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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2049#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 602 fasta sequence
[AGGGCATGATAATCAACAGCCTTGGAGTGGCTCCACCAATATCCAATGATGACATGAGCCTTTTTGTGGCCATGCTCTACGACCTTCAGAGCAGAAAGTTCCTCCCGAGGCAACACCAGGAAAACGAGGAGACTATACCTGATGTAACCCTTGTGGAGAGAGTAATCCTTGGCTTTAAAACAAAGCTGGCGGCGTCTCTGGCCCGCCACCGGATCAAACATCAGCTCCTCTCGGTTGAGAGTTTCCTGCCAGAAACCGTGAAGCTAAAGCAGGAGAGATCACTGAGGCTCCCCATCTACGCGTGGGTGAACGCACTGAAGAGCAGCCCTGAAGAGATCCAGCGTGTGCTGAGGAGCGCAGGCTTCTGTCAGGTTAAATCCATCAGACAGCTGGTGGACAGGACATTCTGCTGGGACCATCACTGCAGGGACGTGCTGGTATTCCCGGCCCTCTGCAGGAGTCAGCTGTACTCGACCGGACTACTTAGTGACTGCAAGCTCGTCATCCAGGACAAGTCCTGTAGCTTGGGTCCTCAGGCGGTGTTCTCCCTGCTTCCGGACGATGCTGATGTGCTGTTAGTCGGCCATTTTTCTGGCCTCACG]
[+] EMBL BU807452 [AGGGCATGATAATCAACAGCCTTGGAGTGGCTCCACCAATATCCAATGATGACATGAGCCTTTTTGTGGCCATGCTCTACGACCTTCAGAGCAGAAAGTTCCTCCCGAGGCAACACCAGGAAAACGAGGAGACTATACCTGATGTAACCCTTGTGGAGAGAGTAATCCTTGGCTTTAAAACAAAGCTGGCGGCGTCTCTGGCCCGCCACCGGATCAAACATCAGCTCCTCTCGGTTGAGAGTTTCCTGCCAGAAACCGTGAAGCTAAAGCAGGAGAGATCACTGAGGCTCCCCATCTACGCGTGGGTGAACGCACTGAAGAGCAGCCCTGAAGAGATCCAGCGTGTGCTGAGGAGCGCAGGCTTCTGTCAGGTTAAATCCATCAGACAGCTGGTGGACAGGACATTCTGCTGGGACCATCACTGCAGGGACGTGCTGGTATTCCCGGCCCTCTGCAGGAGTCAGCTGTACTCGACCGGACTACTTAGTGACTGCAAGCTCGTCATCCAGGACAAGTCCTGTAGCTTGGGTCCTCAGGCGGTGTTCTCCCTGCTTCCGGACGATGCTGATGTGCTGTTAGTCGGCCATTTTTCTGGCCTCACG]
consensusID : consensus_2049#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 588 fasta sequence
[GTATGAGATGATGCTCCGTAAAAATAAGAGACTTCACAAACGTGCTTCCCAGCAACAGAGAGATGTCCAGGCTAAAGCCCAGACAAGCCCGGCTCCTCAGGAACATCCGTCCACCGGCGCCGTCCCCGCTCCCTTTGCCTGTCCAGAAGTTCAGGCCCAGTCCCAAAGTCACCAGGAATTTCCAGACAGAATATACCTGCTGGCATCAGTCATTTTCCAGAATCTCCACCCGGAAAAGCCGGCGATGCGAAAATTGGTGAATTATGGCAACAAGAGAAGGCTCCCGTTACCTGAAGTGAAGTTCGAAGAGCGACCTTCATCTTATGAGCTGGCCTTCAATACGCTTAAATAAAAGTTGCTCAGTAAGCTCCGTAACGGTGGCCGAGGACACCGACTTGGCTGTGGGCTCACTGTGACCGTCCACCAAGGATGAAATACAGAGTGGAATAAGAGTCGCTGATGAAGGTTCGACATTTCCGGAGGACGGTGAAGTCACACGGACAACAACCATCTTCCAGGACTTTTAAACTCTCTTTTTAAACTCCTAAACTCTTAAATTAAGAGTCGGCTGAATCGTGTCCACCACAG]
[+] EMBL CA332787 [GTATGAGATGATGCTCCGTAAAAATAAGAGACTTCACAAACGTGCTTCCCAGCAACAGAGAGATGTCCAGGCTAAAGCCCAGACAAGCCCGGCTCCTCAGGAACATCCGTCCACCGGCGCCGTCCCCGCTCCCTTTGCCTGTCCAGAAGTTCAGGCCCAGTCCCAAAGTCACCAGGAATTTCCAGACAGAATATACCTGCTGGCATCAGTCATTTTCCAGAATCTCCACCCGGAAAAGCCGGCGATGCGAAAATTGGTGAATTATGGCAACAAGAGAAGGCTCCCGTTACCTGAAGTGAAGTTCGAAGAGCGACCTTCATCTTATGAGCTGGCCTTCAATACGCTTAAATAAAAGTTGCTCAGTAAGCTCCGTAACGGTGGCCGAGGACACCGACTTGGCTGTGGGCTCACTGTGACCGTCCACCAAGGATGAAATACAGAGTGGAATAAGAGTCGCTGATGAAGGTTCGACATTTCCGGAGGACGGTGAAGTCACACGGACAACAACCATCTTCCAGGACTTTTAAACTCTCTTTTTAAACTCCTAAACTCTTAAATTAAGAGTCGGCTGAATCGTGTCCACCACAG]
[+] EMBL CA590230 [GTATGAGATGATGCTCCGTAAAAATAAGAGACTTCACAAACGTGCTTCCCAGCAACAGAGAGATGTCCAGGCTAAAGCCCAGACAAGCCCGGCTCCTCAGGAACATCCGTCCACCGGCGCCGTCCCCGCTCCCTTTGCCTGTCCAGAAGTTCAGGCCCAGTCCCAAAGTCACCAGGAATTTCCAGACAGAATATACCTGCTGGCATCAGTCATTTTCCAGAATCTCCACCCGGAAAAGCCGGCGATGCGAAAATTGGTGAATTATGGCAACAAGAGAAGGCTCCCGTTACCTGAAGTGAAGTTCGAAGAGCGACCT ]
consensusID : consensus_2049#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 381 fasta sequence
[AGACTTCACAAACGTGCTTCCCAGCAACAGAGAGATGGGCAGGCTAAAGCCCAGACAAGCCCGGCTCCTCAGGAACATCCGTCCACCGGCGCCGTCCCCGCTCCCTTTGCCTGTCCAGAAGTTCAGGCCCAGTCCCAAAGTCACCAGGAATTTCCAGACAGAATATACCTGCTGGCATCAGACATTTTCCAGAATCTCCACCCGGAAAAGCCGGCGATGCGAAAATTGGTGAATTATGGCAACAAGAGAAGGCTCCCGTTACCTGAAGTGAAGTTCGAAGAGCGACCTTCATCTTATGAGCTGGCCTTCAATACGCTTAAATATCAAGACTTCCTGGAGGGCATGATAATCAACAGCTTTGGAGTGGCTCCACCAATATCC]
[+] EMBL FR0061062 [AGACTTCACAAACGTGCTTCCCAGCAACAGAGAGATGGGCAGGCTAAAGCCCAGACAAGCCCGGCTCCTCAGGAACATCCGTCCACCGGCGCCGTCCCCGCTCCCTTTGCCTGTCCAGAAGTTCAGGCCCAGTCCCAAAGTCACCAGGAATTTCCAGACAGAATATACCTGCTGGCATCAGACATTTTCCAGAATCTCCACCCGGAAAAGCCGGCGATGCGAAAATTGGTGAATTATGGCAACAAGAGAAGGCTCCCGTTACCTGAAGTGAAGTTCGAAGAGCGACCTTCATCTTATGAGCTGGCCTTCAATACGCTTAAATATCAAGACTTCCTGGAGGGCATGATAATCAACAGCTTTGGAGTGGCTCCACCAATATCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2049#1 GTATGAGATGATGCTCCGTAAAAATAAGA-GACTTCACAAACGTGCT----TCCCAGCAA 55
consensus_2049#2 ----------------------------A-GACTTCACAAACGTGCT----TCCCAGCAA 27
consensus_2049#0 --AGGGCATGATAATCAACAGCCTTGGAGTGGCTCCACCAATATCCAATGATGACATGAG 58
* ** *** ** * * * ** *
consensus_2049#1 CAGAGAGATGTCCAGGCT----AAAGCCCAGACAAGCCCGG--CTCCTCAGG-AACATCC 108
consensus_2049#2 CAGAGAGATGGGCAGGCT----AAAGCCCAGACAAGCCCGG--CTCCTCAGG-AACATCC 80
consensus_2049#0 CCTTTTTGTGGCCATGCTCTACGACCTTCAGAGCAGAAAGTTCCTCCCGAGGCAACACCA 118
* ** ** *** * **** ** * **** *** **** *
consensus_2049#1 GTCCACCGGCG---CCGTCCCCGCTCCCTTTGCCTGTCCAGAAGTTCAGGCCCAGTCCCA 165
consensus_2049#2 GTCCACCGGCG---CCGTCCCCGCTCCCTTTGCCTGTCCAGAAGTTCAGGCCCAGTCCCA 137
consensus_2049#0 GGAAAACGAGGAGACTATACCTGATGTAACC-CTTGTGGAGAGAGTAATCCTTGGCTTTA 177
* * ** * * * ** * * * *** *** * * * * *
consensus_2049#1 AAGTCA--CCAGGAATTTC-CAGACAGAATATACCTGCTGGCATCAGTCATTTTCC---- 218
consensus_2049#2 AAGTCA--CCAGGAATTTC-CAGACAGAATATACCTGCTGGCATCAGACATTTTCC---- 190
consensus_2049#0 AAACAAAGCTGGCGGCGTCTCTGGCCCGCCACCGGATCAAACATCAGCTCCTCTCGGTTG 237
** * * * ** * * * * * ****** * **
consensus_2049#1 AGAATCTCCACCCGGAAA------AGCCGGCGATGCGAAAATTGGTGAATTATGGCAACA 272
consensus_2049#2 AGAATCTCCACCCGGAAA------AGCCGGCGATGCGAAAATTGGTGAATTATGGCAACA 244
consensus_2049#0 AGAGTTTCCTGCCAGAAACCGTGAAGCTAAAGCAGGAGAGATCACTGAGGCTCCCCATCT 297
*** * *** ** **** *** * * * ** *** ** *
consensus_2049#1 AGAGAAGGCTCCCGTTACCTGAAGTGAAGTTC-GAAGAG--CGACCTTCATCTTATGAGC 329
consensus_2049#2 AGAGAAGGCTCCCGTTACCTGAAGTGAAGTTC-GAAGAG--CGACCTTCATCTTATGAGC 301
consensus_2049#0 ACGCGTGGGTGAACGCAC-TGAAGAGCAGCCCTGAAGAGATCCAGCGTGTGCTGAGGAGC 356
* ** * ** ***** * ** * ****** * * * * ** * ****
consensus_2049#1 -TGGCCTTCAATACGCTTAAATAAAAGTTGCTCAGTAAGCTCCGTAA-CGGTGGCCGAG- 386
consensus_2049#2 -TGGCCTTCAATACGCTTAAATA--------TCA--AGACTTCCTGG-AGGGCATGATA- 348
consensus_2049#0 GCAGGCTTCTGTCAGGTTAAATCCA------TCAGACAGCTGGTGGACAGGACATTCTGC 410
* **** * * ****** *** ** **
consensus_2049#1 -GACACCGACTTGGCTGTGGGCTCACTGTGACCGTCCACCAAGGATGAAATACAGAGTGG 445
consensus_2049#2 -ATCAACAGCTTTGGAGTGGCTCCACCAATATCC-------------------------- 381
consensus_2049#0 TGGGACCATCACTGCAG-GGACGTGCTGGTATTCCCGGCCCTCTGCAGGAGTCAGC-TGT 468
* * * * * ** * *
consensus_2049#1 AATAAGAGTCGCTGATGAAGGTTCGACATTTCCGGAGGACGGTGAAGTCACACGGACAAC 505
consensus_2049#2 ------------------------------------------------------------
consensus_2049#0 ACTCGACCGGACTACTTAGTGACTGCAAGCTCGTCATCCAGGACAAGTCCTGTAGCTTGG 528
consensus_2049#1 AACCATCTTCCAGGACTTTTAAACTCTCTTTTTAAACTCCTAAACTCTTAAATTAAGAGT 565
consensus_2049#2 ------------------------------------------------------------
consensus_2049#0 GTCCTCAGGCGGTGTTCTCCCTGCTTCCGGACGATGCTGATGTGCTGTTAGTCGGCCATT 588
consensus_2049#1 CGGCTGAATCGTGTCCACCACAG 588
consensus_2049#2 -----------------------
consensus_2049#0 TTTCTGGCCTCACG--------- 602
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |