These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2010#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 781 fasta sequence [TATAATACCGTTTCCCTGCATTTACCCTGCAGTGCACTTCTCTAATATTGCGCCTAAAAAAATAAGTCACCGGCATCGGGAATGATCTGCCGGGTCACGTGATTGCAGCTTGGTTTTTACGCCAGGTTCCGCTGCAGGCACGCCAGTGTGATTTAGTTTAGGCTCCTGTCTTCTACGTCGCTTTTAAAGCCTCTGCGGGGGAATCTGAAAGATGGCTCGGACACTTTTGCTTGTCCTGTTTTCAGTCTTGGCCTCGGGTGTGTTCGCCGGAACGTTTTTTAAGCAAAACCACGCGTGCTATGTTCCCAAACCCCGGAGCATCGGCTTTGGAGTGAAGTCCTCCCCTCAGCCTCATGAGTATTTAAATGTTTCTGATCTGCCAAAATCTTGGGACTGGAGGAACATCAAGGGTATCAACTACGTCAGCACAACTCGCAACCAGCACATCCCCCAGTACTGTGGCTCCTGTTGGGCTCATGGCAGCACCAGCGCCATGGCAGATCGCATCAACATTAAGCGTAAAGGGGCGTGGCCATCAGCCTATCTCTCGGTGCAGCACGTGATCGACTGTGGTGACGCCGGCTCCTGCCACGGAGGAGATCACAGTGGAGTCTGGGAGTATGCGAATCAACACGGGATCCCTGATGAGACGTGCAATAACTACCAGGCTAAAGACCAGGCTTGCAAGCCCTTCAATGAATGTGGCACCTGCACCACTTTTGGAGTCTGCAACATCGTAAAAAACTACACCCTGTGGAAAGTCGGAGACTATGGACGGGTT] [+] EMBL BU806464 [TATAATACCGTTTCCCTGCATTTACCCTGCAGTGCACTTCTCTAATATTGCGCCTAAAAAAATAAGTCACCGGCATCGGGAATGATCTGCCGGGTCACGTGATTGCAGCTTGGTTTTTACGCCAGGTTCCGCTGCAGGCACGCCAGTGTGATTTAGTTTAGGCTCCTGTCTTCTACGTCGCTTTTAAAGCCTCTGCGGGGGAATCTGAAAGATGGCTCGGACACTTTTGCTTGTCCTGTTTTCAGTCTTGGCCTCGGGTGTGTTCGCCGGAACGTTTTTTAAGCAAAACCACGCGTGCTATGTTCCCAAACCCCGGAGCATCGGCTTTGGAGTGAAGTCCTCCCCTCAGCCTCATGAGTATTTAAATGTTTCTGATCTGCCAAAATCTTGGGACTGGAGGAACATCAAGGGTATCAACTACGTCAGCACAACTCGCAACCAGCACATCCCCCAGTACTGTGGCTCCTGTTGGGCTCATGGCAGCACCAGCGCCATGGCAGATCGCATCAACATTAAGCGTAAAGGGGCGTGGCCATCAGCCTATCTCTCGGTGCAGCACGTGATCGACTGTGGTGACGCCGGCTCCTGCCACGGAGGAGATCACAGTGGAGTCTGGGAGTATGCGAAT ] [+] EMBL CA591145 [ AGGCTCCTGTCTTCTACGTCGCTTTTAAAGCCTCTGCGGGGGAATCTGAAAGATGGCTCGGACACTTTTGCTTGTCCTGTTTTCAGTCTTGGCCTCGGGTGTGTTCGCCGGAACGTTTTTTAAGCAAAACCACGCGTGCTATGTTCCCAAACCCCGGAGCATCGGCTTTGGAGTGAAGTCCTCCCCTCAGCCTCATGAGTATTTAAATGTTTCTGATCTGCCAAAATCTTGGGACTGGAGGAACATCAAGGGTATCAACTACGTCAGCACAACTCGCAACCAGCACATCCCCCAGTACTGTGGCTCCTGTTGGGCTCATGGCAGCACCAGCGCCATGGCAGATCGCATCAACATTAAGCGTAAAGGGGCGTGGCCATCAGCCTATCTCTCAGTGCAGCACGTGATCGACTGTGGTGACGCCGGCTCCTGCCACGGAGGAGATCACAGTGGAGTCTGGGAGTATGCGAATCAACACGGGATCCCTGATGAGACGTGCAATAACTACCAGGCTAAAGACCAGGCTTGCAAGCCCTTCAATGAATGTGGCACCTGCACCACTTTTGGAGTCTGCAACATCGTAAAAAACTACACCCTGTGGAAAGTCGGAGACTATGGACGGGTT] [+] EMBL FR0061139 [ GGACACTTTTGCTTGTCCTGTTTTCAGTCTTGGCCTCGGGTGTGTTCGCCGGAACGTTTTTTAAGCAAAACCACGCGTGCTATGTTCCCAAACCCCGGAGCATCGGCTTTGGAGTGAAGTCCTCCCCTCAGCCTCATGAGTATTTAAATGTTTCTGATCTGCCAAAATCTTGGGACTGGAGGAACATCAAGGGTATCAACTACGTCAGCACAACTCGCAACCAGCACATCCCCCAGTACTGTGGCTCCTGTTGGGCTCATGGCAGCACCAGCGCCATGGCA ] consensusID : consensus_2010#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 616 fasta sequence [GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTCGTGCCGAATTCGGCACGAGACGCCAGTGTGATTTAGTTTAGGCTCCTGTCTTCTACGTCGCTTTTAAAGCCTCTGTGTGGGAATCTGAAAGATGGCTCGGACACTTCTGCTTGTCCTGTTTTCAGTCTTGGCCTCGGGTGTGTTCGCCGGAACGTTTTTTAAGCAAAACCACGCGTGCTATGTTCCCACACCCCGGAGCATCGGCTTTGGAGTGAAGTCCTCCCCTCAGCCTCATGAGTATTTAAATGTTTCTGATCTGCCAAAATCTTGGGACTGGAGGAACATCAAGGGTATCAACTACGTCAGCACAACTCGCAACCAGCACATCCCCCAGTACTGTGGCTCCTGTTGGGCTCATGGCAGCACCAGCGCCATGGCAGATCGCATCAACATTAAGCGTAGAGGGGCGTGGCCATCAGCCTATCTCTCGGTGCAGCACGTGATCGACTGTGGT] [+] EMBL CA330823 [GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTCGTGCCGAATTCGGCACGAGACGCCAGTGTGATTTAGTTTAGGCTCCTGTCTTCTACGTCGCTTTTAAAGCCTCTGTGTGGGAATCTGAAAGATGGCTCGGACACTTCTGCTTGTCCTGTTTTCAGTCTTGGCCTCGGGTGTGTTCGCCGGAACGTTTTTTAAGCAAAACCACGCGTGCTATGTTCCCACACCCCGGAGCATCGGCTTTGGAGTGAAGTCCTCCCCTCAGCCTCATGAGTATTTAAATGTTTCTGATCTGCCAAAATCTTGGGACTGGAGGAACATCAAGGGTATCAACTACGTCAGCACAACTCGCAACCAGCACATCCCCCAGTACTGTGGCTCCTGTTGGGCTCATGGCAGCACCAGCGCCATGGCAGATCGCATCAACATTAAGCGTAGAGGGGCGTGGCCATCAGCCTATCTCTCGGTGCAGCACGTGATCGACTGTGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2010#0 ---------------------------------------------TATAATACCGTTTCC 15 consensus_2010#1 GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA 60 * * * consensus_2010#0 CTGCATTTACCCTGCAGTGCACTTCTCTAATATTGCGCCTAAAAAAATAAGTCACCGGCA 75 consensus_2010#1 GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA 120 * ** * * * * * * * * ** * * * consensus_2010#0 TCGGGAATGATCTGCCGGGTCACGTGATTGCAGCTTGGTTTTTACGCCAGGTTCCGCTGC 135 consensus_2010#1 GAGAGAGAGAGAGAGAGAGAGA-GAGAGAGAGAGAGAGAGCTCGTGCCGAATTCGGCACG 179 * ** ** * * * * ** * * * *** *** ** consensus_2010#0 AGGCACGCCAGTGTGATTTAGTTTAGGCTCCTGTCTTCTACGTCGCTTTTAAAGCCTCTG 195 consensus_2010#1 AG--ACGCCAGTGTGATTTAGTTTAGGCTCCTGTCTTCTACGTCGCTTTTAAAGCCTCTG 237 ** ******************************************************** consensus_2010#0 CGGGGGAATCTGAAAGATGGCTCGGACACTTTTGCTTGTCCTGTTTTCAGTCTTGGCCTC 255 consensus_2010#1 TGTGGGAATCTGAAAGATGGCTCGGACACTTCTGCTTGTCCTGTTTTCAGTCTTGGCCTC 297 * **************************** **************************** consensus_2010#0 GGGTGTGTTCGCCGGAACGTTTTTTAAGCAAAACCACGCGTGCTATGTTCCCAAACCCCG 315 consensus_2010#1 GGGTGTGTTCGCCGGAACGTTTTTTAAGCAAAACCACGCGTGCTATGTTCCCACACCCCG 357 ***************************************************** ****** consensus_2010#0 GAGCATCGGCTTTGGAGTGAAGTCCTCCCCTCAGCCTCATGAGTATTTAAATGTTTCTGA 375 consensus_2010#1 GAGCATCGGCTTTGGAGTGAAGTCCTCCCCTCAGCCTCATGAGTATTTAAATGTTTCTGA 417 ************************************************************ consensus_2010#0 TCTGCCAAAATCTTGGGACTGGAGGAACATCAAGGGTATCAACTACGTCAGCACAACTCG 435 consensus_2010#1 TCTGCCAAAATCTTGGGACTGGAGGAACATCAAGGGTATCAACTACGTCAGCACAACTCG 477 ************************************************************ consensus_2010#0 CAACCAGCACATCCCCCAGTACTGTGGCTCCTGTTGGGCTCATGGCAGCACCAGCGCCAT 495 consensus_2010#1 CAACCAGCACATCCCCCAGTACTGTGGCTCCTGTTGGGCTCATGGCAGCACCAGCGCCAT 537 ************************************************************ consensus_2010#0 GGCAGATCGCATCAACATTAAGCGTAAAGGGGCGTGGCCATCAGCCTATCTCTCGGTGCA 555 consensus_2010#1 GGCAGATCGCATCAACATTAAGCGTAGAGGGGCGTGGCCATCAGCCTATCTCTCGGTGCA 597 ************************** ********************************* consensus_2010#0 GCACGTGATCGACTGTGGTGACGCCGGCTCCTGCCACGGAGGAGATCACAGTGGAGTCTG 615 consensus_2010#1 GCACGTGATCGACTGTGGT----------------------------------------- 616 ******************* consensus_2010#0 GGAGTATGCGAATCAACACGGGATCCCTGATGAGACGTGCAATAACTACCAGGCTAAAGA 675 consensus_2010#1 ------------------------------------------------------------ consensus_2010#0 CCAGGCTTGCAAGCCCTTCAATGAATGTGGCACCTGCACCACTTTTGGAGTCTGCAACAT 735 consensus_2010#1 ------------------------------------------------------------ consensus_2010#0 CGTAAAAAACTACACCCTGTGGAAAGTCGGAGACTATGGACGGGTT 781 consensus_2010#1 ---------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |