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Takifugu rubripes
cluster # 2035 cluster # 2035       Sequences # 4       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2035#0 length = 647 sequences # 2  
consensus_2035#1 length = 377 sequences # 1  
consensus_2035#2 length = 153 sequences # 1  

consensusID : consensus_2035#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 647
fasta sequence
                              [AAACAATTTGGGGGGCCTTCAGTTGGTTTAACCAAACATTTTAGCTTCTGCTGCAGAGGAAAAGACTGAAAGGTTGAGGCAGGGTTGGATTTCAAACTGAACTATTTAGGATACAAGAACACTGAAGTAAAGGAACCTTTTAGTTTGGGCTGGGCTGAGGGTCTGACACCTAATGACTGCTGTGTGCTTTAGTTGCTTCTGTAGTTGTTTTTTTGCGGGGGTTCAGGATTTTAAATTATGATTGTATACAATTTTGACTTGTTTGTTTTGTTTTGGACCATATCCTGTGATATCCTGTTAGAAATGACCTCCCAATCATACTATTTCCAAACATCAATATAGTTCAGACAAACCATTATTTTTTGCAGCTATATACTAATCTCCCTATTAATGTTACACGTGTGACCCGGGGTGACGCCTCTGTAAAATACAAATGCAGAGGTTGCAGGTGGACAAACAGTCCTGTTACAGAATATGGTCCAATTTTTCTTTTTTAATTTTTTGTGTAGGGAAAAACAATCTGTGGTGAAGTCAGACAGGTCTTCTCTGTAAACAGTCCCTTTTTTGTGATTTCAATAAAATCTAAATGATACTGTAAAAATGTAAAAAAAAAAGAAAAATCAAAAAAAACAAAAATAATACTGTAA]

[-] EMBL CA332551             [AAACAATTTGGGGGGCCTTCAGTTGGTTTAACCAAACATTTTAGCTTCTGCTGCAGAGGAAAAGACTGAAAGGTTGAGGCAGGGTTGGATTTCAAACTGAACTATTTAGGATACAAGAACACTGAAGTAAAGGAACCTTTTAGTTTGGGCTGGGCTGAGGGTCTGACACCTAATGACTGCTGTGTGCTTTAGTTGCTTCTGTAGTTGTTTTTTTGCGGGGGTTCAGGATTTTAAATTATGATTGTATACAATTTTGACTTGTTTGTTTTGTTTTGGACCATATCCTGTGATATCCTGTTAGAAATGACCTCCCAATCATACTCTTTCCAAACATCAATATAGTTCAGACAAACCATTATTTTTTGCAGCTATATACTAATCTCCCTATTAATGTTACACGTGTGACCCGGGGTGACGCCTCTGTAAAATACAAATGCAGAGGTTGCAGGTGGACAAACAGTCCTGTTACAGAATATGGTCCAATTTTTCTTTTTTAATTTTTTGTGTAGGGAAAAACAATCTGTGGTGAAGTCAGACAGGTCTTCTCTGTAAACAGTCCCTTTTTTGTGATTTCAATAAAATCTAAATGATACT                                                     ]
[+] EMBL FR0055216            [                                                                                                                                                                                                                                                                                                                                  ATTTCCAAACATCAATATAGTTCAGACAAACCATTATTTTTTGCAGCTATATACTAATCTCCCTATTAATGTTACACGTGTGACCCGGGGTGACGCCTCTGTAAAATACAAATGCAGAGGTTGCAGGTGGACAAACAGTCCTGTTACAGAATATGGTCCAATTTTTCTTTTTTAATTTTTTGTGTAGGGAAAAACAATCTGTGGTGAAGTCAGACAGGTCTTCTCTGTAAACAGTCCCTTTTTTGTGATTTCAATAAAATCTAAATGATACTGTAAAAATGTAAAAAAAAAAGAAAAATCAAAAAAAACAAAAATAATACTGTAA]


>consensus_2035#0 AAACAATTTGGGGGGCCTTCAGTTGGTTTAACCAAACATTTTAGCTTCTGCTGCAGAGGA AAAGACTGAAAGGTTGAGGCAGGGTTGGATTTCAAACTGAACTATTTAGGATACAAGAAC ACTGAAGTAAAGGAACCTTTTAGTTTGGGCTGGGCTGAGGGTCTGACACCTAATGACTGC TGTGTGCTTTAGTTGCTTCTGTAGTTGTTTTTTTGCGGGGGTTCAGGATTTTAAATTATG ATTGTATACAATTTTGACTTGTTTGTTTTGTTTTGGACCATATCCTGTGATATCCTGTTA GAAATGACCTCCCAATCATACTATTTCCAAACATCAATATAGTTCAGACAAACCATTATT TTTTGCAGCTATATACTAATCTCCCTATTAATGTTACACGTGTGACCCGGGGTGACGCCT CTGTAAAATACAAATGCAGAGGTTGCAGGTGGACAAACAGTCCTGTTACAGAATATGGTC CAATTTTTCTTTTTTAATTTTTTGTGTAGGGAAAAACAATCTGTGGTGAAGTCAGACAGG TCTTCTCTGTAAACAGTCCCTTTTTTGTGATTTCAATAAAATCTAAATGATACTGTAAAA ATGTAAAAAAAAAAGAAAAATCAAAAAAAACAAAAATAATACTGTAA



consensusID : consensus_2035#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 377
fasta sequence
                              [ATGTAGCCCTTGTGTTTTAAATGTGACCCTGTTCCTCTAATTAGAATTGAAACTGTAAGGAAACAATGCTTGTTATTATTTCTTCTTTTGTTCATACGGCTGTGTGCCTACGCCAAGTTCAACAAGCAGATATGTGAGGTCTGTACGTTTGGTTATTGTTTTCCAACAACGAATTGCACTCCTGACGGATGCGTCTGAAGGCCTGAAGGATTTACACTGCAGCTTGTCTCCAAGGGAAACCATATTTTTTAGGTTCAGTCATCCTTGTGGAGGGGAAATTCACTTGACATCTTTTCCATTGAAACTCTGAACTCCCTACACTGGTCAGAAAGTGAACAAACAATTTGGGGGGCCTTCAGTTGGTTTAACCAAACATT]

[+] EMBL CA844805             [ATGTAGCCCTTGTGTTTTAAATGTGACCCTGTTCCTCTAATTAGAATTGAAACTGTAAGGAAACAATGCTTGTTATTATTTCTTCTTTTGTTCATACGGCTGTGTGCCTACGCCAAGTTCAACAAGCAGATATGTGAGGTCTGTACGTTTGGTTATTGTTTTCCAACAACGAATTGCACTCCTGACGGATGCGTCTGAAGGCCTGAAGGATTTACACTGCAGCTTGTCTCCAAGGGAAACCATATTTTTTAGGTTCAGTCATCCTTGTGGAGGGGAAATTCACTTGACATCTTTTCCATTGAAACTCTGAACTCCCTACACTGGTCAGAAAGTGAACAAACAATTTGGGGGGCCTTCAGTTGGTTTAACCAAACATT]


>consensus_2035#1 ATGTAGCCCTTGTGTTTTAAATGTGACCCTGTTCCTCTAATTAGAATTGAAACTGTAAGG AAACAATGCTTGTTATTATTTCTTCTTTTGTTCATACGGCTGTGTGCCTACGCCAAGTTC AACAAGCAGATATGTGAGGTCTGTACGTTTGGTTATTGTTTTCCAACAACGAATTGCACT CCTGACGGATGCGTCTGAAGGCCTGAAGGATTTACACTGCAGCTTGTCTCCAAGGGAAAC CATATTTTTTAGGTTCAGTCATCCTTGTGGAGGGGAAATTCACTTGACATCTTTTCCATT GAAACTCTGAACTCCCTACACTGGTCAGAAAGTGAACAAACAATTTGGGGGGCCTTCAGT TGGTTTAACCAAACATT



consensusID : consensus_2035#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 153
fasta sequence
                              [TAATTTTTTGTGTAGGGAAAAACAATCTNGTGGTGCCTTTCAGACAGGTCTTCTCTGTAAACAGTCCCATTTTTGTGATTTCAATAAAATCTAAATGATACTGTAAAAATGTAGAACGTTGTGGAAAACGCCCCAGGTTTCATAATAAAGCCA]

[+] EMBL CA845690             [TAATTTTTTGTGTAGGGAAAAACAATCTNGTGGTGCCTTTCAGACAGGTCTTCTCTGTAAACAGTCCCATTTTTGTGATTTCAATAAAATCTAAATGATACTGTAAAAATGTAGAACGTTGTGGAAAACGCCCCAGGTTTCATAATAAAGCCA]


>consensus_2035#2 TAATTTTTTGTGTAGGGAAAAACAATCTNGTGGTGCCTTTCAGACAGGTCTTCTCTGTAA ACAGTCCCATTTTTGTGATTTCAATAAAATCTAAATGATACTGTAAAAATGTAGAACGTT GTGGAAAACGCCCCAGGTTTCATAATAAAGCCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2035#0      AAACAATTTGGGGGGCCTTCAGTTGGTTTAACCAAACATTTTAGCTTCTGCTGCAGAGGA 60
consensus_2035#2      ------------------------------------------------------------
consensus_2035#1      ------------------------------------------------------------
                                                                                  

consensus_2035#0      AAAGACTGAAAGGTTGAGGCAGGGTTGGATTTCAAACTGAACTATTTAGGATACAAGAAC 120
consensus_2035#2      ------------------------------------------------------------
consensus_2035#1      ------------------------------------------------------------
                                                                                  

consensus_2035#0      ACTGAAGTAAAGGAACCTTTTAGTTTGGGCTGGGCTGAGGGTCTGACACCTAATGACTGC 180
consensus_2035#2      ------------------------------------------------------------
consensus_2035#1      ------------------------------------------------------------
                                                                                  

consensus_2035#0      TGTGTGCTTTAGTTGCTTCTGTAGTTGTTTTTTTGCGGGGGTTCAGGATTTTAAATTATG 240
consensus_2035#2      ------------------------------------------------------------
consensus_2035#1      ------------------------------------------------------------
                                                                                  

consensus_2035#0      ATTGTATACAATTTTGACTTGTTTGTTTTGTTTTGGACCATATCCTGTGATATCCTGTTA 300
consensus_2035#2      ------------------------------------------------------------
consensus_2035#1      -----------------------------------ATGTAGCCCTTGTGTTTTAAATGTG 25
                                                                                  

consensus_2035#0      GAAATGACCTCCCAATCATACTATTTCCAAACATCAATATAGTTCAGACAAACCATTATT 360
consensus_2035#2      ------------------------------------------------------------
consensus_2035#1      ACCCTGTTCCTCTAATTAGAATTGAAACTGTAAGGAAACAATGCTTGTTATTATTTCTTC 85
                                                                                  

consensus_2035#0      TTTTGCAGCTATATACTAATCTCCCTATTAATGTTACACGTGTGACCCGGGGTGACGCCT 420
consensus_2035#2      ------------------------------------------------------------
consensus_2035#1      TTTTGTTCATACGGCTGTGTGCCTACGCCAAGTTCAACAAGCAGATATGTGAGGTCTGTA 145
                                                                                  

consensus_2035#0      CTGTAAAATACAAATGCAGAGGTTGCAGGTGGACAAACAGTCCTGTTACAGAATATGGTC 480
consensus_2035#2      ------------------------------------------------------------
consensus_2035#1      CGTTTGGTTATTGTTTTCCAACAACGAATTGCACTCCTGACGGATGCGTCTGAAGGCCTG 205
                                                                                  

consensus_2035#0      CAATTTTTCTTTTTTAATTTTTTGTGTAGGGAAAAACAATCTG-TGGTGAAGT-CAGACA 538
consensus_2035#2      --------------TAATTTTTTGTGTAGGGAAAAACAATCTNGTGGTGCCTTTCAGACA 46
consensus_2035#1      AAGGATTTACACTGCAGCTTGTCTCCAAGGGAAACCATATTTTTTAG----GTTCAGTCA 261
                                     *  ** *     *******    ** *  * *     * *** **

consensus_2035#0      GGTCTTCTCTGTAAACAGTCCCTTTTTTGTGATTTCAAT--AAAATCTAAATG----ATA 592
consensus_2035#2      GGTCTTCTCTGTAAACAGTCCCATTTTTGTGATTTCAAT--AAAATCTAAATG----ATA 100
consensus_2035#1      T-CCTTGTGGAGGGGAAATTCACTTGACATCTTTTCCATTGAAACTCTGAACTCCCTACA 320
                         *** *        * * *  **    *  **** **  *** *** **      * *

consensus_2035#0      CTG-TAAAAATGTAAA---AAAAAAAGAAAAAT-CAAAAAAAACAAAAATAATACTGTAA 647
consensus_2035#2      CTG-TAAAAATGTAGA---ACGTTGTGGAAAACGCCCCAGGTTTCATAATAAAGCCA--- 153
consensus_2035#1      CTGGTCAGAAAGTGAACAAACAATTTGGGGGGC-CTTCAGTTGGTTTAACCAAACATT-- 377
                      *** * * ** **  *   *      *       *   *        **  *  *     




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)