These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 657 fasta sequence [TTTACAGGCTGTCCTTCACACGTTCGCCTCTCAGTTCAGCGACAACACACTCCAACCGGCCGCCACGACGTTTCCGCCGCAGATTGGACTCATTTCGACGGGTTTAAAAACATTTTTGTGTGTGTTTGTTTTCATCAAGTGATCGCGGAAGCTGCAGGCCGAGCGCCCTTTACGGGGACGCGGAGGTCCCGGACACGCCAAGAGTGACTGGTCCCCCCCCCGACCGACGGTACCGTCCATGGTTGTCTACAGGACGCTTTCTTCTTTTTTAAAGGTCATTTTTCTTTGAATCTGAGGAAGAAACAAGTGACGGATTTTTAGCCAAGGAGATTGAAAAATAGCATGATTCTTTGTGTCCCAGGTCCGAGAGCACTGCCCGCCGCTCCGGCCCCTGAAGCCCCGCGGGGCATGCGGGCAGGAACTGGAACCCCCACTCCTTGCCTTCAGAGCACCCATCCGCTGTGGGATCCCACCAAGGACCTGCGGGCGATCGCCAGCAACTTCTGCTACTTGGAAAATTCAGGATGGTACTGGGGGGCCATAACAGCAGCTCAGGCCCACGCTGCGCTGCAAGAGGCTTCCGAAGGGGCGTTTTTGGTACGTGACAGCAGCCACCCGCTCTACATGCTGACGCTGTCAGTCAGGACCGCCCGCGGG] [+] EMBL BU807842 [TTTACAGGCTGTCCTTCACACGTTCGCCTCTCAGTTCAGCGACAACACACTCCAACCGGCCGCCACGACGTTTCCGCCGCAGATTGGACTCATTTCGACGGGTTTAAAAACATTTTTGTGTGTGTTTGTTTTCATCAAGTGATCGCGGAAGCTGCAGGCCGAGCGCCCTTTACGGGGACGCGGAGGTCCCGGACACGCCAAGAGTGACTGGTCCCCCCCCCGACCGACGGTACCGTCCATGGTTGTCTACAGGACGCTTTCTTCTTTTTTAAAGGTCATTTTTCTTTGAATCTGAGGAAGAAACAAGTGACGGATTTTTAGCCAAGGAGATTGAAAAATAGCATGATTCTTTGTGTCCCAGGTCCGAGAGCACTGCCCGCCGCTCCGGCCCCTGAAGCCCCGCGGGGCATGCGGGCAGGAACTGGAACCCCCACTCCTTGCCTTCAGAGCACCCATCCGCTGTGGGATCCCACCAAGGACCTGCGGGCGATCGCCAGCAACTTCTGCTACTTGGAAAATTCAGGATGGTACTGGGGGGCCATAACAGCAGCTCAGGCCCACGCTGCGCTGCAAGAGGCTTCCGAAGGGGCGTTTTTGGTACGTGACAGCAGCCACCCGCTCTACATGCTGACGCTGTCAGTCAGGACCGCCCGCGGG] consensusID : consensus_2#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 563 fasta sequence [GAAAGATTCTTTTAATCAATAAATAAAATCCGATTTTTCCTTTTCTGCCAGTCCGAGAGCACTGCCCGCCGCTCCGGCCCCTGAAGCCCCGCGGGGCATGCGGGCAGGAACTGGAACCCCCACTCCTTGCCTTCAGAGCACCCATCCGCTGTGGGATCCCACCAAGGACCTGCGGGCGATCGCCAGCAACTTCTGCTACTTGGAAAATTCAGGTATGGTGTGAAAGCACCAGAGGCGATAAACTCTGGGAGCCACTAACTGCCTGGGTTTATAGCACAGTGTGTGTTTAAATTCCAAATCGGTGTCACGGTTCTGGTGAAATCCACGTGAACTGAGTCCACTCACAGAATTGTGTCTGCGCAGGATGGTACTGGGGGGCCATAACAGCAGCTCAGGCCCACGCTGCGCTGCAAGAGGCTTCCGAAGGGGCGTTTTTGGTACGTGACAGCAGCCACCCGCTCTACATGCTGACGCTGTCAGTCAGGACCGCCCGCGGGCCCACCAGCATACGCATCCAGTACAGCAGCGCCCAGTTTCTCCTGGACTCCAGCTCCCCGGCCCGG] [+] EMBL CA331231 [GAAAGATTCTTTTAATCAATAAATAAAATCCGATTTTTCCTTTTCTGCCAGTCCGAGAGCACTGCCCGCCGCTCCGGCCCCTGAAGCCCCGCGGGGCATGCGGGCAGGAACTGGAACCCCCACTCCTTGCCTTCAGAGCACCCATCCGCTGTGGGATCCCACCAAGGACCTGCGGGCGATCGCCAGCAACTTCTGCTACTTGGAAAATTCAGGTATGGTGTGAAAGCACCAGAGGCGATAAACTCTGGGAGCCACTAACTGCCTGGGTTTATAGCACAGTGTGTGTTTAAATTCCAAATCGGTGTCACGGTTCTGGTGAAATCCACGTGAACTGAGTCCACTCACAGAATTGTGTCTGCGCAGGATGGTACTGGGGGGCCATAACAGCAGCTCAGGCCCACGCTGCGCTGCAAGAGGCTTCCGAAGGGGCGTTTTTGGTACGTGACAGCAGCCACCCGCTCTACATGCTGACGCTGTCAGTCAGGACCGCCCGCGGGCCCACCAGCATACGCATCCAGTACAGCAGCGCCCAGTTTCTCCTGGACTCCAGCTCCCCGGCCCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2#0 TTTACAGGCTGTCCTTCACACGTTCGCCTCTCAGTTCAGCGACAACACACTCCAACCGGC 60 consensus_2#1 ------------------------------------------------------------ consensus_2#0 CGCCACGACGTTTCCGCCGCAGATTGGACTCATTTCGACGGGTTTAAAAACATTTTTGTG 120 consensus_2#1 -----------------------------------------------------------G 1 * consensus_2#0 TGTGTTTGTTTTCATCAAGTGATCGCGGAAGCTGCAGGCCGAGCGCCCTTTACGGGGACG 180 consensus_2#1 AAAGATTCTTTTAATCAATAAAT-----AAAATCCGATTT---TTCCTTTTCTGCCAGTC 53 * ** **** ***** ** ** * * ** *** * consensus_2#0 CGGAGGTCCCGGACACGCCAAGAGTGACTGGTCCCCCCCCCGACCGACGGTACCGTCCAT 240 consensus_2#1 CGAGAGCACTGCCCGCCGCTCCGGCCCCTGAAGCCCCGCGGGGCATGCGG-GCAGGAACT 112 ** * * * * * * * *** **** * * * *** * * * consensus_2#0 GGTTGTCTACAGGACGCTTTCTTCTTTTTTAAAGGTCATTTTTCTTTGAATCTGAGGAAG 300 consensus_2#1 GGAACCCC------CACTCCTTGCCTTCAGAGCACCCATCCGCTGTGGGATCCCACCAAG 166 ** * * ** * * ** * *** * * *** * *** consensus_2#0 AAACAAGTGACGGATTTTTAGCCAAGGAGATTGAAAAATAGCATGATTCTTTGTGTCCCA 360 consensus_2#1 GACCTGCGGGCGA-----TCGCCAGCAACTTCTGCTACTTGGAAAATTCAG-GTAT---- 216 * * * ** * **** * * * * * * **** ** * consensus_2#0 GGTCCGAGAGCACTGCCCGCCGCTCCGGCCCCTGAAGCCCCGCGGGGCATGCGGGCAGGA 420 consensus_2#1 GGTGTGAAAGCACCA---GAGGCGATAAACTCTGGGAGCC------ACTAACTGCCTGGG 267 *** ** ***** * ** * *** ** * * * * ** consensus_2#0 ACTGGAACCCCCACTCCTTGCCTTCAGAGCACCCATCCGCTGTGGGATCCCACCAAGGAC 480 consensus_2#1 TTTATAGC----ACAGTGTGTGTTTAAATTCCAAATCGGTGTCACGGTTCTGGTGAAATC 323 * * * ** ** ** * * * *** * * * * * * consensus_2#0 CTGCGGGCGATCGCCAGCAACTTCTGCTACTTGGAAAATTCAGGATGGTACTGGGGGGCC 540 consensus_2#1 C---ACGTGAACTGAGTCCACTCACAGAATTGTGTCTGCGCAGGATGGTACTGGGGGGCC 380 * * ** * * *** * * * ******************** consensus_2#0 ATAACAGCAGCTCAGGCCCACGCTGCGCTGCAAGAGGCTTCCGAAGGGGCGTTTTTGGTA 600 consensus_2#1 ATAACAGCAGCTCAGGCCCACGCTGCGCTGCAAGAGGCTTCCGAAGGGGCGTTTTTGGTA 440 ************************************************************ consensus_2#0 CGTGACAGCAGCCACCCGCTCTACATGCTGACGCTGTCAGTCAGGACCGCCCGCGGG--- 657 consensus_2#1 CGTGACAGCAGCCACCCGCTCTACATGCTGACGCTGTCAGTCAGGACCGCCCGCGGGCCC 500 ********************************************************* consensus_2#0 ------------------------------------------------------------ consensus_2#1 ACCAGCATACGCATCCAGTACAGCAGCGCCCAGTTTCTCCTGGACTCCAGCTCCCCGGCC 560 consensus_2#0 --- consensus_2#1 CGG 563 |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |