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Takifugu rubripes
cluster # 2013 cluster # 2013       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2013#0 length = 834 sequences # 3  
consensus_2013#1 length = 476 sequences # 1  

consensusID : consensus_2013#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 834
fasta sequence
                              [AGGGTGTATTTTTTTTATATTTTGTAAACAGGGGAGCACTATTTGGCCAGCAAAATGACAGATAAACTGGATATGTCCTTAGACGACATTATCAAGCAGAACAGGCAGCAGAGAGGTGGAGGCCGGGGAGGAAGAGGCCGAGGCCGCGGCATCTCAGGCCGCGGCGGAGGAGTTGGGCGTCTCGGAGGTGGCGGCGGAGGATTTGGAAACCGAGGCGGCGGATCCGGCCCCATGAGGAACCGACAAAACCTGAACCGCGGTAGAGGCAGACCGACGCCTTACAGCAGGCCCAAACAGCTTCCCGACAAATGGCAGCACGACATGTTTGACAATGGCTTCAGTGGATTCAACGGCGTTGCCAGTGGCGGAGGAGCCGGTGTGGAAACTGGAGGGAAGCTCCTCGTCTCCAATCTAGACTTCGGCGTCTCGGATGCAGATATTCAGGAACTCTTTGCTGAATTTGGAATTCTAAAAAAGGCCGCTGTTCACTACGATCGGTCGGGGAGAAGCCTCGGAACAGCAGATGTTCACTTTGAAAGGAGAGCAGATGCCCTCAAGGCCATGAAACAGTACAACGGCATCCCACTTGATGGGCGGCCTATGAACATACAGCTCGTCACATCACAGATCGACACACAGCGGCGACCCATGCAGGGTAGAGGCGGTGGAACCATGAACAGAATTCGTGGAGGCGGCTTTGGGGGCATGCAGAAAACCCGTGGGATGCGCGGCGCCGGCGGTTCCAGGGGAAGGGGTCGAGGTGGTCGAGGAGGGGGCAGCAAACAGCCGCTTTCAGCAGAAGAACTCGACGCTCAGTTAGATGCCTACAATGCA]

[+] EMBL FR0058134            [AGGGTGTATTTTTTTTATATTTTGTAAACAGTTTAGCACTATTTGGCCAGCAAAATGACAGATAAACTGGATATGTCCTTAGACGACATTATCAAGCAGAACAGGCAGCAGAGAGGTGGAGGCCGGGGAGGAAGAGGCCGAGGCCGCGGCATCTCAGGCCGCGGCGGAGGTGTTGGGCGTCTCGGAGGTGGCGGCGGAGGATTTGGAAACCGAGGCGGCGGATCCGGCCCCATGAGGAACCGACAAAACCTGAACCGCGGTAGAGGCAGACCGACGCCTTACAGCAGGCCCAAACAGCTTCCCGACAAATGGCAGCACGACATGTTTGACAATGGCTTCAGTGGATTCAACGGCGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL FR0062322            [                             AGGGGAGCACTATTTGGCCAGCAAAATGACAGATAAACTGGATATGTCCTTAGACGACATTATCAAGCAGAACAGGCAGCAGAGAGGTGGAGGCCGGGGAGGAAGAGGCCGAGGCCGCGGCATCTCAGGCCGCGGCGGAGGAGTTGGGCGTCTCGGAGGTGGCGGCGGAGGATTTGGAAACCGAGGCGGCGGATCCGGCCCCATGAGGAACCGACAAAACCTGAACCGCGGTAGAGGCAGACCGACGCCTTACAGCAGGCCCAAACAGCTTCCCGACAAATGGCAGCACGACATGGTTGACAATGGCTTCAGTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CA845360             [                                                                                                                                                                                                                                                        CCTGAACCGCGGTAGAGGCAGACCGACGCCTTACAGCAGGCCCAAACAGCTTCCCGACAAATGGCAGCACGACATGTTTGACAATGGCTTCAGTGGATTCAACGGCGTTGCCAGTGGCGGAGGAGCCGGTGTGGAAACTGGAGGGAAGCTCCTCGTCTCCAATCTAGACTTCGGCGTCTCGGATGCAGATATTCAGGAACTCTTTGCTGAATTTGGAATTCTAAAAAAGGCCGCTGTTCACTACGATCGGTCGGGGAGAAGCCTCGGAACAGCAGATGTTCACTTTGAAAGGAGAGCAGATGCCCTCAAGGCCATGAAACAGTACAACGGCATCCCACTTGATGGGCGGCCTATGAACATACAGCTCGTCACATCACAGATCGACACACAGCGGCGACCCATGCAGGGTAGAGGCGGTGGAACCATGAACAGAATTCGTGGAGGCGGCTTTGGGGGCATGCAGAAAACCCGTGGGATGCGCGGCGCCGGCGGTTCCAGGGGAAGGGGTCGAGGTGGTCGAGGAGGGGGCAGCAAACAGCCGCTTTCAGCAGAAGAACTCGACGCTCAGTTAGATGCCTACAATGCA]


>consensus_2013#0 AGGGTGTATTTTTTTTATATTTTGTAAACAGGGGAGCACTATTTGGCCAGCAAAATGACA GATAAACTGGATATGTCCTTAGACGACATTATCAAGCAGAACAGGCAGCAGAGAGGTGGA GGCCGGGGAGGAAGAGGCCGAGGCCGCGGCATCTCAGGCCGCGGCGGAGGAGTTGGGCGT CTCGGAGGTGGCGGCGGAGGATTTGGAAACCGAGGCGGCGGATCCGGCCCCATGAGGAAC CGACAAAACCTGAACCGCGGTAGAGGCAGACCGACGCCTTACAGCAGGCCCAAACAGCTT CCCGACAAATGGCAGCACGACATGTTTGACAATGGCTTCAGTGGATTCAACGGCGTTGCC AGTGGCGGAGGAGCCGGTGTGGAAACTGGAGGGAAGCTCCTCGTCTCCAATCTAGACTTC GGCGTCTCGGATGCAGATATTCAGGAACTCTTTGCTGAATTTGGAATTCTAAAAAAGGCC GCTGTTCACTACGATCGGTCGGGGAGAAGCCTCGGAACAGCAGATGTTCACTTTGAAAGG AGAGCAGATGCCCTCAAGGCCATGAAACAGTACAACGGCATCCCACTTGATGGGCGGCCT ATGAACATACAGCTCGTCACATCACAGATCGACACACAGCGGCGACCCATGCAGGGTAGA GGCGGTGGAACCATGAACAGAATTCGTGGAGGCGGCTTTGGGGGCATGCAGAAAACCCGT GGGATGCGCGGCGCCGGCGGTTCCAGGGGAAGGGGTCGAGGTGGTCGAGGAGGGGGCAGC AAACAGCCGCTTTCAGCAGAAGAACTCGACGCTCAGTTAGATGCCTACAATGCA



consensusID : consensus_2013#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 476
fasta sequence
                              [CAAGGAGCGCTGTTCTGTGTCAGGGACCAATCAAGGCCATGGTGTATTTTTTTTATATTTTGTAAACAGTTTAGCACTATTTGGCCAGCAAAATGACAGATAAACTGGATATGTCCTTAGACGACATTATCAAGCAGAACAGGCAGCAGAGAGGTGGAGGCCGGGGAGGAAGAGGCCGAGGCCGCGGCATCTCAGGCCGCGGCGGAGGTGTTGGGCGTCTCGGAGGTGGCGACGGAGGATTTGGAAACCGAGGCGGCGGATCCGGCCCCATGAGGAACCGACAAAACCTGAACCGCGGTAGAGGCAGACCGACGCCTTACAGCAGGGTATGAGAAAATTAAAGGAATGGGCAGGAAAAACGGAAAAGCCTTCGGCAAACCTGAAAGTGCCTGGGTTTCATCATTCTGTTCTCAGCTAGGCTTGCTAGCTAACCACCTAACCAGTGAGCTAGTCAAGCAAATAAAATGATTGCTATA]

[+] EMBL CA591525             [CAAGGAGCGCTGTTCTGTGTCAGGGACCAATCAAGGCCATGGTGTATTTTTTTTATATTTTGTAAACAGTTTAGCACTATTTGGCCAGCAAAATGACAGATAAACTGGATATGTCCTTAGACGACATTATCAAGCAGAACAGGCAGCAGAGAGGTGGAGGCCGGGGAGGAAGAGGCCGAGGCCGCGGCATCTCAGGCCGCGGCGGAGGTGTTGGGCGTCTCGGAGGTGGCGACGGAGGATTTGGAAACCGAGGCGGCGGATCCGGCCCCATGAGGAACCGACAAAACCTGAACCGCGGTAGAGGCAGACCGACGCCTTACAGCAGGGTATGAGAAAATTAAAGGAATGGGCAGGAAAAACGGAAAAGCCTTCGGCAAACCTGAAAGTGCCTGGGTTTCATCATTCTGTTCTCAGCTAGGCTTGCTAGCTAACCACCTAACCAGTGAGCTAGTCAAGCAAATAAAATGATTGCTATA]


>consensus_2013#1 CAAGGAGCGCTGTTCTGTGTCAGGGACCAATCAAGGCCATGGTGTATTTTTTTTATATTT TGTAAACAGTTTAGCACTATTTGGCCAGCAAAATGACAGATAAACTGGATATGTCCTTAG ACGACATTATCAAGCAGAACAGGCAGCAGAGAGGTGGAGGCCGGGGAGGAAGAGGCCGAG GCCGCGGCATCTCAGGCCGCGGCGGAGGTGTTGGGCGTCTCGGAGGTGGCGACGGAGGAT TTGGAAACCGAGGCGGCGGATCCGGCCCCATGAGGAACCGACAAAACCTGAACCGCGGTA GAGGCAGACCGACGCCTTACAGCAGGGTATGAGAAAATTAAAGGAATGGGCAGGAAAAAC GGAAAAGCCTTCGGCAAACCTGAAAGTGCCTGGGTTTCATCATTCTGTTCTCAGCTAGGC TTGCTAGCTAACCACCTAACCAGTGAGCTAGTCAAGCAAATAAAATGATTGCTATA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2013#0      --------------------------------------AGGGTGTATTTTTTTTATATTT 22
consensus_2013#1      CAAGGAGCGCTGTTCTGTGTCAGGGACCAATCAAGGCCATGGTGTATTTTTTTTATATTT 60
                                                            * ********************

consensus_2013#0      TGTAAACAGGGGAGCACTATTTGGCCAGCAAAATGACAGATAAACTGGATATGTCCTTAG 82
consensus_2013#1      TGTAAACAGTTTAGCACTATTTGGCCAGCAAAATGACAGATAAACTGGATATGTCCTTAG 120
                      *********   ************************************************

consensus_2013#0      ACGACATTATCAAGCAGAACAGGCAGCAGAGAGGTGGAGGCCGGGGAGGAAGAGGCCGAG 142
consensus_2013#1      ACGACATTATCAAGCAGAACAGGCAGCAGAGAGGTGGAGGCCGGGGAGGAAGAGGCCGAG 180
                      ************************************************************

consensus_2013#0      GCCGCGGCATCTCAGGCCGCGGCGGAGGAGTTGGGCGTCTCGGAGGTGGCGGCGGAGGAT 202
consensus_2013#1      GCCGCGGCATCTCAGGCCGCGGCGGAGGTGTTGGGCGTCTCGGAGGTGGCGACGGAGGAT 240
                      **************************** ********************** ********

consensus_2013#0      TTGGAAACCGAGGCGGCGGATCCGGCCCCATGAGGAACCGACAAAACCTGAACCGCGGTA 262
consensus_2013#1      TTGGAAACCGAGGCGGCGGATCCGGCCCCATGAGGAACCGACAAAACCTGAACCGCGGTA 300
                      ************************************************************

consensus_2013#0      GAGGCAGACCGACGCCTTACAGCAGGCCCAAACAGCTTCCCGACAAATGGCAGCACGACA 322
consensus_2013#1      GAGGCAGACCGACGCCTTACAGCAGGGTATGAGAAAATTAAAGGAATGGGCAGGAAAA-- 358
                      **************************     * *   *      **  ***** *  *  

consensus_2013#0      TGTTTGACAATGGCTTCAGTGGATTCAACGGCGTTGCCAGTGGCGGAGGAGCCGGTGTGG 382
consensus_2013#1      ---ACGGAAAAGCCTTCGGCAAACCTGAAAG---TGCCTGGGTTTCATCATTCTGT-TCT 411
                           *  ** * **** *   *    *  *   **** * *    *  *  * ** *  

consensus_2013#0      AAACTGGAGGGAAGCTCCTCGTCTCCAATCTAGACTTCGGCGTCTCGGATGCAGATATTC 442
consensus_2013#1      CAGCTAGGC-----TTGCTAGCTAACCACCTA-ACCAGTGAGCTAGTCAAGCAAATA--- 462
                       * ** *        * ** *    * * *** **    * *      * *** ***   

consensus_2013#0      AGGAACTCTTTGCTGAATTTGGAATTCTAAAAAAGGCCGCTGTTCACTACGATCGGTCGG 502
consensus_2013#1      ---AAATGATTGCTATA------------------------------------------- 476
                         ** *  *****  *                                           

consensus_2013#0      GGAGAAGCCTCGGAACAGCAGATGTTCACTTTGAAAGGAGAGCAGATGCCCTCAAGGCCA 562
consensus_2013#1      ------------------------------------------------------------
                                                                                  

consensus_2013#0      TGAAACAGTACAACGGCATCCCACTTGATGGGCGGCCTATGAACATACAGCTCGTCACAT 622
consensus_2013#1      ------------------------------------------------------------
                                                                                  

consensus_2013#0      CACAGATCGACACACAGCGGCGACCCATGCAGGGTAGAGGCGGTGGAACCATGAACAGAA 682
consensus_2013#1      ------------------------------------------------------------
                                                                                  

consensus_2013#0      TTCGTGGAGGCGGCTTTGGGGGCATGCAGAAAACCCGTGGGATGCGCGGCGCCGGCGGTT 742
consensus_2013#1      ------------------------------------------------------------
                                                                                  

consensus_2013#0      CCAGGGGAAGGGGTCGAGGTGGTCGAGGAGGGGGCAGCAAACAGCCGCTTTCAGCAGAAG 802
consensus_2013#1      ------------------------------------------------------------
                                                                                  

consensus_2013#0      AACTCGACGCTCAGTTAGATGCCTACAATGCA 834
consensus_2013#1      --------------------------------
                                                      




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)