These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2035#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 647 fasta sequence [AAACAATTTGGGGGGCCTTCAGTTGGTTTAACCAAACATTTTAGCTTCTGCTGCAGAGGAAAAGACTGAAAGGTTGAGGCAGGGTTGGATTTCAAACTGAACTATTTAGGATACAAGAACACTGAAGTAAAGGAACCTTTTAGTTTGGGCTGGGCTGAGGGTCTGACACCTAATGACTGCTGTGTGCTTTAGTTGCTTCTGTAGTTGTTTTTTTGCGGGGGTTCAGGATTTTAAATTATGATTGTATACAATTTTGACTTGTTTGTTTTGTTTTGGACCATATCCTGTGATATCCTGTTAGAAATGACCTCCCAATCATACTATTTCCAAACATCAATATAGTTCAGACAAACCATTATTTTTTGCAGCTATATACTAATCTCCCTATTAATGTTACACGTGTGACCCGGGGTGACGCCTCTGTAAAATACAAATGCAGAGGTTGCAGGTGGACAAACAGTCCTGTTACAGAATATGGTCCAATTTTTCTTTTTTAATTTTTTGTGTAGGGAAAAACAATCTGTGGTGAAGTCAGACAGGTCTTCTCTGTAAACAGTCCCTTTTTTGTGATTTCAATAAAATCTAAATGATACTGTAAAAATGTAAAAAAAAAAGAAAAATCAAAAAAAACAAAAATAATACTGTAA] [-] EMBL CA332551 [AAACAATTTGGGGGGCCTTCAGTTGGTTTAACCAAACATTTTAGCTTCTGCTGCAGAGGAAAAGACTGAAAGGTTGAGGCAGGGTTGGATTTCAAACTGAACTATTTAGGATACAAGAACACTGAAGTAAAGGAACCTTTTAGTTTGGGCTGGGCTGAGGGTCTGACACCTAATGACTGCTGTGTGCTTTAGTTGCTTCTGTAGTTGTTTTTTTGCGGGGGTTCAGGATTTTAAATTATGATTGTATACAATTTTGACTTGTTTGTTTTGTTTTGGACCATATCCTGTGATATCCTGTTAGAAATGACCTCCCAATCATACTCTTTCCAAACATCAATATAGTTCAGACAAACCATTATTTTTTGCAGCTATATACTAATCTCCCTATTAATGTTACACGTGTGACCCGGGGTGACGCCTCTGTAAAATACAAATGCAGAGGTTGCAGGTGGACAAACAGTCCTGTTACAGAATATGGTCCAATTTTTCTTTTTTAATTTTTTGTGTAGGGAAAAACAATCTGTGGTGAAGTCAGACAGGTCTTCTCTGTAAACAGTCCCTTTTTTGTGATTTCAATAAAATCTAAATGATACT ] [+] EMBL FR0055216 [ ATTTCCAAACATCAATATAGTTCAGACAAACCATTATTTTTTGCAGCTATATACTAATCTCCCTATTAATGTTACACGTGTGACCCGGGGTGACGCCTCTGTAAAATACAAATGCAGAGGTTGCAGGTGGACAAACAGTCCTGTTACAGAATATGGTCCAATTTTTCTTTTTTAATTTTTTGTGTAGGGAAAAACAATCTGTGGTGAAGTCAGACAGGTCTTCTCTGTAAACAGTCCCTTTTTTGTGATTTCAATAAAATCTAAATGATACTGTAAAAATGTAAAAAAAAAAGAAAAATCAAAAAAAACAAAAATAATACTGTAA] consensusID : consensus_2035#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 377 fasta sequence [ATGTAGCCCTTGTGTTTTAAATGTGACCCTGTTCCTCTAATTAGAATTGAAACTGTAAGGAAACAATGCTTGTTATTATTTCTTCTTTTGTTCATACGGCTGTGTGCCTACGCCAAGTTCAACAAGCAGATATGTGAGGTCTGTACGTTTGGTTATTGTTTTCCAACAACGAATTGCACTCCTGACGGATGCGTCTGAAGGCCTGAAGGATTTACACTGCAGCTTGTCTCCAAGGGAAACCATATTTTTTAGGTTCAGTCATCCTTGTGGAGGGGAAATTCACTTGACATCTTTTCCATTGAAACTCTGAACTCCCTACACTGGTCAGAAAGTGAACAAACAATTTGGGGGGCCTTCAGTTGGTTTAACCAAACATT] [+] EMBL CA844805 [ATGTAGCCCTTGTGTTTTAAATGTGACCCTGTTCCTCTAATTAGAATTGAAACTGTAAGGAAACAATGCTTGTTATTATTTCTTCTTTTGTTCATACGGCTGTGTGCCTACGCCAAGTTCAACAAGCAGATATGTGAGGTCTGTACGTTTGGTTATTGTTTTCCAACAACGAATTGCACTCCTGACGGATGCGTCTGAAGGCCTGAAGGATTTACACTGCAGCTTGTCTCCAAGGGAAACCATATTTTTTAGGTTCAGTCATCCTTGTGGAGGGGAAATTCACTTGACATCTTTTCCATTGAAACTCTGAACTCCCTACACTGGTCAGAAAGTGAACAAACAATTTGGGGGGCCTTCAGTTGGTTTAACCAAACATT] consensusID : consensus_2035#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 153 fasta sequence [TAATTTTTTGTGTAGGGAAAAACAATCTNGTGGTGCCTTTCAGACAGGTCTTCTCTGTAAACAGTCCCATTTTTGTGATTTCAATAAAATCTAAATGATACTGTAAAAATGTAGAACGTTGTGGAAAACGCCCCAGGTTTCATAATAAAGCCA] [+] EMBL CA845690 [TAATTTTTTGTGTAGGGAAAAACAATCTNGTGGTGCCTTTCAGACAGGTCTTCTCTGTAAACAGTCCCATTTTTGTGATTTCAATAAAATCTAAATGATACTGTAAAAATGTAGAACGTTGTGGAAAACGCCCCAGGTTTCATAATAAAGCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2035#0 AAACAATTTGGGGGGCCTTCAGTTGGTTTAACCAAACATTTTAGCTTCTGCTGCAGAGGA 60 consensus_2035#2 ------------------------------------------------------------ consensus_2035#1 ------------------------------------------------------------ consensus_2035#0 AAAGACTGAAAGGTTGAGGCAGGGTTGGATTTCAAACTGAACTATTTAGGATACAAGAAC 120 consensus_2035#2 ------------------------------------------------------------ consensus_2035#1 ------------------------------------------------------------ consensus_2035#0 ACTGAAGTAAAGGAACCTTTTAGTTTGGGCTGGGCTGAGGGTCTGACACCTAATGACTGC 180 consensus_2035#2 ------------------------------------------------------------ consensus_2035#1 ------------------------------------------------------------ consensus_2035#0 TGTGTGCTTTAGTTGCTTCTGTAGTTGTTTTTTTGCGGGGGTTCAGGATTTTAAATTATG 240 consensus_2035#2 ------------------------------------------------------------ consensus_2035#1 ------------------------------------------------------------ consensus_2035#0 ATTGTATACAATTTTGACTTGTTTGTTTTGTTTTGGACCATATCCTGTGATATCCTGTTA 300 consensus_2035#2 ------------------------------------------------------------ consensus_2035#1 -----------------------------------ATGTAGCCCTTGTGTTTTAAATGTG 25 consensus_2035#0 GAAATGACCTCCCAATCATACTATTTCCAAACATCAATATAGTTCAGACAAACCATTATT 360 consensus_2035#2 ------------------------------------------------------------ consensus_2035#1 ACCCTGTTCCTCTAATTAGAATTGAAACTGTAAGGAAACAATGCTTGTTATTATTTCTTC 85 consensus_2035#0 TTTTGCAGCTATATACTAATCTCCCTATTAATGTTACACGTGTGACCCGGGGTGACGCCT 420 consensus_2035#2 ------------------------------------------------------------ consensus_2035#1 TTTTGTTCATACGGCTGTGTGCCTACGCCAAGTTCAACAAGCAGATATGTGAGGTCTGTA 145 consensus_2035#0 CTGTAAAATACAAATGCAGAGGTTGCAGGTGGACAAACAGTCCTGTTACAGAATATGGTC 480 consensus_2035#2 ------------------------------------------------------------ consensus_2035#1 CGTTTGGTTATTGTTTTCCAACAACGAATTGCACTCCTGACGGATGCGTCTGAAGGCCTG 205 consensus_2035#0 CAATTTTTCTTTTTTAATTTTTTGTGTAGGGAAAAACAATCTG-TGGTGAAGT-CAGACA 538 consensus_2035#2 --------------TAATTTTTTGTGTAGGGAAAAACAATCTNGTGGTGCCTTTCAGACA 46 consensus_2035#1 AAGGATTTACACTGCAGCTTGTCTCCAAGGGAAACCATATTTTTTAG----GTTCAGTCA 261 * ** * ******* ** * * * * *** ** consensus_2035#0 GGTCTTCTCTGTAAACAGTCCCTTTTTTGTGATTTCAAT--AAAATCTAAATG----ATA 592 consensus_2035#2 GGTCTTCTCTGTAAACAGTCCCATTTTTGTGATTTCAAT--AAAATCTAAATG----ATA 100 consensus_2035#1 T-CCTTGTGGAGGGGAAATTCACTTGACATCTTTTCCATTGAAACTCTGAACTCCCTACA 320 *** * * * * ** * **** ** *** *** ** * * consensus_2035#0 CTG-TAAAAATGTAAA---AAAAAAAGAAAAAT-CAAAAAAAACAAAAATAATACTGTAA 647 consensus_2035#2 CTG-TAAAAATGTAGA---ACGTTGTGGAAAACGCCCCAGGTTTCATAATAAAGCCA--- 153 consensus_2035#1 CTGGTCAGAAAGTGAACAAACAATTTGGGGGGC-CTTCAGTTGGTTTAACCAAACATT-- 377 *** * * ** ** * * * * * ** * * |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |