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Takifugu rubripes
cluster # 2010 cluster # 2010       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2010#0 length = 781 sequences # 3  
consensus_2010#1 length = 616 sequences # 1  

consensusID : consensus_2010#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 781
fasta sequence
                              [TATAATACCGTTTCCCTGCATTTACCCTGCAGTGCACTTCTCTAATATTGCGCCTAAAAAAATAAGTCACCGGCATCGGGAATGATCTGCCGGGTCACGTGATTGCAGCTTGGTTTTTACGCCAGGTTCCGCTGCAGGCACGCCAGTGTGATTTAGTTTAGGCTCCTGTCTTCTACGTCGCTTTTAAAGCCTCTGCGGGGGAATCTGAAAGATGGCTCGGACACTTTTGCTTGTCCTGTTTTCAGTCTTGGCCTCGGGTGTGTTCGCCGGAACGTTTTTTAAGCAAAACCACGCGTGCTATGTTCCCAAACCCCGGAGCATCGGCTTTGGAGTGAAGTCCTCCCCTCAGCCTCATGAGTATTTAAATGTTTCTGATCTGCCAAAATCTTGGGACTGGAGGAACATCAAGGGTATCAACTACGTCAGCACAACTCGCAACCAGCACATCCCCCAGTACTGTGGCTCCTGTTGGGCTCATGGCAGCACCAGCGCCATGGCAGATCGCATCAACATTAAGCGTAAAGGGGCGTGGCCATCAGCCTATCTCTCGGTGCAGCACGTGATCGACTGTGGTGACGCCGGCTCCTGCCACGGAGGAGATCACAGTGGAGTCTGGGAGTATGCGAATCAACACGGGATCCCTGATGAGACGTGCAATAACTACCAGGCTAAAGACCAGGCTTGCAAGCCCTTCAATGAATGTGGCACCTGCACCACTTTTGGAGTCTGCAACATCGTAAAAAACTACACCCTGTGGAAAGTCGGAGACTATGGACGGGTT]

[+] EMBL BU806464             [TATAATACCGTTTCCCTGCATTTACCCTGCAGTGCACTTCTCTAATATTGCGCCTAAAAAAATAAGTCACCGGCATCGGGAATGATCTGCCGGGTCACGTGATTGCAGCTTGGTTTTTACGCCAGGTTCCGCTGCAGGCACGCCAGTGTGATTTAGTTTAGGCTCCTGTCTTCTACGTCGCTTTTAAAGCCTCTGCGGGGGAATCTGAAAGATGGCTCGGACACTTTTGCTTGTCCTGTTTTCAGTCTTGGCCTCGGGTGTGTTCGCCGGAACGTTTTTTAAGCAAAACCACGCGTGCTATGTTCCCAAACCCCGGAGCATCGGCTTTGGAGTGAAGTCCTCCCCTCAGCCTCATGAGTATTTAAATGTTTCTGATCTGCCAAAATCTTGGGACTGGAGGAACATCAAGGGTATCAACTACGTCAGCACAACTCGCAACCAGCACATCCCCCAGTACTGTGGCTCCTGTTGGGCTCATGGCAGCACCAGCGCCATGGCAGATCGCATCAACATTAAGCGTAAAGGGGCGTGGCCATCAGCCTATCTCTCGGTGCAGCACGTGATCGACTGTGGTGACGCCGGCTCCTGCCACGGAGGAGATCACAGTGGAGTCTGGGAGTATGCGAAT                                                                                                                                                         ]
[+] EMBL CA591145             [                                                                                                                                                               AGGCTCCTGTCTTCTACGTCGCTTTTAAAGCCTCTGCGGGGGAATCTGAAAGATGGCTCGGACACTTTTGCTTGTCCTGTTTTCAGTCTTGGCCTCGGGTGTGTTCGCCGGAACGTTTTTTAAGCAAAACCACGCGTGCTATGTTCCCAAACCCCGGAGCATCGGCTTTGGAGTGAAGTCCTCCCCTCAGCCTCATGAGTATTTAAATGTTTCTGATCTGCCAAAATCTTGGGACTGGAGGAACATCAAGGGTATCAACTACGTCAGCACAACTCGCAACCAGCACATCCCCCAGTACTGTGGCTCCTGTTGGGCTCATGGCAGCACCAGCGCCATGGCAGATCGCATCAACATTAAGCGTAAAGGGGCGTGGCCATCAGCCTATCTCTCAGTGCAGCACGTGATCGACTGTGGTGACGCCGGCTCCTGCCACGGAGGAGATCACAGTGGAGTCTGGGAGTATGCGAATCAACACGGGATCCCTGATGAGACGTGCAATAACTACCAGGCTAAAGACCAGGCTTGCAAGCCCTTCAATGAATGTGGCACCTGCACCACTTTTGGAGTCTGCAACATCGTAAAAAACTACACCCTGTGGAAAGTCGGAGACTATGGACGGGTT]
[+] EMBL FR0061139            [                                                                                                                                                                                                                          GGACACTTTTGCTTGTCCTGTTTTCAGTCTTGGCCTCGGGTGTGTTCGCCGGAACGTTTTTTAAGCAAAACCACGCGTGCTATGTTCCCAAACCCCGGAGCATCGGCTTTGGAGTGAAGTCCTCCCCTCAGCCTCATGAGTATTTAAATGTTTCTGATCTGCCAAAATCTTGGGACTGGAGGAACATCAAGGGTATCAACTACGTCAGCACAACTCGCAACCAGCACATCCCCCAGTACTGTGGCTCCTGTTGGGCTCATGGCAGCACCAGCGCCATGGCA                                                                                                                                                                                                                                                                                          ]


>consensus_2010#0 TATAATACCGTTTCCCTGCATTTACCCTGCAGTGCACTTCTCTAATATTGCGCCTAAAAA AATAAGTCACCGGCATCGGGAATGATCTGCCGGGTCACGTGATTGCAGCTTGGTTTTTAC GCCAGGTTCCGCTGCAGGCACGCCAGTGTGATTTAGTTTAGGCTCCTGTCTTCTACGTCG CTTTTAAAGCCTCTGCGGGGGAATCTGAAAGATGGCTCGGACACTTTTGCTTGTCCTGTT TTCAGTCTTGGCCTCGGGTGTGTTCGCCGGAACGTTTTTTAAGCAAAACCACGCGTGCTA TGTTCCCAAACCCCGGAGCATCGGCTTTGGAGTGAAGTCCTCCCCTCAGCCTCATGAGTA TTTAAATGTTTCTGATCTGCCAAAATCTTGGGACTGGAGGAACATCAAGGGTATCAACTA CGTCAGCACAACTCGCAACCAGCACATCCCCCAGTACTGTGGCTCCTGTTGGGCTCATGG CAGCACCAGCGCCATGGCAGATCGCATCAACATTAAGCGTAAAGGGGCGTGGCCATCAGC CTATCTCTCGGTGCAGCACGTGATCGACTGTGGTGACGCCGGCTCCTGCCACGGAGGAGA TCACAGTGGAGTCTGGGAGTATGCGAATCAACACGGGATCCCTGATGAGACGTGCAATAA CTACCAGGCTAAAGACCAGGCTTGCAAGCCCTTCAATGAATGTGGCACCTGCACCACTTT TGGAGTCTGCAACATCGTAAAAAACTACACCCTGTGGAAAGTCGGAGACTATGGACGGGT T



consensusID : consensus_2010#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 616
fasta sequence
                              [GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTCGTGCCGAATTCGGCACGAGACGCCAGTGTGATTTAGTTTAGGCTCCTGTCTTCTACGTCGCTTTTAAAGCCTCTGTGTGGGAATCTGAAAGATGGCTCGGACACTTCTGCTTGTCCTGTTTTCAGTCTTGGCCTCGGGTGTGTTCGCCGGAACGTTTTTTAAGCAAAACCACGCGTGCTATGTTCCCACACCCCGGAGCATCGGCTTTGGAGTGAAGTCCTCCCCTCAGCCTCATGAGTATTTAAATGTTTCTGATCTGCCAAAATCTTGGGACTGGAGGAACATCAAGGGTATCAACTACGTCAGCACAACTCGCAACCAGCACATCCCCCAGTACTGTGGCTCCTGTTGGGCTCATGGCAGCACCAGCGCCATGGCAGATCGCATCAACATTAAGCGTAGAGGGGCGTGGCCATCAGCCTATCTCTCGGTGCAGCACGTGATCGACTGTGGT]

[+] EMBL CA330823             [GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTCGTGCCGAATTCGGCACGAGACGCCAGTGTGATTTAGTTTAGGCTCCTGTCTTCTACGTCGCTTTTAAAGCCTCTGTGTGGGAATCTGAAAGATGGCTCGGACACTTCTGCTTGTCCTGTTTTCAGTCTTGGCCTCGGGTGTGTTCGCCGGAACGTTTTTTAAGCAAAACCACGCGTGCTATGTTCCCACACCCCGGAGCATCGGCTTTGGAGTGAAGTCCTCCCCTCAGCCTCATGAGTATTTAAATGTTTCTGATCTGCCAAAATCTTGGGACTGGAGGAACATCAAGGGTATCAACTACGTCAGCACAACTCGCAACCAGCACATCCCCCAGTACTGTGGCTCCTGTTGGGCTCATGGCAGCACCAGCGCCATGGCAGATCGCATCAACATTAAGCGTAGAGGGGCGTGGCCATCAGCCTATCTCTCGGTGCAGCACGTGATCGACTGTGGT]


>consensus_2010#1 GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTCGTGCCGAATTCGGCACGA GACGCCAGTGTGATTTAGTTTAGGCTCCTGTCTTCTACGTCGCTTTTAAAGCCTCTGTGT GGGAATCTGAAAGATGGCTCGGACACTTCTGCTTGTCCTGTTTTCAGTCTTGGCCTCGGG TGTGTTCGCCGGAACGTTTTTTAAGCAAAACCACGCGTGCTATGTTCCCACACCCCGGAG CATCGGCTTTGGAGTGAAGTCCTCCCCTCAGCCTCATGAGTATTTAAATGTTTCTGATCT GCCAAAATCTTGGGACTGGAGGAACATCAAGGGTATCAACTACGTCAGCACAACTCGCAA CCAGCACATCCCCCAGTACTGTGGCTCCTGTTGGGCTCATGGCAGCACCAGCGCCATGGC AGATCGCATCAACATTAAGCGTAGAGGGGCGTGGCCATCAGCCTATCTCTCGGTGCAGCA CGTGATCGACTGTGGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2010#0      ---------------------------------------------TATAATACCGTTTCC 15
consensus_2010#1      GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA 60
                                                                       * *  *     

consensus_2010#0      CTGCATTTACCCTGCAGTGCACTTCTCTAATATTGCGCCTAAAAAAATAAGTCACCGGCA 75
consensus_2010#1      GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA 120
                        *            ** *          * *  * *    * * *   **  *  *  *

consensus_2010#0      TCGGGAATGATCTGCCGGGTCACGTGATTGCAGCTTGGTTTTTACGCCAGGTTCCGCTGC 135
consensus_2010#1      GAGAGAGAGAGAGAGAGAGAGA-GAGAGAGAGAGAGAGAGCTCGTGCCGAATTCGGCACG 179
                        * **  **      * *  * * **  *       *   *   ***   *** **   

consensus_2010#0      AGGCACGCCAGTGTGATTTAGTTTAGGCTCCTGTCTTCTACGTCGCTTTTAAAGCCTCTG 195
consensus_2010#1      AG--ACGCCAGTGTGATTTAGTTTAGGCTCCTGTCTTCTACGTCGCTTTTAAAGCCTCTG 237
                      **  ********************************************************

consensus_2010#0      CGGGGGAATCTGAAAGATGGCTCGGACACTTTTGCTTGTCCTGTTTTCAGTCTTGGCCTC 255
consensus_2010#1      TGTGGGAATCTGAAAGATGGCTCGGACACTTCTGCTTGTCCTGTTTTCAGTCTTGGCCTC 297
                       * **************************** ****************************

consensus_2010#0      GGGTGTGTTCGCCGGAACGTTTTTTAAGCAAAACCACGCGTGCTATGTTCCCAAACCCCG 315
consensus_2010#1      GGGTGTGTTCGCCGGAACGTTTTTTAAGCAAAACCACGCGTGCTATGTTCCCACACCCCG 357
                      ***************************************************** ******

consensus_2010#0      GAGCATCGGCTTTGGAGTGAAGTCCTCCCCTCAGCCTCATGAGTATTTAAATGTTTCTGA 375
consensus_2010#1      GAGCATCGGCTTTGGAGTGAAGTCCTCCCCTCAGCCTCATGAGTATTTAAATGTTTCTGA 417
                      ************************************************************

consensus_2010#0      TCTGCCAAAATCTTGGGACTGGAGGAACATCAAGGGTATCAACTACGTCAGCACAACTCG 435
consensus_2010#1      TCTGCCAAAATCTTGGGACTGGAGGAACATCAAGGGTATCAACTACGTCAGCACAACTCG 477
                      ************************************************************

consensus_2010#0      CAACCAGCACATCCCCCAGTACTGTGGCTCCTGTTGGGCTCATGGCAGCACCAGCGCCAT 495
consensus_2010#1      CAACCAGCACATCCCCCAGTACTGTGGCTCCTGTTGGGCTCATGGCAGCACCAGCGCCAT 537
                      ************************************************************

consensus_2010#0      GGCAGATCGCATCAACATTAAGCGTAAAGGGGCGTGGCCATCAGCCTATCTCTCGGTGCA 555
consensus_2010#1      GGCAGATCGCATCAACATTAAGCGTAGAGGGGCGTGGCCATCAGCCTATCTCTCGGTGCA 597
                      ************************** *********************************

consensus_2010#0      GCACGTGATCGACTGTGGTGACGCCGGCTCCTGCCACGGAGGAGATCACAGTGGAGTCTG 615
consensus_2010#1      GCACGTGATCGACTGTGGT----------------------------------------- 616
                      *******************                                         

consensus_2010#0      GGAGTATGCGAATCAACACGGGATCCCTGATGAGACGTGCAATAACTACCAGGCTAAAGA 675
consensus_2010#1      ------------------------------------------------------------
                                                                                  

consensus_2010#0      CCAGGCTTGCAAGCCCTTCAATGAATGTGGCACCTGCACCACTTTTGGAGTCTGCAACAT 735
consensus_2010#1      ------------------------------------------------------------
                                                                                  

consensus_2010#0      CGTAAAAAACTACACCCTGTGGAAAGTCGGAGACTATGGACGGGTT 781
consensus_2010#1      ----------------------------------------------
                                                                    




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)