cluster # 2057

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Takifugu rubripes
cluster # 2057 cluster # 2057 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2057#0 length = 604 sequences # 2

consensus_2057#1 length = 512 sequences # 1
consensus_2057#2 length = 167 sequences # 1

consensusID : consensus_2057#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 604
fasta sequence

                              [ATTGATGTGCTGTTGCTTAGTGTTTTTTCCTGAGTAGTTATGTCAAAATAATATGAACTGTAAAGAACGCGCTGGAGGAAGAACTTTGGTAGTGTATTCAGCAAAGAAACTATCGAAGATGCAGAACATGTTAAACATCGTGAAGGGGACGGCTCATGGCGTGGCTGAATACCTCACTCCAGTGCTGAAGGAATCCAAATTTAAAGAGACTGGAGTCATTACTCCAGAGGAGTTTGTAGCAGCTGGAGATTATCTGGNTCACCACTGCCCAACATGGAAATGGGCTTCAGGAGAGGAGGTCAAAGGGAAGCCATATTTACCTGAGGATAAACAGTTTCTCTTGACGCGCAATGTTCCTTGTTACAAACGTTGTAGACAAATGGAGGACTCAGATGAGCTGGAAGCCATCATAGAGGAGGATGATGGTGACGGGGGCTGGGTGGACACTTACCATAACTCGGCAGTTTTAGGAGTCACAGATGCTGTGCAGGATATTTCACTAGATAATAACAAGGACAAGAATATGAATGCCACCTCTGCAACATGTGCTGATGANGATGATGGAGACGACGATGATGGCGAAGCAGCAGATATGGAAGAGTAT]

[+] EMBL CA846241             [ATTGATGTGCTGTTGCTTAGTGTTTTTTCCTGAGTAGTTCTGTCAAAATAATATGAACTGTAAAGAACGCGCTTTA CAAGAACTTTGGTAGTGTATTCAGCAAAGAAACTATCGAAGATGCAGAACATGTTAAACATCGTGAAGGGGACGGCTCATGGCGTGGCTGAATACCTCACTCCAGTGCTGAAGGAATCCAAATTTAAAGAGACTGGAGTCATTACTCCAGAGGAGTTTGTAGCAGCTGGAGATTATCTGGTTCACCACTGCCCAACATGGAAATGGGCTTCAGGAGAGGAGGTCAAAGTGAAGCCATATTTACCTGAGGATAAACAGTTTCTCTTGACGCGCAATGTTCCTTGTTACAAACGTTGTAAACAAATGGAGTACTCAGATGAGCTGGAAGCCATCATAGAGGAGGATGATGGTGACGGGGGCTGGGTGGACACTTACCATAACTCGGCAGTTTTAGGAGTCACAGATGCTGTGCAGGATATTTCACTAGATAATAACAAGGACAAGAATATGAATGCCACCTCTGCAACATGTGCTGATGANGATGATGGAGACGACGATGATGGCGAAGCAGCAGATATGGAAGAGTAT]
[+] EMBL FR0063659            [            TTGCTTAGTGTTTTTTCCTGAGTAGTTATGTCAAAATAATATGAATTGTAAAGAACGCGCTGGAGGAAGAACTTTGGTAGTGTATTCAGCAAAGAAACTATCGAAGATGCAGAACATGTTAAACATCGTGAAGGGGACGGCTCTTGGCGTGGCTGAATACCTCACTCCAGTGCTGAAGGAATCCAAATTTAAAGAGACTGGAGTCATTACTCCAGAGGAGTTTGTAGCAGCTGGAGATTATCTGGNTCACCACTGCCCAACATGGAAATGGGCTTCAGGAGAGGAGGTCAAAGGGAAGCCATATTTACCTGAGGATAAACAGTTTCTCTTGACGCGCAATGTTCCTTGTTACAAACGTTGTAGACAAATGGAGGACTCAGATGA                                                                                                                                                                                                                ]




>consensus_2057#0
ATTGATGTGCTGTTGCTTAGTGTTTTTTCCTGAGTAGTTATGTCAAAATAATATGAACTG
TAAAGAACGCGCTGGAGGAAGAACTTTGGTAGTGTATTCAGCAAAGAAACTATCGAAGAT
GCAGAACATGTTAAACATCGTGAAGGGGACGGCTCATGGCGTGGCTGAATACCTCACTCC
AGTGCTGAAGGAATCCAAATTTAAAGAGACTGGAGTCATTACTCCAGAGGAGTTTGTAGC
AGCTGGAGATTATCTGGNTCACCACTGCCCAACATGGAAATGGGCTTCAGGAGAGGAGGT
CAAAGGGAAGCCATATTTACCTGAGGATAAACAGTTTCTCTTGACGCGCAATGTTCCTTG
TTACAAACGTTGTAGACAAATGGAGGACTCAGATGAGCTGGAAGCCATCATAGAGGAGGA
TGATGGTGACGGGGGCTGGGTGGACACTTACCATAACTCGGCAGTTTTAGGAGTCACAGA
TGCTGTGCAGGATATTTCACTAGATAATAACAAGGACAAGAATATGAATGCCACCTCTGC
AACATGTGCTGATGANGATGATGGAGACGACGATGATGGCGAAGCAGCAGATATGGAAGA
GTAT

consensusID : consensus_2057#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 512
fasta sequence

                              [CTTAGTGTTTTTTCCTGAGTAGTTATGTCAAAATAATATGAATTGTAAAGAACGCGCTTTACAAGAACTTTGGTAGTGTATTCAGCAAAGAAACTATCGAAGATGCAGAACATGTTAAACATCGTGAAGGGAACGGCTCTTGGCGTGGCTGAATACCTCACTCCAGTGCTGAAGGAATCCAAATTTAAAGAGACTGGAAATGGGCTTCAGGAGAGGAGGTCAAAGTGAAGCCATATTTACCTGAGGATATACAGTTTCTCTTGACACGCAATGTTCCTTGTTACAAACGTTGTAAACAAATGGAGTACTCAGATGAGCTGGAAGCCATCATAGAGGAGGATGATGGTGACGGGGGCTGGGTGGACACTTACCATAACTCGGCAGCTTTAGGAGTCACGGATGCTGTGCAGGATATTTCACTAGATAATAACAAGGACAAGAATATGAATGCCACCTCTGCAACATGTGCTGATGAGGATGATGGAGACGACGATGATGGCGAAGCAGCAGAT]

[+] EMBL CA589082             [CTTAGTGTTTTTTCCTGAGTAGTTATGTCAAAATAATATGAATTGTAAAGAACGCGCTTTACAAGAACTTTGGTAGTGTATTCAGCAAAGAAACTATCGAAGATGCAGAACATGTTAAACATCGTGAAGGGAACGGCTCTTGGCGTGGCTGAATACCTCACTCCAGTGCTGAAGGAATCCAAATTTAAAGAGACTGGAAATGGGCTTCAGGAGAGGAGGTCAAAGTGAAGCCATATTTACCTGAGGATATACAGTTTCTCTTGACACGCAATGTTCCTTGTTACAAACGTTGTAAACAAATGGAGTACTCAGATGAGCTGGAAGCCATCATAGAGGAGGATGATGGTGACGGGGGCTGGGTGGACACTTACCATAACTCGGCAGCTTTAGGAGTCACGGATGCTGTGCAGGATATTTCACTAGATAATAACAAGGACAAGAATATGAATGCCACCTCTGCAACATGTGCTGATGAGGATGATGGAGACGACGATGATGGCGAAGCAGCAGAT]




>consensus_2057#1
CTTAGTGTTTTTTCCTGAGTAGTTATGTCAAAATAATATGAATTGTAAAGAACGCGCTTT
ACAAGAACTTTGGTAGTGTATTCAGCAAAGAAACTATCGAAGATGCAGAACATGTTAAAC
ATCGTGAAGGGAACGGCTCTTGGCGTGGCTGAATACCTCACTCCAGTGCTGAAGGAATCC
AAATTTAAAGAGACTGGAAATGGGCTTCAGGAGAGGAGGTCAAAGTGAAGCCATATTTAC
CTGAGGATATACAGTTTCTCTTGACACGCAATGTTCCTTGTTACAAACGTTGTAAACAAA
TGGAGTACTCAGATGAGCTGGAAGCCATCATAGAGGAGGATGATGGTGACGGGGGCTGGG
TGGACACTTACCATAACTCGGCAGCTTTAGGAGTCACGGATGCTGTGCAGGATATTTCAC
TAGATAATAACAAGGACAAGAATATGAATGCCACCTCTGCAACATGTGCTGATGAGGATG
ATGGAGACGACGATGATGGCGAAGCAGCAGAT

consensusID : consensus_2057#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 167
fasta sequence

                              [ACGAGAAGGGAACGGAACTTGGCGCGGCGGAACACCNCACACCAGGGCAGAAGGAANCCAAACCGAAAGAGACAGGAGGCACCACTTTTTTTTTTTTCGAAGCACATGGAGATTACGTGGATCACCATTGCCAAACATGGAAATGGGCTTCAGGAGAGGAGGTCAAA]

[+] EMBL CA844851             [ACGAGAAGGGAACGGAACTTGGCGCGGCGGAACACCNCACACCAGGGCAGAAGGAANCCAAACCGAAAGAGACAGGAGGCACCACTTTTTTTTTTTTCGAAGCACATGGAGATTACGTGGATCACCATTGCCAAACATGGAAATGGGCTTCAGGAGAGGAGGTCAAA]




>consensus_2057#2
ACGAGAAGGGAACGGAACTTGGCGCGGCGGAACACCNCACACCAGGGCAGAAGGAANCCA
AACCGAAAGAGACAGGAGGCACCACTTTTTTTTTTTTCGAAGCACATGGAGATTACGTGG
ATCACCATTGCCAAACATGGAAATGGGCTTCAGGAGAGGAGGTCAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2057#0      ATTGATGTGCTGTTGCTTAGTGTTTTTTCCTGAGTAGTTATGTCAAAATAATATGAACTG 60
consensus_2057#1      ---------------CTTAGTGTTTTTTCCTGAGTAGTTATGTCAAAATAATATGAATTG 45
consensus_2057#2      ------------------------------------------------------------
                                                                                  

consensus_2057#0      TAAAGAACGCGCTGGAGGAAGAACTTTGGTAGTGTATTCAGCAAAGAAACTATCGAAGAT 120
consensus_2057#1      TAAAGAACGCGCTTTAC-AAGAACTTTGGTAGTGTATTCAGCAAAGAAACTATCGAAGAT 104
consensus_2057#2      ------------------------------------------------------------
                                                                                  

consensus_2057#0      GCAGAACATGTTAAACATCGTGAAGGGGACGGCTCATGGCGTGGCTGAATACCTCACTCC 180
consensus_2057#1      GCAGAACATGTTAAACATCGTGAAGGGAACGGCTCTTGGCGTGGCTGAATACCTCACTCC 164
consensus_2057#2      -----------------ACGAGAAGGGAACGGAACTTGGCGCGGCGGAACACCNCACACC 43
                                        ** ****** ****  * ***** *** *** *** *** **

consensus_2057#0      AGTGCTGAAGGAATCCAAATTTAAAGAGACTGGAGTCATTACTCCAGAGGAGTTTGTAGC 240
consensus_2057#1      AGTGCTGAAGGAATCCAAATTTAAAGAGACTGGA-------------------------- 198
consensus_2057#2      AGGGCAGAAGGAANCCAAACCGAAAGAGACAGGA-------------------------- 77
                      ** ** ******* *****   ******** ***                          

consensus_2057#0      AGCTGGAGATTATCTGGNTCACCACTGCCCAACATGGAAATGGGCTTCAGGAGAGGAGGT 300
consensus_2057#1      --------------------------------------AATGGGCTTCAGGAGAGGAGGT 220
consensus_2057#2      ------------------------------------------GGCACCACTT-------- 87
                                                                ***  **           

consensus_2057#0      CAAAGGGAAGCCATATTTACCTGAGGATAAACAGTTTCTCTTGACGCGCAATGTTCCTTG 360
consensus_2057#1      CAAAGTGAAGCCATATTTACCTGAGGATATACAGTTTCTCTTGACACGCAATGTTCCTTG 280
consensus_2057#2      ----------TTTTTTTTTTCGAAGCACATGGAGATTACGTGGAT---CACCATTGCCAA 134
                                   * ***  *  ** * *   ** **   * **    **   ** *   

consensus_2057#0      TTACAAACGTTGTAGACAAATGGAGGACTCAGATGAGCTGGAAGCCATCATAGAGGAGGA 420
consensus_2057#1      TTACAAACGTTGTAAACAAATGGAGTACTCAGATGAGCTGGAAGCCATCATAGAGGAGGA 340
consensus_2057#2      ACATGGAAATGGGCTTCAGGAGAGGAGGTCAAA--------------------------- 167
                        *   *  * *    **   *  *   *** *                           

consensus_2057#0      TGATGGTGACGGGGGCTGGGTGGACACTTACCATAACTCGGCAGTTTTAGGAGTCACAGA 480
consensus_2057#1      TGATGGTGACGGGGGCTGGGTGGACACTTACCATAACTCGGCAGCTTTAGGAGTCACGGA 400
consensus_2057#2      ------------------------------------------------------------
                                                                                  

consensus_2057#0      TGCTGTGCAGGATATTTCACTAGATAATAACAAGGACAAGAATATGAATGCCACCTCTGC 540
consensus_2057#1      TGCTGTGCAGGATATTTCACTAGATAATAACAAGGACAAGAATATGAATGCCACCTCTGC 460
consensus_2057#2      ------------------------------------------------------------
                                                                                  

consensus_2057#0      AACATGTGCTGATGANGATGATGGAGACGACGATGATGGCGAAGCAGCAGATATGGAAGA 600
consensus_2057#1      AACATGTGCTGATGAGGATGATGGAGACGACGATGATGGCGAAGCAGCAGAT-------- 512
consensus_2057#2      ------------------------------------------------------------
                                                                                  

consensus_2057#0      GTAT 604
consensus_2057#1      ----
consensus_2057#2      ----

Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)