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Takifugu rubripes
cluster # 2053 cluster # 2053       Sequences # 4       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2053#0 length = 597 sequences # 3  
 consensus_2053#1 length = 336 sequences # 1  
consensusID : consensus_2053#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 597
fasta sequence 
                              [GTGTTCCCAACGTGGTCTGTCGTGGTGCGTCTCAGTGAGGATGGGGGAGTTAAAAGTTCACCGCGTGCGCTTCTTTGACTACATGCCCAGCGCTATCCGAGCCATGGCCTTCAACCCCCGGACCGAGCGGCTGGCTGTGGCCCGGGAGGATGGAGCTCTGGAGATCTTCAACTTCTCCGACCATTATTTCCAAGAAAAGGTGGTCCCGGGTCAGAAGGGTCGGGCTACGGACGCTCTGTGTTGGGTCGGTCCGCGTCTCTTCAGCGCTGGTTTGAATGGCGAGATCACAGAATACGACCTGGACACGCTGAGGCCCAAGTACTCCGTCAGTGCCTATGGAGGACCCATCTGGAGCATCAGCAGCAACCCCCAGGGAACGCTGCTCGCGGTGGGCTGTGAGGACGGCACCGTCAAGATGTTTGAAATCCTGGAGCAGAGGATTCAGTTTCAGAAGAACTTGGACAGGCAGAAGGGTCGGATTATTTCTCTGTCCTGGCATTCGTCTGGCGCCCTGATTGCGGCAGGAATGATGGATATGATCCGGATCTTCGATGCCAACACAGGCCACGCCACGCGGCGGCTGCTGGTGGAGCGCGG]

[+] EMBL BU807437             [GTGTTCCCAACGTGGTCTGTCGTGGTGCGTCTCAGTGAGGATGGGGGAGTTAAAAGTTCACCGCGTGCGCTTCTTTGACTACATGCCCAGCGCTATCCGAGCCATGGCCTTCAACCCCCGGACCGAGCGGCTGGCTGTGGCCCGGGAGGATGGAGCTCTGGAGATCTTCAACTTCTCCGACCATTATTTCCAAGAAAAGGTGGTCCCGGGTCAGAAGGGTCGGGCTACGGACGCTCTGTGTTGGGTCGGTCCGCGTCTCTTCAGCGCTGGTTTGAATGGCGAGATCACAGAATACGACCTGGACACGCTGAGGCCCAAGTACTCCGTCAGTGCCTATGGAGGACCCATCTGGAGCATCAGCAGCAACCCCCAGGGAACGCTGCTCGCGGTGGGCTGTGAGGACGGCACCGTCAAGATGTTTGAAATCCTGGAGCAGAGGATTCAGTTTCAGAAGAACTTGGACAGGCAGAAGGGTCGGATTATTTCTCTGTCCTGGCATTCGTCTGGCGCCCTGATTGCGGCAGGAATGATGGATATGATCCGGATCTTCGATGCCAACACAGGCCACGCCACGCGGCGGCTGCTGGTGGAGCGCGG]
[+] EMBL FR0061741            [                                                                     CTTCTTTGACTACATGCCCAGCGCTATGCGAGCCATGGCCTTCAACCCCCGGACCGAGCGGCTGGCTGTGGCCCGGGAGGATGGAGCTCTGGAGATCTTCAACTTCTCCGACCATTATTTCCAAGAAAAGGTGGTCCCGGGTCAGAAGGGTCGGGCTACGGACGCTCTGTGTTGGGTCGGTCCGCGTCTCTTCAGCGCTGGTTTGAATGGCGAGATCACAGAATACGACCTGGACACGCTGAGGCCCAAGTACTCCGTCAGTGCCTATGGAGGACCCATCTGGAGCATCAGCAGCAACCC                                                                                                                                                                                                                                    ]
[+] EMBL FR0060844            [                                                                                  ATGCCCAGCGCTATCCGAGCCATGGCCTTCAACCCCCGGACCGAGCGGCTGGCTGTGGCCCGGGAGGATGGAGCTCTGGAGATCTTCAACTTCTCCGACCATTATTTCCAAGAAAAGGTGGTCCCGGGTCAGAAGGGTCGGGCTACGGACGTTCTGTGTTGGGTCGGGCCGCGTCTCTTCAGCGCTGGTTTGAATGGCGAGATCACAGAATACGACCTGCACACGCTGAG                                                                                                                                                                                                                                                                                             ]




>consensus_2053#0
GTGTTCCCAACGTGGTCTGTCGTGGTGCGTCTCAGTGAGGATGGGGGAGTTAAAAGTTCA
CCGCGTGCGCTTCTTTGACTACATGCCCAGCGCTATCCGAGCCATGGCCTTCAACCCCCG
GACCGAGCGGCTGGCTGTGGCCCGGGAGGATGGAGCTCTGGAGATCTTCAACTTCTCCGA
CCATTATTTCCAAGAAAAGGTGGTCCCGGGTCAGAAGGGTCGGGCTACGGACGCTCTGTG
TTGGGTCGGTCCGCGTCTCTTCAGCGCTGGTTTGAATGGCGAGATCACAGAATACGACCT
GGACACGCTGAGGCCCAAGTACTCCGTCAGTGCCTATGGAGGACCCATCTGGAGCATCAG
CAGCAACCCCCAGGGAACGCTGCTCGCGGTGGGCTGTGAGGACGGCACCGTCAAGATGTT
TGAAATCCTGGAGCAGAGGATTCAGTTTCAGAAGAACTTGGACAGGCAGAAGGGTCGGAT
TATTTCTCTGTCCTGGCATTCGTCTGGCGCCCTGATTGCGGCAGGAATGATGGATATGAT
CCGGATCTTCGATGCCAACACAGGCCACGCCACGCGGCGGCTGCTGGTGGAGCGCGG

consensusID : consensus_2053#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 336
fasta sequence 
                              [CGCTCAGGAGGGGGGCTATTAAAAGTTCACCGCGTGCGCTTCTTTGACTACATGCCCAGCGCTATCCGAGCCATGGCCTTCAACCCCCGGACCGAGCGGTTGGCTGTGGCCCGGAAGGATGGAGCTTTGGAGATCTTCAACTTCTCCGACCATTATTTCCAAGAAAAGGGGGCCCCGGTTCAGAAGGGTCGGTCTACGGACGCTCTGTGTTGGGGCGGTCCGCGTCTCTCCAGCGCTGGGTTGAATGGGGAGATCACAGAATACGACCTGTACACGCTGAGGCCCAAGGACTTCCGTGAGTGCCTATTGGAGGAACCAATTTGGGGGCATTCAGCA]

[+] EMBL FR0060632            [CGCTCAGGAGGGGGGCTATTAAAAGTTCACCGCGTGCGCTTCTTTGACTACATGCCCAGCGCTATCCGAGCCATGGCCTTCAACCCCCGGACCGAGCGGTTGGCTGTGGCCCGGAAGGATGGAGCTTTGGAGATCTTCAACTTCTCCGACCATTATTTCCAAGAAAAGGGGGCCCCGGTTCAGAAGGGTCGGTCTACGGACGCTCTGTGTTGGGGCGGTCCGCGTCTCTCCAGCGCTGGGTTGAATGGGGAGATCACAGAATACGACCTGTACACGCTGAGGCCCAAGGACTTCCGTGAGTGCCTATTGGAGGAACCAATTTGGGGGCATTCAGCA]




>consensus_2053#1
CGCTCAGGAGGGGGGCTATTAAAAGTTCACCGCGTGCGCTTCTTTGACTACATGCCCAGC
GCTATCCGAGCCATGGCCTTCAACCCCCGGACCGAGCGGTTGGCTGTGGCCCGGAAGGAT
GGAGCTTTGGAGATCTTCAACTTCTCCGACCATTATTTCCAAGAAAAGGGGGCCCCGGTT
CAGAAGGGTCGGTCTACGGACGCTCTGTGTTGGGGCGGTCCGCGTCTCTCCAGCGCTGGG
TTGAATGGGGAGATCACAGAATACGACCTGTACACGCTGAGGCCCAAGGACTTCCGTGAG
TGCCTATTGGAGGAACCAATTTGGGGGCATTCAGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2053#0      GTGTTCCCAACGTGGTCTGTCGTGGTGCGTCTCAGTGAGGATGGGGGA-GTTAAAAGTTC 59
consensus_2053#1      --------------------------------CGCTCAGGAGGGGGGCTATTAAAAGTTC 28
                                                      *  * **** *****   **********

consensus_2053#0      ACCGCGTGCGCTTCTTTGACTACATGCCCAGCGCTATCCGAGCCATGGCCTTCAACCCCC 119
consensus_2053#1      ACCGCGTGCGCTTCTTTGACTACATGCCCAGCGCTATCCGAGCCATGGCCTTCAACCCCC 88
                      ************************************************************

consensus_2053#0      GGACCGAGCGGCTGGCTGTGGCCCGGGAGGATGGAGCTCTGGAGATCTTCAACTTCTCCG 179
consensus_2053#1      GGACCGAGCGGTTGGCTGTGGCCCGGAAGGATGGAGCTTTGGAGATCTTCAACTTCTCCG 148
                      *********** ************** *********** *********************

consensus_2053#0      ACCATTATTTCCAAGAAAAGGTGGTCCCGGGTCAGAAGGGTCGGGCTACGGACGCTCTGT 239
consensus_2053#1      ACCATTATTTCCAAGAAAAGGGGGCCCCGGTTCAGAAGGGTCGGTCTACGGACGCTCTGT 208
                      ********************* ** ***** ************* ***************

consensus_2053#0      GTTGGGTCGGTCCGCGTCTCTTCAGCGCTGGTTTGAATGGCGAGATCACAGAATACGACC 299
consensus_2053#1      GTTGGGGCGGTCCGCGTCTCTCCAGCGCTGGGTTGAATGGGGAGATCACAGAATACGACC 268
                      ****** ************** ********* ******** *******************

consensus_2053#0      TGGACACGCTGAGGCCCAAGTACT-CCGTCAGTGCCTAT-GGAGGACCCATCTGGAGCAT 357
consensus_2053#1      TGTACACGCTGAGGCCCAAGGACTTCCGTGAGTGCCTATTGGAGGAACCAATTTGGGGGC 328
                      ** ***************** *** **** ********* ****** ***  * * *   

consensus_2053#0      CAGCAGCAACCCCCAGGGAACGCTGCTCGCGGTGGGCTGTGAGGACGGCACCGTCAAGAT 417
consensus_2053#1      ATTCAGCA---------------------------------------------------- 336
                         *****                                                    

consensus_2053#0      GTTTGAAATCCTGGAGCAGAGGATTCAGTTTCAGAAGAACTTGGACAGGCAGAAGGGTCG 477
consensus_2053#1      ------------------------------------------------------------
                                                                                  

consensus_2053#0      GATTATTTCTCTGTCCTGGCATTCGTCTGGCGCCCTGATTGCGGCAGGAATGATGGATAT 537
consensus_2053#1      ------------------------------------------------------------
                                                                                  

consensus_2053#0      GATCCGGATCTTCGATGCCAACACAGGCCACGCCACGCGGCGGCTGCTGGTGGAGCGCGG 597
consensus_2053#1      ------------------------------------------------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)