These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2076#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 538 fasta sequence [CACGCAAGAAACGATCCAAGACGTACATCCTAAGCTCAAACAATGGCTGAGAATATTCAGGATAAGATCAAGGGCTACAGGACTGCTCCGTTTGACGCCAGGTTCCCCAACACCAACCAGACCCGCAACTGTTTCCAGAACTATCTGGACTTCCACAGGTGCAACAAGGCCCTTTCAGCCAAAGACCAGGATGTGTCTCCCTGTGACTGGTACCAGAGGGTTTACAAGAGTCTCTGCCCCATGAGCTGGGTTGCCAAATGGGACGAGCAGGTAGAGAGCGGGTCTTTTCCAGGGAAGATCTGAAATCCCCAGACTGCTGCTGACCAGGACAGTCTACTACATGATATTCTGTTACGCGTCGTTACTACCCATAATACTGATAACTCCAGTGATGTTCACATCAGCATCAAGAGTGATGTTATTAATAACATAAATACGCACAACTTTTTACCTGACTTGTCAAGGTGGAAAGTTACTTGTCCTGTTTCTTTTGTTTCTTTGACATTGGTTAATTAATAAATACAAAGTGGATTTTAAA] [+] EMBL CA341006 [CACGCAAGAAACGATCCAAGACGTACATCCTAAGCTCAAACAATGGCTGAGAATATTCAGGATAAGATCAAGGGCTACAGGACTGCTCCGTTTGACGCCAGGTTCCCCAACACCAACCAGACCCGCAACTGTTTCCAGAACTATCTGGACTTCCACAGGTGCAACAAGGCCCTTTCAGCCAAAGACCAGGATGTGTCTCCCTGTGACTGGTACCAGAGGGTTTACAAGAGTCTCTGCCCCATGAGCTGGGTTGCCAAATGGGACGAGCAGGTAGAGAGCGGGTCTTTTCCAGGGAAGATCTGAAATCCCCAGACTGCTGCTGACCAGGACAGTCTACTACATGATATTCTGTTACGCGTCGTTACTACCCATAATACTGATAACTCCAGTGATGTTCACATCAGCATCAAGAGTGATGTTATTAATAACATAAATACGCACAACTTTTTACCTGACTTGTCAAGGTGGAAAGTTACTTGTCCTGTTTCTT ] [+] EMBL CA845474 [ ACGTACATCCTACCCTCAAACAATGGCTGAGAATATTCAGGATAAGATCAAGGGCTACAGGACTGCTCCGTTTGACGCCAGGTTCCCCAACACCAACCAGACCCGCAACTGTTTCCAGAACTATCTGGACTTCCACAGGTGCAACAAGGCCCTTTCAGCCAAAGACCAGGATGTGTCTCCCTGTGACTGGTACCAGAGGGTTTACAAGAGTCTCTGTTCCATGAGCTGGGTTGCCAAATGGGACGAGCAGGTAGAGAGCGGGTCTTTTCCAGGGAAGATCTGAAATCCCCAGACTGCTGCTGACCAGGACAGTCTACTACATGATATTCTGTTACGCGTCGTTACTACCCATAATACTGATAACTCCAGTGATGTTCACATCAGCATCAAGAGTGATGTTATTAATAACATAAATACACACAACTTTTT ] [+] EMBL CA844545 [ TGCTGCTGACCAGGACAGTCTACTACATGATATTCTGTTACGCGTCGTTACTACCCATAATACTGATAACTCCAGTGATGTTCACATCAGCATCAAGAGTGATGTTATTAATAACATAAATACGCACAACTTTTTACCTGACTTGTCAAGGTGGAAAGTTACTTGTCCTGTTTCTTTTGTTTCTTTGACATTGGTTAATTAATAAATACAAAGTGGATTTTAAA] consensusID : consensus_2076#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 224 fasta sequence [ATAAGATCAAGGGCTACAGGACTGCTCCGTTTGACGCCAGGTTCCCCAACACCAACCAGACCCGCAACTGTTTCCAGAACTATCTGGACTTTCACCAGGGCAACAAGGCCCCTTTCAGCAAAGACCCAGATGTGGCCTCCTGTGCTGGGAACAGAGGGTTTACAGAAATCTCCTGCCCCCTGAGCTGGGTTTGCCAAAGGGGACAACCAGGTAAAAAACGCGGT] [+] EMBL CA846690 [ATAAGATCAAGGGCTACAGGACTGCTCCGTTTGACGCCAGGTTCCCCAACACCAACCAGACCCGCAACTGTTTCCAGAACTATCTGGACTTTCACCAGGGCAACAAGGCCCCTTTCAGCAAAGACCCAGATGTGGCCTCCTGTGCTGGGAACAGAGGGTTTACAGAAATCTCCTGCCCCCTGAGCTGGGTTTGCCAAAGGGGACAACCAGGTAAAAAACGCGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2076#0 CACGCAAGAAACGATCCAAGACGTACATCCTAAGCTCAAACAATGGCTGAGAATATTCAG 60 consensus_2076#1 ------------------------------------------------------------ consensus_2076#0 GATAAGATCAAGGGCTACAGGACTGCTCCGTTTGACGCCAGGTTCCCCAACACCAACCAG 120 consensus_2076#1 -ATAAGATCAAGGGCTACAGGACTGCTCCGTTTGACGCCAGGTTCCCCAACACCAACCAG 59 *********************************************************** consensus_2076#0 ACCCGCAACTGTTTCCAGAACTATCTGGACTTCCACAGGTGCAACAAGGCCCTTTCAGCC 180 consensus_2076#1 ACCCGCAACTGTTTCCAGAACTATCTGGACTTTCACCAGGGCAACAAGGCCCCTTTCAGC 119 ******************************** *** * ************ ** * consensus_2076#0 AAAGACCAGGATGTGTCTCCCTGTGACTGGTACCAGAGGGTTTACAAGAGTCTC-TGCCC 239 consensus_2076#1 AAAGACCCAGATGTGGCCTCCTGTG-CTGGGAACAGAGGGTTTACAGAAATCTCCTGCCC 178 ******* ****** * ****** **** * ************* * **** ***** consensus_2076#0 CATGAGCTGGGTT-GCCAAATGGGACGAGCAGGTAGAGAGCGGGTCTTTTCCAGGGAAGA 298 consensus_2076#1 CCTGAGCTGGGTTTGCCAAAGGGGACAACCAGGTAAAAAACGCGGT-------------- 224 * *********** ****** ***** * ****** * * ** * consensus_2076#0 TCTGAAATCCCCAGACTGCTGCTGACCAGGACAGTCTACTACATGATATTCTGTTACGCG 358 consensus_2076#1 ------------------------------------------------------------ consensus_2076#0 TCGTTACTACCCATAATACTGATAACTCCAGTGATGTTCACATCAGCATCAAGAGTGATG 418 consensus_2076#1 ------------------------------------------------------------ consensus_2076#0 TTATTAATAACATAAATACGCACAACTTTTTACCTGACTTGTCAAGGTGGAAAGTTACTT 478 consensus_2076#1 ------------------------------------------------------------ consensus_2076#0 GTCCTGTTTCTTTTGTTTCTTTGACATTGGTTAATTAATAAATACAAAGTGGATTTTAAA 538 consensus_2076#1 ------------------------------------------------------------ |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |