These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2075#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 682 fasta sequence [AGGAAAAGGGACTGATTGGACTTTGGTAACCTGTGTGACGACGGGCACCAACGTGTGGCCACTAACCCGAAAGCCAATGTGTGTGTGGGGTGTGCAGAGGGCCAGCAGCACATGCACAGACACAGAAGCGCACGTAGATTCACTCGTCTGAGGGGACATCATCTCTTCTTTCTTGTGTTCCTCATTCTCGTAGCACAATGCCGCATTTCAGAACCGCCATATTGTTTTTACAGGCTGCTCTGCTCGTTCCAGGAGTCAAAGTCCTTTTTTCTAAGGAGAATAATCAGATTTAAGTTTATTTACCAAGATCCAACTCGGCGTTGGGTCAATTGCTGCAGATTTTGCTAACGTTTAAAACTCACTCTCTGGAGGTCAATTATTTTTTAAAAATAGGGTGCTACATCCTTATTTGTTCAAATGTTTCTCTCATGGTCCCTTTTTATGTGTTTGTATATAAGAGAATCATTTTGGG-TTTTTTTGAGTTTTGTGATACCGGTGTGTTTAATTTGAATCGGTCCAGTTTAAGAATTTGTAGGAGATTTAGTTGAGCCTAATCCAAAGAAATCAGCAGCCGCCAATGAGATTTTTATGTGCTCTAAGAGGCAGTAGCCATCATTTCAGTGTTTTTCATCCATCCATCGATGCACTTTACAGATTCGGTTAATCAGAATGAACTATATTT] [+] EMBL CA330275 [AGGAAAAGGGACTGATTGGACTTTGGTAACCTGTGTGACGACGGGCACCAACGTGTGGCCACTAACCCGAAAGCCAATGTGTGTGTGGGGTGTGCAGAGGGCCAGCAGCACATGCACAGACACAGAAGCGCACGTAGATTCACTCGTCTGAGGGGACATCATCTCTTCTTTCTTGTGTTCCTCATTCTCGTAGCACAATGCCGCATTTCAGAACCGCCATATTGTTTTTACAGGCTGCTCTGCTCGTTCCAGGAGTCAAAGTCCTTTTTTCTAAGGAGAATAATCAGATTTAAGTTTATTTACCAAGATCCAACTCGGCGTTGGGTCAATTGCTGCAGATTTTGCTAACGTTTAAAACTCACTCTCTGGAGGTCAATTATTTTTTAAAAATAGGGTGCTACATCCTTATTTGTTCAAATGTTTCTCTCATGGTCCCTTTTTATGTGTTTGTTTTT GTGAATCATTTTGGGTTTTTTTTGAGTTTTGTGATACCGGTGTGTTTAATTTGAATCGGTCCAGTTTAAGAATTTGTAGGAGATTTAGT ] [-] EMBL CA331259 [ ATTTCAGAACCGCCATATTGTTTTTACAGGCTGCTCTGCTCGTTCCAGGAGTCAAAGTCCTTTTTTCTAAGGAGAATAATCAGATTTAAGTTTATTTACCAAGATCCAACTCGGCGTTGGGTCAATTGCTGCAGATTTTGCTAACGTTTAAAACTCACTCTCTGGAGGTCAATTATTTTTTAAAAATAGGGTGCTACATCCTTATTTGTTCAAATGTTTCTCTCATGGTCCCTTTTTATGTGTTTGTATATAAGAGAATCATTTTGGG TTTTTTTGAGTTTTGTGATACCGGTGTGTTTAATTTGAATCGGTCCAGTTTAAGAATTTGTAGGAGATTTAGTTGAGCCTAATCCAAAGAAATCAGCAGCCGCCAATGAGATTTTTATGTGCTCTAAGAGGCAGTAGCCATCATTTCAGTGTTTTTCATCCATCCATCGATGCACTTTACAGATTCGGTTAATCAGAATGAACTATATTT] consensusID : consensus_2075#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 480 fasta sequence [TTTTTTTTTTTCTTAGCCATTTTTTTTATCATCGGGCTAATGATTTGAGACCTCAGCAGAATATGCAGAGTAAAAACCCTGAAGCTCTTCAGGGGAAGCAACAGCAGACAAACACAGGAGACGTTATCCATCTGCCACAAAGAGGGACAAAAAAAGAGTTGTTTTTGACAATTAACACTTGAAATGATGAAGGCACCTGAAAACAGTTACACTAAATGTAAACTGTACTTTGGAGTTCCGTCTTTACCTCTCAAGATCTTCATTCAACTTTCTCTTCTCATGGACTGAACCACAACACTAACAAAGAGGAAGAACCTCAAATCAGAATTTAAAAGAAAGTAAATTTAAACTATTCAACGACTAAAACGTTTTGAGTTTAAATAAACCACTTACAAAGCTTGTTTACTTAAAATATAGTTCATTCTGATTAATAGAATCTGTAAAGTGCATCGATGGATGGATGAAAAACACTGAAATGAT] [+] EMBL CA332589 [TTTTTTTTTTTCTTAGCCATTTTTTTTATCATCGGGCTAATGATTTGAGACCTCAGCAGAATATGCAGAGTAAAAACCCTGAAGCTCTTCAGGGGAAGCAACAGCAGACAAACACAGGAGACGTTATCCATCTGCCACAAAGAGGGACAAAAAAAGAGTTGTTTTTGACAATTAACACTTGAAATGATGAAGGCACCTGAAAACAGTTACACTAAATGTAAACTGTACTTTGGAGTTCCGTCTTTACCTCTCAAGATCTTCATTCAACTTTCTCTTCTCATGGACTGAACCACAACACTAACAAAGAGGAAGAACCTCAAATCAGAATTTAAAAGAAAGTAAATTTAAACTATTCAACGACTAAAACGTTTTGAGTTTAAATAAACCACTTACAAAGCTTGTTTACTTAAAATATA ] [+] EMBL CA329807 [ ATTTTTTTTATCATCGTGCTAATGATTTGAGACCTCAGCAGAATATGCAGAGTAAAAACCCTGAAGCTCTTCAGGGGAAGCAACAGCAGACAAACACAGGAGACGTTATCCATCTGCCACAAAGAGGGACAAAAAAAGAGTTGTTTTTGACAATTAACACTTGAAATGATGAAGGCACCTGAAAACAGTTACACTAAATGTAAACTGTACTTTGGAGTTCCGTCTTTACCTCTCAAGATCTTCATTCAACTTTCTCTTCTCATGTACTGAACCACAACACTAACAAAGAGGAAGAACCTCAAATCAGAATTTAAAAGAAAGTAAATTTAAACTATTCAACGACTAAAACGTTTTGAGTTTAAATAAACCACTTACAAAGCTTGTTTACTTAAAATATAGTTCATTCTGATTAATAGAATCTGTAAAGTGCATCGATGGATGGATGAAAAACACTGAAATGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2075#0 AGGAAAAGGGACTGATTGGACTTTGGTAACCTGTGTGACGACGGGCACCAACGTGTGGCC 60 consensus_2075#1 ------------------------------------------------------------ consensus_2075#0 ACTAACCCGAAAGCCAATGTGTGTGTGGGGTGTGCAGAGGGCCAGCAGCACATGCACAGA 120 consensus_2075#1 ------------------------------------------------------------ consensus_2075#0 CACAGAAGCGCACGTAGATTCACTCGTCTGAGGGGACATCATCTCTTCTTTCTTGTGTTC 180 consensus_2075#1 ------------------------------------TTTTTTTTTTTCTTAGCCATTTTT 24 * * * ***** * ** consensus_2075#0 CTCATTCTCGTAGCA-CAATGCCGCATTTCAGAACCGCCATATTGTTTTTACAGGCTGCT 239 consensus_2075#1 TTTATCATCGGGCTAATGATTTGAGACCTCAG---CAGAATATGCAGAGTAAAAACCCTG 81 * ** *** * ** * **** * **** ** * * consensus_2075#0 CTGCTCGTTCCAGGAGTCAAAGTCCTTTTTTCTAAGGAGAA--TAATCAGATTTAAGTTT 297 consensus_2075#1 AAGCTCTTCAGGGGAAGCAACAGCAGACAAACACAGGAGACGTTATCCATCTGCCACAAA 141 **** * *** *** * * ****** ** ** * * consensus_2075#0 ATTTACCAAGATCCAACTCGGCGTTGG-GTCAATTGCTGCAGATTTTGCTAACGTTTAAA 356 consensus_2075#1 GAGGGACAAAAAAAGAGTTGTTTTTGACAATTAACACTTGAAATGATGAAGGCACCTGAA 201 *** * * * * *** * ** * ** ** * * ** consensus_2075#0 ACTCACT-CTCTGGAGGTCAATTATTTTTTAAAAATAGGGTGCTACATCCTTATTTGTTC 415 consensus_2075#1 AACAGTTACACTAAATGTAAACTGTACTTT--------GGAGTTCCGTCTTTACCTCTCA 253 * * * ** * ** ** * * *** ** * * * ** *** * * consensus_2075#0 AAATGTTTCTCTCATGGTCCCTTTTTATGTGTTTGTATATAAGAGAATCATTTTGGGTTT 475 consensus_2075#1 AGATCTTCATTCAACTTTCTCTTCTCATGGACTGAACCACAACACTAACAAAGAGGAAGA 313 * ** ** * * ** *** * *** * * ** * * ** ** consensus_2075#0 TTTTGAGTTTTGTGATACCGGTGTGTTTAATTTGAATCGGTCCA-GTTTAAGAATTTGTA 534 consensus_2075#1 ACCTCAAATCAGAATTTAAAAGAAAGTAAATTTAAACTATTCAACGACTAAAACGTTTTG 373 * * * * * * ***** ** ** * * *** * ** * consensus_2075#0 GGAGATTTAGTTGAGCCTAATCCAAAGAAATCAGCAGCCGCCAATGAGATTTTTATGTGC 594 consensus_2075#1 AG---TTTAAATAAACC--ACTTACAAAGCTTGT------TTACTTAAAATATAGTTCAT 422 * **** * * ** * * * * * * * * * * * * consensus_2075#0 TCTAAGAGGCAGTAGCCATCATTTCAGTGTTTTTCATCCATCCATCGATGCACTTTACAG 654 consensus_2075#1 TCTGATTAATAGAATCTGTAA----AGTG-----CATCGATGGATGGATGAAAAACACTG 473 *** * ** * * * * **** **** ** ** **** * ** * consensus_2075#0 ATTCGGTTAATCAGAATGAACTATATTT 682 consensus_2075#1 AAATGAT--------------------- 480 * * * |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |