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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2013#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 834 fasta sequence
[AGGGTGTATTTTTTTTATATTTTGTAAACAGGGGAGCACTATTTGGCCAGCAAAATGACAGATAAACTGGATATGTCCTTAGACGACATTATCAAGCAGAACAGGCAGCAGAGAGGTGGAGGCCGGGGAGGAAGAGGCCGAGGCCGCGGCATCTCAGGCCGCGGCGGAGGAGTTGGGCGTCTCGGAGGTGGCGGCGGAGGATTTGGAAACCGAGGCGGCGGATCCGGCCCCATGAGGAACCGACAAAACCTGAACCGCGGTAGAGGCAGACCGACGCCTTACAGCAGGCCCAAACAGCTTCCCGACAAATGGCAGCACGACATGTTTGACAATGGCTTCAGTGGATTCAACGGCGTTGCCAGTGGCGGAGGAGCCGGTGTGGAAACTGGAGGGAAGCTCCTCGTCTCCAATCTAGACTTCGGCGTCTCGGATGCAGATATTCAGGAACTCTTTGCTGAATTTGGAATTCTAAAAAAGGCCGCTGTTCACTACGATCGGTCGGGGAGAAGCCTCGGAACAGCAGATGTTCACTTTGAAAGGAGAGCAGATGCCCTCAAGGCCATGAAACAGTACAACGGCATCCCACTTGATGGGCGGCCTATGAACATACAGCTCGTCACATCACAGATCGACACACAGCGGCGACCCATGCAGGGTAGAGGCGGTGGAACCATGAACAGAATTCGTGGAGGCGGCTTTGGGGGCATGCAGAAAACCCGTGGGATGCGCGGCGCCGGCGGTTCCAGGGGAAGGGGTCGAGGTGGTCGAGGAGGGGGCAGCAAACAGCCGCTTTCAGCAGAAGAACTCGACGCTCAGTTAGATGCCTACAATGCA]
[+] EMBL FR0058134 [AGGGTGTATTTTTTTTATATTTTGTAAACAGTTTAGCACTATTTGGCCAGCAAAATGACAGATAAACTGGATATGTCCTTAGACGACATTATCAAGCAGAACAGGCAGCAGAGAGGTGGAGGCCGGGGAGGAAGAGGCCGAGGCCGCGGCATCTCAGGCCGCGGCGGAGGTGTTGGGCGTCTCGGAGGTGGCGGCGGAGGATTTGGAAACCGAGGCGGCGGATCCGGCCCCATGAGGAACCGACAAAACCTGAACCGCGGTAGAGGCAGACCGACGCCTTACAGCAGGCCCAAACAGCTTCCCGACAAATGGCAGCACGACATGTTTGACAATGGCTTCAGTGGATTCAACGGCGT ]
[+] EMBL FR0062322 [ AGGGGAGCACTATTTGGCCAGCAAAATGACAGATAAACTGGATATGTCCTTAGACGACATTATCAAGCAGAACAGGCAGCAGAGAGGTGGAGGCCGGGGAGGAAGAGGCCGAGGCCGCGGCATCTCAGGCCGCGGCGGAGGAGTTGGGCGTCTCGGAGGTGGCGGCGGAGGATTTGGAAACCGAGGCGGCGGATCCGGCCCCATGAGGAACCGACAAAACCTGAACCGCGGTAGAGGCAGACCGACGCCTTACAGCAGGCCCAAACAGCTTCCCGACAAATGGCAGCACGACATGGTTGACAATGGCTTCAGTG ]
[+] EMBL CA845360 [ CCTGAACCGCGGTAGAGGCAGACCGACGCCTTACAGCAGGCCCAAACAGCTTCCCGACAAATGGCAGCACGACATGTTTGACAATGGCTTCAGTGGATTCAACGGCGTTGCCAGTGGCGGAGGAGCCGGTGTGGAAACTGGAGGGAAGCTCCTCGTCTCCAATCTAGACTTCGGCGTCTCGGATGCAGATATTCAGGAACTCTTTGCTGAATTTGGAATTCTAAAAAAGGCCGCTGTTCACTACGATCGGTCGGGGAGAAGCCTCGGAACAGCAGATGTTCACTTTGAAAGGAGAGCAGATGCCCTCAAGGCCATGAAACAGTACAACGGCATCCCACTTGATGGGCGGCCTATGAACATACAGCTCGTCACATCACAGATCGACACACAGCGGCGACCCATGCAGGGTAGAGGCGGTGGAACCATGAACAGAATTCGTGGAGGCGGCTTTGGGGGCATGCAGAAAACCCGTGGGATGCGCGGCGCCGGCGGTTCCAGGGGAAGGGGTCGAGGTGGTCGAGGAGGGGGCAGCAAACAGCCGCTTTCAGCAGAAGAACTCGACGCTCAGTTAGATGCCTACAATGCA]
consensusID : consensus_2013#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 476 fasta sequence
[CAAGGAGCGCTGTTCTGTGTCAGGGACCAATCAAGGCCATGGTGTATTTTTTTTATATTTTGTAAACAGTTTAGCACTATTTGGCCAGCAAAATGACAGATAAACTGGATATGTCCTTAGACGACATTATCAAGCAGAACAGGCAGCAGAGAGGTGGAGGCCGGGGAGGAAGAGGCCGAGGCCGCGGCATCTCAGGCCGCGGCGGAGGTGTTGGGCGTCTCGGAGGTGGCGACGGAGGATTTGGAAACCGAGGCGGCGGATCCGGCCCCATGAGGAACCGACAAAACCTGAACCGCGGTAGAGGCAGACCGACGCCTTACAGCAGGGTATGAGAAAATTAAAGGAATGGGCAGGAAAAACGGAAAAGCCTTCGGCAAACCTGAAAGTGCCTGGGTTTCATCATTCTGTTCTCAGCTAGGCTTGCTAGCTAACCACCTAACCAGTGAGCTAGTCAAGCAAATAAAATGATTGCTATA]
[+] EMBL CA591525 [CAAGGAGCGCTGTTCTGTGTCAGGGACCAATCAAGGCCATGGTGTATTTTTTTTATATTTTGTAAACAGTTTAGCACTATTTGGCCAGCAAAATGACAGATAAACTGGATATGTCCTTAGACGACATTATCAAGCAGAACAGGCAGCAGAGAGGTGGAGGCCGGGGAGGAAGAGGCCGAGGCCGCGGCATCTCAGGCCGCGGCGGAGGTGTTGGGCGTCTCGGAGGTGGCGACGGAGGATTTGGAAACCGAGGCGGCGGATCCGGCCCCATGAGGAACCGACAAAACCTGAACCGCGGTAGAGGCAGACCGACGCCTTACAGCAGGGTATGAGAAAATTAAAGGAATGGGCAGGAAAAACGGAAAAGCCTTCGGCAAACCTGAAAGTGCCTGGGTTTCATCATTCTGTTCTCAGCTAGGCTTGCTAGCTAACCACCTAACCAGTGAGCTAGTCAAGCAAATAAAATGATTGCTATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2013#0 --------------------------------------AGGGTGTATTTTTTTTATATTT 22
consensus_2013#1 CAAGGAGCGCTGTTCTGTGTCAGGGACCAATCAAGGCCATGGTGTATTTTTTTTATATTT 60
* ********************
consensus_2013#0 TGTAAACAGGGGAGCACTATTTGGCCAGCAAAATGACAGATAAACTGGATATGTCCTTAG 82
consensus_2013#1 TGTAAACAGTTTAGCACTATTTGGCCAGCAAAATGACAGATAAACTGGATATGTCCTTAG 120
********* ************************************************
consensus_2013#0 ACGACATTATCAAGCAGAACAGGCAGCAGAGAGGTGGAGGCCGGGGAGGAAGAGGCCGAG 142
consensus_2013#1 ACGACATTATCAAGCAGAACAGGCAGCAGAGAGGTGGAGGCCGGGGAGGAAGAGGCCGAG 180
************************************************************
consensus_2013#0 GCCGCGGCATCTCAGGCCGCGGCGGAGGAGTTGGGCGTCTCGGAGGTGGCGGCGGAGGAT 202
consensus_2013#1 GCCGCGGCATCTCAGGCCGCGGCGGAGGTGTTGGGCGTCTCGGAGGTGGCGACGGAGGAT 240
**************************** ********************** ********
consensus_2013#0 TTGGAAACCGAGGCGGCGGATCCGGCCCCATGAGGAACCGACAAAACCTGAACCGCGGTA 262
consensus_2013#1 TTGGAAACCGAGGCGGCGGATCCGGCCCCATGAGGAACCGACAAAACCTGAACCGCGGTA 300
************************************************************
consensus_2013#0 GAGGCAGACCGACGCCTTACAGCAGGCCCAAACAGCTTCCCGACAAATGGCAGCACGACA 322
consensus_2013#1 GAGGCAGACCGACGCCTTACAGCAGGGTATGAGAAAATTAAAGGAATGGGCAGGAAAA-- 358
************************** * * * ** ***** * *
consensus_2013#0 TGTTTGACAATGGCTTCAGTGGATTCAACGGCGTTGCCAGTGGCGGAGGAGCCGGTGTGG 382
consensus_2013#1 ---ACGGAAAAGCCTTCGGCAAACCTGAAAG---TGCCTGGGTTTCATCATTCTGT-TCT 411
* ** * **** * * * * **** * * * * * ** *
consensus_2013#0 AAACTGGAGGGAAGCTCCTCGTCTCCAATCTAGACTTCGGCGTCTCGGATGCAGATATTC 442
consensus_2013#1 CAGCTAGGC-----TTGCTAGCTAACCACCTA-ACCAGTGAGCTAGTCAAGCAAATA--- 462
* ** * * ** * * * *** ** * * * *** ***
consensus_2013#0 AGGAACTCTTTGCTGAATTTGGAATTCTAAAAAAGGCCGCTGTTCACTACGATCGGTCGG 502
consensus_2013#1 ---AAATGATTGCTATA------------------------------------------- 476
** * ***** *
consensus_2013#0 GGAGAAGCCTCGGAACAGCAGATGTTCACTTTGAAAGGAGAGCAGATGCCCTCAAGGCCA 562
consensus_2013#1 ------------------------------------------------------------
consensus_2013#0 TGAAACAGTACAACGGCATCCCACTTGATGGGCGGCCTATGAACATACAGCTCGTCACAT 622
consensus_2013#1 ------------------------------------------------------------
consensus_2013#0 CACAGATCGACACACAGCGGCGACCCATGCAGGGTAGAGGCGGTGGAACCATGAACAGAA 682
consensus_2013#1 ------------------------------------------------------------
consensus_2013#0 TTCGTGGAGGCGGCTTTGGGGGCATGCAGAAAACCCGTGGGATGCGCGGCGCCGGCGGTT 742
consensus_2013#1 ------------------------------------------------------------
consensus_2013#0 CCAGGGGAAGGGGTCGAGGTGGTCGAGGAGGGGGCAGCAAACAGCCGCTTTCAGCAGAAG 802
consensus_2013#1 ------------------------------------------------------------
consensus_2013#0 AACTCGACGCTCAGTTAGATGCCTACAATGCA 834
consensus_2013#1 --------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |