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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2014#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 630 fasta sequence
[TACCTGGTAAGGTCGGTGCTGTTGACGCGAGCGGGTCCTTTCCAGCCCAGAGTCGGTCCGTCCAAACTTGGACTATTAAATCCAAGGTCAATAATAGATTTTGGACGTCGTTTGTGATTCTGACCGAGTCTATGCGATCGGAATTACGGCTGAAATCAAATTTAATGACATTCGCCATCGCTTGAACTCCGTGACGCCCCCTTAGCTTAGCATAGTTAGCAGCATAGCAAGGTTGGATCAGTCGGTTCAGGTATTTCTACACCCGATCAAGATGCAAAAGGATCATTTGTGAGGAAAGACCCCCATTCACGTGCCATGTCTCTGGTGTTCTCTCGACCCAATACCAACGCACTCCACGGAAAGAAGGATAAGAGACTGATGGCGGAGGTGAACGCGTCGCCACTCAAGCATTTCGTCACTGCAAAGAAGAAAATCAACGGGGTCTTTGAACAGCTGAGCGGCTACATCAAGGAGAGCGCCTCCTTCCTGGAAGATACTCACAAGAATGACGAGCTGGACCCGGTCACCACAGAGGAGCAGGTTCAGGAGGTCTGTGGCTACCTGGCCAAGGTTGCTGGGATCGGAGAGGTTCTGGCCCGCAAGCATATGAAAGTGGTCTTCTTTGGGAGG]
[+] EMBL CA332941 [TACCTGGTAAGGTCGGTGCTGTTGACGCGAGCGGGTCCTTTCCAGCCCAGAGTCGGTCCGTCCAAACTTGGACTATTAAATCCAAGGTCAATAATAGATTTTGGACGTCGTTTGTGATTCTGACCGAGTCTATGCGATCGGAATTACGGCTGAAATCAAATTTAATGACATTCGCCATCGCTTGAACTCCGTGACGCCCCCTTAGCTTAGCATAGTTAGCAGCATAGCAAGGTTGGATCAGTCGGTTCAGGTATTTCTACACCCGATCAAGATGCAAAAGGATCATTTGTGAGGAAAGACCCCCATTCACGTGCCATGTCTCTGGTGTTCTCTCGACCCAATACCAACGCACTCCACGGAAAGAAGGATAAGAGACTGATGGCGGAGGTGAACGCGTCGCCACTCAAGCATTTCGTCACTGCAAAGAAGAAAATCAACGGGGTCTTTGAACAGCTGAGCGGCTACATCAAGGAGAGCGCCTCCTTCCTGGAAGATACTCACAAGAATGACGAGCTGGACCCGGTCACCACAGAGGAGCAGGTTCAGGAGGTCTGTGGCTACCTGGCCAAGGTTGCTGGGATCGGAGAGGTTCTGGCCCGCAAGCATATGAAAGTGGTCTTCTTTGGGAGG]
[+] EMBL BU807566 [ GGTAAGGTCGGTGCTGTTGACGCGAGCGGGTCCTTTCCAGCCCAGAGTCGGTCCGTCCAAACTTGGACTATTAAATCCAAGGTCAATAATAGATTTTGGACGTCGTTTGTGATTCTGACCGAGTCTATGCGATCGGAATTACGGCTGAAATCAAATTTAATGACATTCGCCATCGCTTGAACTCCGTGACGCCCCCTTAGCTTAGCATAGTTAGCAGCATAGCAAGGTTGGATCAGTCGGTTCATGTATTTCTACACCCGATCAAGATGCAAAAGGATCATTTGTGAGGAAAGACCCCCATTCACGTGCCATGTCTCTGGTGTTCTCTCGACCCAATACCAACGCACTCCACGGAAAGAAGGATAAGAGACTGATGGCGGAGGTGAACGCGTCGCCACTCAAGCATTTCGTCACTGCAAAGAAGAAAATCAACGGGATCTTTGAACAGCTGAGCGGCTACATCAAGGAGAGCGCCTCCTTCCTGGAAGATACTCACAAGAATGACGAGCTGGACCCGGTCACCACAGAGGAGCAGGTTCAGGAGGTCTGTGGCTACCTG ]
[+] EMBL FR0060431 [ gTTTGGACGTCGTTTGTGATTCTCACCGAGTCTATGCGATCGGAATTACGGCTGAAATCAAATTTAATGACATTCGCCATCGCTTGAACTCCGTGACGCCCCCTTAGCTTAGCATAGTTAGCAGCATAGCAAGGTTGGATCAGTCGGTTCAGGAATTTCTACACCCGATCAAGATGCAAAAGGATCATTTGTGAGGAAAGACCCCCATTCACGTGCCATGTCTCTGGTGTTCTCTCGACCCAATACCAACGCACTCCACGGAAAGAAGGATAAGAGACTGATGGCGGAGGTGAACGCG ]
consensusID : consensus_2014#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 284 fasta sequence
[CCTTTGCCAAATGCCTTAGTCGCCGAGGGTTGGATGAAAGGCACACTTTATCTGTGTCGCACTCCGGAATTTTTAAATTTAATGACATTCGCCATCGCTTGAACTCCGTGACGCCCCCTTAGCTTAGCATAGTTAGCAGCATAGCAAGGTTGGATCAGTCGGTTCAGGTATTTCTACACCCGATCAAGATGCAAAAGGATCATTTGTGAGGAAAGACCCCCATTCACGTGCCATGTCTCTGGTGTTCTCTCGACCCAATACCAACGCACTCCACGGAAAGAAGG]
[+] EMBL FR0062497 [CCTTTGCCAAATGCCTTAGTCGCCGAGGGTTGGATGAAAGGCACACTTTATCTGTGTCGCACTCCGGAATTTTTAAATTTAATGACATTCGCCATCGCTTGAACTCCGTGACGCCCCCTTAGCTTAGCATAGTTAGCAGCATAGCAAGGTTGGATCAGTCGGTTCAGGTATTTCTACACCCGATCAAGATGCAAAAGGATCATTTGTGAGGAAAGACCCCCATTCACGTGCCATGTCTCTGGTGTTCTCTCGACCCAATACCAACGCACTCCACGGAAAGAAGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2014#0 TACCTGGTAAGGTCGGTGCTGTTGACGCGAGCGGGTCCTTTCCAGCCCAGAGTCGGTCCG 60
consensus_2014#1 ------------------------------------------------------------
consensus_2014#0 TCCAAACTTGGACTATTAAATCCAAGGTCAATAATAGATTTTGGACGTCGTTTGTGATTC 120
consensus_2014#1 ------------CCTTTG---CCAAATGCCTTAGTCG---CCGAGGGTTGGATGAAAGGC 42
* ** **** * ** * * * ** * ** * *
consensus_2014#0 TGACCGAGTCTATGCGATCGGAATTACGGCTGAAATCAAATTTAATGACATTCGCCATCG 180
consensus_2014#1 ACACTTTATCTGTG---TCGCACTCCGGAATT--TTTAAATTTAATGACATTCGCCATCG 97
** *** ** *** * * * * * ***********************
consensus_2014#0 CTTGAACTCCGTGACGCCCCCTTAGCTTAGCATAGTTAGCAGCATAGCAAGGTTGGATCA 240
consensus_2014#1 CTTGAACTCCGTGACGCCCCCTTAGCTTAGCATAGTTAGCAGCATAGCAAGGTTGGATCA 157
************************************************************
consensus_2014#0 GTCGGTTCAGGTATTTCTACACCCGATCAAGATGCAAAAGGATCATTTGTGAGGAAAGAC 300
consensus_2014#1 GTCGGTTCAGGTATTTCTACACCCGATCAAGATGCAAAAGGATCATTTGTGAGGAAAGAC 217
************************************************************
consensus_2014#0 CCCCATTCACGTGCCATGTCTCTGGTGTTCTCTCGACCCAATACCAACGCACTCCACGGA 360
consensus_2014#1 CCCCATTCACGTGCCATGTCTCTGGTGTTCTCTCGACCCAATACCAACGCACTCCACGGA 277
************************************************************
consensus_2014#0 AAGAAGGATAAGAGACTGATGGCGGAGGTGAACGCGTCGCCACTCAAGCATTTCGTCACT 420
consensus_2014#1 AAGAAGG----------------------------------------------------- 284
*******
consensus_2014#0 GCAAAGAAGAAAATCAACGGGGTCTTTGAACAGCTGAGCGGCTACATCAAGGAGAGCGCC 480
consensus_2014#1 ------------------------------------------------------------
consensus_2014#0 TCCTTCCTGGAAGATACTCACAAGAATGACGAGCTGGACCCGGTCACCACAGAGGAGCAG 540
consensus_2014#1 ------------------------------------------------------------
consensus_2014#0 GTTCAGGAGGTCTGTGGCTACCTGGCCAAGGTTGCTGGGATCGGAGAGGTTCTGGCCCGC 600
consensus_2014#1 ------------------------------------------------------------
consensus_2014#0 AAGCATATGAAAGTGGTCTTCTTTGGGAGG 630
consensus_2014#1 ------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |