988#1 GGTGCTGGACGTGGGTCTGCGAGTTCCCTGGAATTTTATTCTAGACGCCATTTTTAACTC 373
************** *************** * ***************************
consensus_1988#0 CCACTATGATGCAGGTTCTGGATGGGCCGGTTCGGTGGCAAAGTTGGCGATCAGAATCAC 480
consensus_1988#1 CCACTATGATGCAGGTTCTGGATGGGCCGGTTCGGTGGCAAAGTTGGCGATCAGAATCAC 433
************************************************************
consensus_1988#0 AGGTGTCTTCATCTC-CAGTGTGGTTCTGTTGCTGTCCCAGAAAGCTTTGTTTAAGTTCT 539
consensus_1988#1 AGGGATACATGTCAAACTGGGAAGTTCT-TTGGGATCTGACAAGTAACCTGATCATCTCT 492
*** * ** * * * ***** *** ** * ** * * ***
consensus_1988#0 ACACGCTCTTCTGTGCTGCTCTATTAGGGATGGCAGCGGTGCTCTTCAACTATTATGCCA 599
consensus_1988#1 GGTTG------------------------------------------------------- 497
*
consensus_1988#0 CTTCTCACTCCGATATTTACAGCTACTACTATAATGCGGCACTGGGCTTCCAACTGCTGC 659
consensus_1988#1 ------------------------------------------------------------
consensus_1988#0 CCAAGAATGCTTCGACACTATGGATGGGTATGGCTGTTGTCCAGCTCATTTTTGGTCTTG 719
consensus_1988#1 ------------------------------------------------------------
consensus_1988#0 GCTACATTTTCCTCCTCAATGTCCAGTCACTCTTTGCTGCAGTTGTGGTCCTGGATATTA 779
consensus_1988#1 ------------------------------------------------------------
consensus_1988#0 TGATCCCTCTGTGGACACTGATGATTGAGCTACCAGTGGATGTTAGGCAGCTGGTTGCCA 839
consensus_1988#1 ------------------------------------------------------------
consensus_1988#0 CATTGTCAGGCCTGTTGCTTGCACTTAATACAGCTGTATGCCTGGCAATGAAGCTTAAAT 899
consensus_1988#1 ------------------------------------------------------------
consensus_1988#0 GCTTCTACTATTCC 913
consensus_1988#1 --------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |