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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2038#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 636 fasta sequence
[TCACCTTGACTAATATCGACAGTCAGCAGTTATGGAAATAATTACACAAGACAAGCAGATCTTCATGCTCATGTCTGAAAGGTGATGGAAGATAAGAGAGAATCAAATCAGCAACGTGCTGCAGAACAGCCAACAGAGGGCAGCAGAGAGGCCACAGATGCGACCAGTCTGACCACATTTGAGACTAGTCTGACCACAGATGAGTCCAATCTGACCATAGCAGTGGACGAACAGCATACTCTGACGGAGACGGGTGTCTTTAATGAATCCACCTTGATGGTGATGGAGGTTAGCTCCTCCCAACCAAGCACCTCCCCACTTCACCCCGTGATAACAATAGAGAATGACTTCATGCCAGATGTCCTCACGGTCCTGGTCCAGACTGATGAAGGTGACTACCAGGAGCTGATGGTAGAGATTGAGCATCCTTGCTATCAGAAAAGGTTCCTGGGAGGATACAGACACCAGCTGACAGGGGTGGAGTACCATCACGCAGCTGTGCAGACGCTGCAGAAGAAGAGACCTGACAGAGGAGTTCAGCTGTTCAGCCGCGACACACAGACAGTGGAGCTCAGGTGTCAGGAGCAGCAGTGTGCAGTTGACGTCTCTACTCAGATGACCAGGGTCGGTTGTTTC]
[+] EMBL CA333162 [TCACCTTGACTAATATCGACAGTCAGCAGTTATGGAAATAATTACACAAGACAAGCAGATCTTCATGCTCATGTCTGAAAGGTGATGGAAGATAAGAGAGAATCAAATCAGCAACGTGCTGCAGAACAGCCAACAGAGGGCAGCAGAGAGGCCACAGATGCGACCAGTCTGACCACATTTGAGACTAGTCTGACCACAGATGAGTCCAATCTGACCATAGCAGTGGACGAACAGCATACTCTGACGGAGACGGGTGTCTTTAATGAATCCACCTTGATGGTGATGGAGGTTAGCTCCTCCCAACCAAGCACCTCCCCACTTCACCCCGTGATAACAATAGAGAATGACTTCATGCCAGATGTCCTCACGGTCCTGGTCCAGACTGATGAAGGTGACTACCAGGAGCTGATGGTAGAGATTGAGCATCCTTGCTATCAGAAAAGGTTCCTGGGAGGATACAGACACCAGCTGACAGGGGTGGAGTACCATCACGCAGCTGTGCAGACG ]
[+] EMBL BU807499 [ GTTATGGAAATAATTACACAAGACAAGCAGATCTTCATGCTCATGTCTGAAAGGTGATGGAAGATAAGAGAGAATCAAATCAGCAACGTGCTGCAGAACAGCCAACAGAGGGCAGCAGAGAGGCCACAGATGCGACCAGTCTGACCACATTTGAGACTAGTCTGACCACAGATGAGTCCAGTCTGACCATAGCAGTGGACGAACAGCATACTCTGACGGAGACGGGTGTCTTTAATGAATCCACCTTGATGGTGATGGAGGTTAGCTCCTCCCAACCAAGCACCTCCCCACTTCACCCCGTGATAACAATAGAGAATGACTTCATGCCAGATGTCCTCACGGTCCTGGTCCAGACTGATGAAGGTGACTACCAGGAGCTGATGGTAGAGATTGAGCATCCTTGCTATCAGAAAAGGTTCCTGGGAGGATACAGACACCAGCTGACAGGGGTGGAGTACCATCACGCAGCTGTGCAGACGCTGCAGAAGAAGAGACCTGACAGAGGAGTTCAGCTGTTCAGCCGCGACACACAGACAGTGGAGCTCAGGTGTCAGGAGCAGCAGTGTGCAGTTGACGTCT ]
[+] EMBL CA590731 [ ATCTTCATGCTCATGTCTGAAAGGTGATGGAAGATAAGAGAGAATCAAATCAGCAACGTGCTGCAGAACAGCCAACAGAGGGCAGCAGAGAGGCCACAGATGCGACCAGTCTGACCACATTTGAGACTAGTCTGACCACAGATGAGTCCAATCTGACCATAGCAGTGGACGAACAGCATACTCTGACGGAGACGGGTGTCTTTAATGAATCCACCTTGATGGTGATGGAGGTTAGCTCCTCCCAACCAAGCACCTCCCCACTTCACCCCGTGATAACAATAGAGAATGACTTCATGCCAGATGTCCTCACGGTCCTGGTCCAGACTGATGAAGGTGACTACCAGGAGCTGATGGTAGAGATTGAGCATCCTTGCTATCAGAAAAGGTTCCTGGGAGGATACAGACACCAGCTGACAGGGGTGGAGTACCATCACGCAGCTGTGCAGACGCTGCAGAAGAAGAGACCTGACAGAGGAGTTCAGCTGTTCAGCCGCGACACACAGACAGTGGAGCTCAGGTGTCAGGAGCAGCAGTGTGCAGTTGACGTCTCTACTCAGATGACCAGGGTCGGTTGTTTC]
consensusID : consensus_2038#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 522 fasta sequence
[CATCAACATTTTGCAGTTTCACGGTTATATATGGCATGTTTGTGGTTCAGGCACCAAAAACGCCAAACCGTGCGCTTCAACGTGGACTGAGTTACTGCCACGATTTTCTGTGACGTTCAGATGTGCGGGGCCTCGGCGGAGTCTGCTCCGAACCTTGAGCAGGATCTGCCGCTGATCTATGAATGACCTTTGAAATGATTCACAGATCTTCATGCTCATGTCTGAAAGGTGATGGAAGATAAGAGAGAATCAAATCAGCAACGTGCTGCAGAACAGCCAACAGAGGGCAGCAGAGAGGCCACAGATGCGACCAGTCTGACCACATTTGAGACTAGTCTGACCACAGATGAGTCCAATCTGACCATAGCAGTGGACGAACAGCATACTCTGACGGAGACGGGTGTCTTTAATGAATCCACCTTGATGGTGATGGAGGTTAGCTCCTCCCAACCAAGCACCTCCCCACTTCACCCCGTGATAACAATAGAGAATGACTTCATGCCAGATGTCCTCACGGTCCTG]
[+] EMBL CA590497 [CATCAACATTTTGCAGTTTCACGGTTATATATGGCATGTTTGTGGTTCAGGCACCAAAAACGCCAAACCGTGCGCTTCAACGTGGACTGAGTTACTGCCACGATTTTCTGTGACGTTCAGATGTGCGGGGCCTCGGCGGAGTCTGCTCCGAACCTTGAGCAGGATCTGCCGCTGATCTATGAATGACCTTTGAAATGATTCACAGATCTTCATGCTCATGTCTGAAAGGTGATGGAAGATAAGAGAGAATCAAATCAGCAACGTGCTGCAGAACAGCCAACAGAGGGCAGCAGAGAGGCCACAGATGCGACCAGTCTGACCACATTTGAGACTAGTCTGACCACAGATGAGTCCAATCTGACCATAGCAGTGGACGAACAGCATACTCTGACGGAGACGGGTGTCTTTAATGAATCCACCTTGATGGTGATGGAGGTTAGCTCCTCCCAACCAAGCACCTCCCCACTTCACCCCGTGATAACAATAGAGAATGACTTCATGCCAGATGTCCTCACGGTCCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2038#0 ------------------------------------------------------------
consensus_2038#1 CATCAACATTTTGCAGTTTCACGGTTATATATGGCATGTTTGTGGTTCAGGCACCAAAAA 60
consensus_2038#0 ------------------------------------------------------------
consensus_2038#1 CGCCAAACCGTGCGCTTCAACGTGGACTGAGTTACTGCCACGATTTTCTGTGACGTTCAG 120
consensus_2038#0 -----------------------------TCACCTTGACTAATATCGACAGTCAGCAGTT 31
consensus_2038#1 ATGTGCGGGGCCTCGGCGGAGTCTGCTCCGAACCTTGAGCAGGATCTGCCGCTGAT--CT 178
******* * *** * * *
consensus_2038#0 ATGGAAATAATTACACAAGACAAGCAGATCTTCATGCTCATGTCTGAAAGGTGATGGAAG 91
consensus_2038#1 ATGAATGACCTTTGAAATGATTCACAGATCTTCATGCTCATGTCTGAAAGGTGATGGAAG 238
*** * ** * * ** ************************************
consensus_2038#0 ATAAGAGAGAATCAAATCAGCAACGTGCTGCAGAACAGCCAACAGAGGGCAGCAGAGAGG 151
consensus_2038#1 ATAAGAGAGAATCAAATCAGCAACGTGCTGCAGAACAGCCAACAGAGGGCAGCAGAGAGG 298
************************************************************
consensus_2038#0 CCACAGATGCGACCAGTCTGACCACATTTGAGACTAGTCTGACCACAGATGAGTCCAATC 211
consensus_2038#1 CCACAGATGCGACCAGTCTGACCACATTTGAGACTAGTCTGACCACAGATGAGTCCAATC 358
************************************************************
consensus_2038#0 TGACCATAGCAGTGGACGAACAGCATACTCTGACGGAGACGGGTGTCTTTAATGAATCCA 271
consensus_2038#1 TGACCATAGCAGTGGACGAACAGCATACTCTGACGGAGACGGGTGTCTTTAATGAATCCA 418
************************************************************
consensus_2038#0 CCTTGATGGTGATGGAGGTTAGCTCCTCCCAACCAAGCACCTCCCCACTTCACCCCGTGA 331
consensus_2038#1 CCTTGATGGTGATGGAGGTTAGCTCCTCCCAACCAAGCACCTCCCCACTTCACCCCGTGA 478
************************************************************
consensus_2038#0 TAACAATAGAGAATGACTTCATGCCAGATGTCCTCACGGTCCTGGTCCAGACTGATGAAG 391
consensus_2038#1 TAACAATAGAGAATGACTTCATGCCAGATGTCCTCACGGTCCTG---------------- 522
********************************************
consensus_2038#0 GTGACTACCAGGAGCTGATGGTAGAGATTGAGCATCCTTGCTATCAGAAAAGGTTCCTGG 451
consensus_2038#1 ------------------------------------------------------------
consensus_2038#0 GAGGATACAGACACCAGCTGACAGGGGTGGAGTACCATCACGCAGCTGTGCAGACGCTGC 511
consensus_2038#1 ------------------------------------------------------------
consensus_2038#0 AGAAGAAGAGACCTGACAGAGGAGTTCAGCTGTTCAGCCGCGACACACAGACAGTGGAGC 571
consensus_2038#1 ------------------------------------------------------------
consensus_2038#0 TCAGGTGTCAGGAGCAGCAGTGTGCAGTTGACGTCTCTACTCAGATGACCAGGGTCGGTT 631
consensus_2038#1 ------------------------------------------------------------
consensus_2038#0 GTTTC 636
consensus_2038#1 -----
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |