These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1992#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 620 fasta sequence [TTGGGGTCATTTCACAACGCAAAGCTCGACCACCAGCCATGAATCCTGACATCGTGAAAGAAAGACAGAATGCCACGTTTAACGTGGAGAAACTGACCAGTATTCTGGACGGGAGCACAGAAAAGACCCGAAGAAGACGAGAAATCGAGTCGATGGTTCTGAACGACCCCGACTTCCAGGAGCAGGACCCCAACTTCCTGTCCCGCAGCGAGCGCTACGACCAGGCCGTGAGGAAGAGCGCTCAGATGATCCTGAAGCTCAGGGAGTTCGGCATTTCTGACCCGGACGAGATCTACTACTATAAAAACTGTGTGCATCCAGACAGGCCCGAGCCCTTGGATCTCCATCTGGGGATGTTCCTGCCCACATTGCTAAACCAGGCCACCCCAGAGCAAATGGACCGGTTCTTCACACCCGCCTGGAACCTCCAGATCATTGGCACCTACGCACAGACAGAGATGGGTCACGGCACTCACCTCCGAGGACTGGAGACCACGGCGACCTTTGACCCCGCCACGCAGGAGTTTGTCCTCAACAGTCCCACCATCAGCTCCATCAAGTGGTGGCCCGGCGGGCTTGGGAAAACCTCCAACCACGCCATCGTCCTGGGTCAGCTCCAC] [+] EMBL CA588975 [TTGGGGTCATTTCACAACGCAAAGCTCGACCACCAGCCATGAATCCTGACATCGTGAAAGAAAGACAGAATGCCACGTTTAACGTGGAGAAACTGACCAGTATTCTGGACGGGAGCACAGAAAAGACCCGAAGAAGACGAGAAATCGAGTCGATGGTTCTGAACGACCCCGACTTCCAGGAGCAGGACCCCAACTTCCTGTCCCGCAGCGAGCGCTACGACCAGGCCGTGAGGAAGAGCGCTCAGATGATCCTGAAGCTCAGGGAGTTCGGCATTTCTGACCCGGACGAGATCTACTACTATAAAAACTGTGTGCATCCAGACAGGCCCGAGCCCTTGGATCTCCATCTGGGGATGTTCCTGCCCACATTGCTAAACCAGGCCACCCCAGAGCAAATGGACCGGTTCTTCACACCCGCCTGGAACCTCCAGATCATTGGCACCTACGCACAGACAGAGATGG ] [+] EMBL CA333313 [ AACGCAAAGCTCGACCACCAGCCATGAATCCTGACATCGTGAAAGAAAGACAGAATGCCACGTTTAACGTGGAGAAACTGACCAATATTCTGGACGGGAGCACAGAAAAGACCCGAAGAAGACGAGAAATCGAGTCGATGGTTCTGAACGACCCCGACTTCCAGGAGCAGGACCCCAACTTCCTGTCCCGCAGCGAGCGCTACGACCAGGCCGTGAGGAAGAGCGCTCAGATGATCCTGAAGCTCAGGGAGTTCGGCATTTCTGACCCGGACGAGATCTACTACTATAAAAACTGTGTGCATCCAGACAGGCCCGAGCCCTTGGATCTCCATCTGGGGATGTTCCTGCCCACATTGCTAAACCAGGCCACCCCAGAGCAAATGGACCGGTTCTTCACACCCGCCTGGAACCTCCAGATCATTGGCACCTACGCACAGACAGAGATGGGTCACGGCACTCACCTCCGAGGACTGGAGACCACGGCGACCTTTGACCCCGCCACGCAGGAGTTTGTCCTCAACAGTCCCACCATCAGCTCCATCAAGTGGTGGCCCGGCGGGCTTGGGAAAACCTCCAACCACGCCATCGTCCTGGGTCAGCTCCAC] consensusID : consensus_1992#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 617 fasta sequence [GAATGCCACGTTTAACGTGGAGAAACTGACCAATATTCTGGACGGGAGCACAGAAAAGACCCGAAGAAGACGAGAAATCGAGTCGATGGTTCTGAACGACCCCGACTTCCAGGAGCAGGACCCCAACTTCCTGTCCCGCAGCGAGCGCTACGACCAGGCCGTGAGGAAGAGCGCTCAGATGATCCTGAAGCTCAGGGAGTTCGGCATTTCTGACCCGGACGAGATCTACTACTATAAAAATCTTGCTATGGCTAACCAACATGAGGCCCTGNGGCTGCACTTTGTCATGTTCCTCCCAACCCTGTACAGCCAGTGTGACCCTCAGCAGTCCAGAAAATGGATCCCTCTGGCTCAGTCCTTCCAGGTGCTCGGTACCTATGCCCAAACTGAGATGGGTCACGGCACTCACCTCCGAGGACTGGAGACCACGGCGACCTTTGACCCCGCCACGCAGGAGTTTGTCCTCAACAGTCCCACCATCAGCTCCATCAAGTGGTGGCCCGGCGGGCTTGGGAAAACCTCCAACCACGCCATCGTCCTGGCTCAGCTCCACACCCAGGGAAACTGCCACGGCCTGCATGCTTTTATTGTGCCGATCCGTGACATGGACACGCACG] [+] EMBL FR0059675 [GAATGCCACGTTTAACGTGGAGAAACTGACCAATATTCTGGACGGGAGCACAGAAAAGACCCGAAGAAGACGAGAAATCGAGTCGATGGTTCTGAACGACCCCGACTTCCAGGAGCAGGACCCCAACTTCCTGTCCCGCAGCGAGCGCTACGACCAGGCCGTGAGGAAGAGCGCTCAGATGATCCTGAAGCTCAGGGAGTTCGGCATTTCTGACCCGGACGAGATCTACTACTATAAAAATCTTGCTATGGCTAACCAACATGAGGCCCTGNGGCTGCACTTTGTCATGTTCCTCCCAACCCTGTACAGCCAGTGTGACCCTCAGCAGTCC ] [+] EMBL BU805260 [ GCCACGTTTAACGTGGAGAAACTGACCAATATTCTGGACGGGAGCACAGAAAAGACCCGAAGAAGACGAGAAATCGAGTCGATGGTTCTGAACGACCCCGACTTCCAGGAGCAGGACCCCAACTTCCTGTCCCGCAGCGAGCGCTACGACCAGGCCGTGAGGAAGAGCGCTCAGATGATCCTGAAGCTCAGGGAGTTCGGCATTTCTGACCCGGACGAGATCTACTACTATAAAAATCTTGCTATGGCTAACCAACATGAGGCCCTGGGGCTGCACTTTATCATGTTCCTCCCAACCCTGTACAGCCAGTGTGACCCTCAGCAGTCCAGAAAATGGATCCCTCTGGCTCAGTCCTTCCAGGTGCTCGGTACCTATGCCCAAACTGAGATGGGTCACGGCACTCACCTCCGAGGACTGGAGACCACGGCGACCTTTGACCCCGCCACGCAGGAGTTTGTCCTCAACAGTCCCACCATCAGCTCCATCAAGTGGTGGCCCGGCGGGCTTGGGAAAACCTCCAACCACGCCATCGTCCTGGCTCAGCTCCACACCCAGGGAAACTGCCACGGCCTGCATGCTTTTATTGTGCCGATCCGTGACATGGACACGCACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1992#0 TTGGGGTCATTTCACAACGCAAAGCTCGACCACCAGCCATGAATCCTGACATCGTGAAAG 60 consensus_1992#1 ------------------------------------------------------------ consensus_1992#0 AAAGACAGAATGCCACGTTTAACGTGGAGAAACTGACCAGTATTCTGGACGGGAGCACAG 120 consensus_1992#1 -------GAATGCCACGTTTAACGTGGAGAAACTGACCAATATTCTGGACGGGAGCACAG 53 ******************************** ******************** consensus_1992#0 AAAAGACCCGAAGAAGACGAGAAATCGAGTCGATGGTTCTGAACGACCCCGACTTCCAGG 180 consensus_1992#1 AAAAGACCCGAAGAAGACGAGAAATCGAGTCGATGGTTCTGAACGACCCCGACTTCCAGG 113 ************************************************************ consensus_1992#0 AGCAGGACCCCAACTTCCTGTCCCGCAGCGAGCGCTACGACCAGGCCGTGAGGAAGAGCG 240 consensus_1992#1 AGCAGGACCCCAACTTCCTGTCCCGCAGCGAGCGCTACGACCAGGCCGTGAGGAAGAGCG 173 ************************************************************ consensus_1992#0 CTCAGATGATCCTGAAGCTCAGGGAGTTCGGCATTTCTGACCCGGACGAGATCTACTACT 300 consensus_1992#1 CTCAGATGATCCTGAAGCTCAGGGAGTTCGGCATTTCTGACCCGGACGAGATCTACTACT 233 ************************************************************ consensus_1992#0 ATAAAAACTGTGTGCATCCAGACAGGCCCGAGCCCTTGGATCTCCATCTGGGGATGTTCC 360 consensus_1992#1 ATAAAAATCTTGCTATGGCTAACCAACATGAGGCCCTGNGGCTGCACTTTGTCATGTTCC 293 ******* ** * ** * *** ** ** ** ** * * ******* consensus_1992#0 TGCCCACATTGCTAAACCAGGCCACCCCAGAGCAAATGGACCGGTTCTTCACACCCGCCT 420 consensus_1992#1 TCCCAACCCTGTACAGCCAGTGTGACCCTCAGCAGTCCAGAAAATGGATCCCTCTGGCTC 353 * ** ** ** * **** *** **** * ** * * ** consensus_1992#0 GGAACCTCCAGATCATTGGCACCTACGCACAGACAGAGATGGGTCACGGCACTCACCTCC 480 consensus_1992#1 AGTCCTTCCAGGTGCTCGGTACCTATGCCCAAACTGAGATGGGTCACGGCACTCACCTCC 413 * * ***** * * ** ***** ** ** ** ************************* consensus_1992#0 GAGGACTGGAGACCACGGCGACCTTTGACCCCGCCACGCAGGAGTTTGTCCTCAACAGTC 540 consensus_1992#1 GAGGACTGGAGACCACGGCGACCTTTGACCCCGCCACGCAGGAGTTTGTCCTCAACAGTC 473 ************************************************************ consensus_1992#0 CCACCATCAGCTCCATCAAGTGGTGGCCCGGCGGGCTTGGGAAAACCTCCAACCACGCCA 600 consensus_1992#1 CCACCATCAGCTCCATCAAGTGGTGGCCCGGCGGGCTTGGGAAAACCTCCAACCACGCCA 533 ************************************************************ consensus_1992#0 TCGTCCTGGGTCAGCTCCAC---------------------------------------- 620 consensus_1992#1 TCGTCCTGGCTCAGCTCCACACCCAGGGAAACTGCCACGGCCTGCATGCTTTTATTGTGC 593 ********* ********** consensus_1992#0 ------------------------ consensus_1992#1 CGATCCGTGACATGGACACGCACG 617 |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |