These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2049#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 602 fasta sequence [AGGGCATGATAATCAACAGCCTTGGAGTGGCTCCACCAATATCCAATGATGACATGAGCCTTTTTGTGGCCATGCTCTACGACCTTCAGAGCAGAAAGTTCCTCCCGAGGCAACACCAGGAAAACGAGGAGACTATACCTGATGTAACCCTTGTGGAGAGAGTAATCCTTGGCTTTAAAACAAAGCTGGCGGCGTCTCTGGCCCGCCACCGGATCAAACATCAGCTCCTCTCGGTTGAGAGTTTCCTGCCAGAAACCGTGAAGCTAAAGCAGGAGAGATCACTGAGGCTCCCCATCTACGCGTGGGTGAACGCACTGAAGAGCAGCCCTGAAGAGATCCAGCGTGTGCTGAGGAGCGCAGGCTTCTGTCAGGTTAAATCCATCAGACAGCTGGTGGACAGGACATTCTGCTGGGACCATCACTGCAGGGACGTGCTGGTATTCCCGGCCCTCTGCAGGAGTCAGCTGTACTCGACCGGACTACTTAGTGACTGCAAGCTCGTCATCCAGGACAAGTCCTGTAGCTTGGGTCCTCAGGCGGTGTTCTCCCTGCTTCCGGACGATGCTGATGTGCTGTTAGTCGGCCATTTTTCTGGCCTCACG] [+] EMBL BU807452 [AGGGCATGATAATCAACAGCCTTGGAGTGGCTCCACCAATATCCAATGATGACATGAGCCTTTTTGTGGCCATGCTCTACGACCTTCAGAGCAGAAAGTTCCTCCCGAGGCAACACCAGGAAAACGAGGAGACTATACCTGATGTAACCCTTGTGGAGAGAGTAATCCTTGGCTTTAAAACAAAGCTGGCGGCGTCTCTGGCCCGCCACCGGATCAAACATCAGCTCCTCTCGGTTGAGAGTTTCCTGCCAGAAACCGTGAAGCTAAAGCAGGAGAGATCACTGAGGCTCCCCATCTACGCGTGGGTGAACGCACTGAAGAGCAGCCCTGAAGAGATCCAGCGTGTGCTGAGGAGCGCAGGCTTCTGTCAGGTTAAATCCATCAGACAGCTGGTGGACAGGACATTCTGCTGGGACCATCACTGCAGGGACGTGCTGGTATTCCCGGCCCTCTGCAGGAGTCAGCTGTACTCGACCGGACTACTTAGTGACTGCAAGCTCGTCATCCAGGACAAGTCCTGTAGCTTGGGTCCTCAGGCGGTGTTCTCCCTGCTTCCGGACGATGCTGATGTGCTGTTAGTCGGCCATTTTTCTGGCCTCACG] consensusID : consensus_2049#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 588 fasta sequence [GTATGAGATGATGCTCCGTAAAAATAAGAGACTTCACAAACGTGCTTCCCAGCAACAGAGAGATGTCCAGGCTAAAGCCCAGACAAGCCCGGCTCCTCAGGAACATCCGTCCACCGGCGCCGTCCCCGCTCCCTTTGCCTGTCCAGAAGTTCAGGCCCAGTCCCAAAGTCACCAGGAATTTCCAGACAGAATATACCTGCTGGCATCAGTCATTTTCCAGAATCTCCACCCGGAAAAGCCGGCGATGCGAAAATTGGTGAATTATGGCAACAAGAGAAGGCTCCCGTTACCTGAAGTGAAGTTCGAAGAGCGACCTTCATCTTATGAGCTGGCCTTCAATACGCTTAAATAAAAGTTGCTCAGTAAGCTCCGTAACGGTGGCCGAGGACACCGACTTGGCTGTGGGCTCACTGTGACCGTCCACCAAGGATGAAATACAGAGTGGAATAAGAGTCGCTGATGAAGGTTCGACATTTCCGGAGGACGGTGAAGTCACACGGACAACAACCATCTTCCAGGACTTTTAAACTCTCTTTTTAAACTCCTAAACTCTTAAATTAAGAGTCGGCTGAATCGTGTCCACCACAG] [+] EMBL CA332787 [GTATGAGATGATGCTCCGTAAAAATAAGAGACTTCACAAACGTGCTTCCCAGCAACAGAGAGATGTCCAGGCTAAAGCCCAGACAAGCCCGGCTCCTCAGGAACATCCGTCCACCGGCGCCGTCCCCGCTCCCTTTGCCTGTCCAGAAGTTCAGGCCCAGTCCCAAAGTCACCAGGAATTTCCAGACAGAATATACCTGCTGGCATCAGTCATTTTCCAGAATCTCCACCCGGAAAAGCCGGCGATGCGAAAATTGGTGAATTATGGCAACAAGAGAAGGCTCCCGTTACCTGAAGTGAAGTTCGAAGAGCGACCTTCATCTTATGAGCTGGCCTTCAATACGCTTAAATAAAAGTTGCTCAGTAAGCTCCGTAACGGTGGCCGAGGACACCGACTTGGCTGTGGGCTCACTGTGACCGTCCACCAAGGATGAAATACAGAGTGGAATAAGAGTCGCTGATGAAGGTTCGACATTTCCGGAGGACGGTGAAGTCACACGGACAACAACCATCTTCCAGGACTTTTAAACTCTCTTTTTAAACTCCTAAACTCTTAAATTAAGAGTCGGCTGAATCGTGTCCACCACAG] [+] EMBL CA590230 [GTATGAGATGATGCTCCGTAAAAATAAGAGACTTCACAAACGTGCTTCCCAGCAACAGAGAGATGTCCAGGCTAAAGCCCAGACAAGCCCGGCTCCTCAGGAACATCCGTCCACCGGCGCCGTCCCCGCTCCCTTTGCCTGTCCAGAAGTTCAGGCCCAGTCCCAAAGTCACCAGGAATTTCCAGACAGAATATACCTGCTGGCATCAGTCATTTTCCAGAATCTCCACCCGGAAAAGCCGGCGATGCGAAAATTGGTGAATTATGGCAACAAGAGAAGGCTCCCGTTACCTGAAGTGAAGTTCGAAGAGCGACCT ] consensusID : consensus_2049#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 381 fasta sequence [AGACTTCACAAACGTGCTTCCCAGCAACAGAGAGATGGGCAGGCTAAAGCCCAGACAAGCCCGGCTCCTCAGGAACATCCGTCCACCGGCGCCGTCCCCGCTCCCTTTGCCTGTCCAGAAGTTCAGGCCCAGTCCCAAAGTCACCAGGAATTTCCAGACAGAATATACCTGCTGGCATCAGACATTTTCCAGAATCTCCACCCGGAAAAGCCGGCGATGCGAAAATTGGTGAATTATGGCAACAAGAGAAGGCTCCCGTTACCTGAAGTGAAGTTCGAAGAGCGACCTTCATCTTATGAGCTGGCCTTCAATACGCTTAAATATCAAGACTTCCTGGAGGGCATGATAATCAACAGCTTTGGAGTGGCTCCACCAATATCC] [+] EMBL FR0061062 [AGACTTCACAAACGTGCTTCCCAGCAACAGAGAGATGGGCAGGCTAAAGCCCAGACAAGCCCGGCTCCTCAGGAACATCCGTCCACCGGCGCCGTCCCCGCTCCCTTTGCCTGTCCAGAAGTTCAGGCCCAGTCCCAAAGTCACCAGGAATTTCCAGACAGAATATACCTGCTGGCATCAGACATTTTCCAGAATCTCCACCCGGAAAAGCCGGCGATGCGAAAATTGGTGAATTATGGCAACAAGAGAAGGCTCCCGTTACCTGAAGTGAAGTTCGAAGAGCGACCTTCATCTTATGAGCTGGCCTTCAATACGCTTAAATATCAAGACTTCCTGGAGGGCATGATAATCAACAGCTTTGGAGTGGCTCCACCAATATCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2049#1 GTATGAGATGATGCTCCGTAAAAATAAGA-GACTTCACAAACGTGCT----TCCCAGCAA 55 consensus_2049#2 ----------------------------A-GACTTCACAAACGTGCT----TCCCAGCAA 27 consensus_2049#0 --AGGGCATGATAATCAACAGCCTTGGAGTGGCTCCACCAATATCCAATGATGACATGAG 58 * ** *** ** * * * ** * consensus_2049#1 CAGAGAGATGTCCAGGCT----AAAGCCCAGACAAGCCCGG--CTCCTCAGG-AACATCC 108 consensus_2049#2 CAGAGAGATGGGCAGGCT----AAAGCCCAGACAAGCCCGG--CTCCTCAGG-AACATCC 80 consensus_2049#0 CCTTTTTGTGGCCATGCTCTACGACCTTCAGAGCAGAAAGTTCCTCCCGAGGCAACACCA 118 * ** ** *** * **** ** * **** *** **** * consensus_2049#1 GTCCACCGGCG---CCGTCCCCGCTCCCTTTGCCTGTCCAGAAGTTCAGGCCCAGTCCCA 165 consensus_2049#2 GTCCACCGGCG---CCGTCCCCGCTCCCTTTGCCTGTCCAGAAGTTCAGGCCCAGTCCCA 137 consensus_2049#0 GGAAAACGAGGAGACTATACCTGATGTAACC-CTTGTGGAGAGAGTAATCCTTGGCTTTA 177 * * ** * * * ** * * * *** *** * * * * * consensus_2049#1 AAGTCA--CCAGGAATTTC-CAGACAGAATATACCTGCTGGCATCAGTCATTTTCC---- 218 consensus_2049#2 AAGTCA--CCAGGAATTTC-CAGACAGAATATACCTGCTGGCATCAGACATTTTCC---- 190 consensus_2049#0 AAACAAAGCTGGCGGCGTCTCTGGCCCGCCACCGGATCAAACATCAGCTCCTCTCGGTTG 237 ** * * * ** * * * * * ****** * ** consensus_2049#1 AGAATCTCCACCCGGAAA------AGCCGGCGATGCGAAAATTGGTGAATTATGGCAACA 272 consensus_2049#2 AGAATCTCCACCCGGAAA------AGCCGGCGATGCGAAAATTGGTGAATTATGGCAACA 244 consensus_2049#0 AGAGTTTCCTGCCAGAAACCGTGAAGCTAAAGCAGGAGAGATCACTGAGGCTCCCCATCT 297 *** * *** ** **** *** * * * ** *** ** * consensus_2049#1 AGAGAAGGCTCCCGTTACCTGAAGTGAAGTTC-GAAGAG--CGACCTTCATCTTATGAGC 329 consensus_2049#2 AGAGAAGGCTCCCGTTACCTGAAGTGAAGTTC-GAAGAG--CGACCTTCATCTTATGAGC 301 consensus_2049#0 ACGCGTGGGTGAACGCAC-TGAAGAGCAGCCCTGAAGAGATCCAGCGTGTGCTGAGGAGC 356 * ** * ** ***** * ** * ****** * * * * ** * **** consensus_2049#1 -TGGCCTTCAATACGCTTAAATAAAAGTTGCTCAGTAAGCTCCGTAA-CGGTGGCCGAG- 386 consensus_2049#2 -TGGCCTTCAATACGCTTAAATA--------TCA--AGACTTCCTGG-AGGGCATGATA- 348 consensus_2049#0 GCAGGCTTCTGTCAGGTTAAATCCA------TCAGACAGCTGGTGGACAGGACATTCTGC 410 * **** * * ****** *** ** ** consensus_2049#1 -GACACCGACTTGGCTGTGGGCTCACTGTGACCGTCCACCAAGGATGAAATACAGAGTGG 445 consensus_2049#2 -ATCAACAGCTTTGGAGTGGCTCCACCAATATCC-------------------------- 381 consensus_2049#0 TGGGACCATCACTGCAG-GGACGTGCTGGTATTCCCGGCCCTCTGCAGGAGTCAGC-TGT 468 * * * * * ** * * consensus_2049#1 AATAAGAGTCGCTGATGAAGGTTCGACATTTCCGGAGGACGGTGAAGTCACACGGACAAC 505 consensus_2049#2 ------------------------------------------------------------ consensus_2049#0 ACTCGACCGGACTACTTAGTGACTGCAAGCTCGTCATCCAGGACAAGTCCTGTAGCTTGG 528 consensus_2049#1 AACCATCTTCCAGGACTTTTAAACTCTCTTTTTAAACTCCTAAACTCTTAAATTAAGAGT 565 consensus_2049#2 ------------------------------------------------------------ consensus_2049#0 GTCCTCAGGCGGTGTTCTCCCTGCTTCCGGACGATGCTGATGTGCTGTTAGTCGGCCATT 588 consensus_2049#1 CGGCTGAATCGTGTCCACCACAG 588 consensus_2049#2 ----------------------- consensus_2049#0 TTTCTGGCCTCACG--------- 602 |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |