Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Takifugu rubripes
cluster # 2080 cluster # 2080       Sequences # 4       consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2080#0 length = 927 sequences # 4  
consensusID : consensus_2080#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 927
fasta sequence 
                              [CCAAAACTTGGGTCCCGGGCCCCCCCCGGGGGTTTTTTTTTCTTTTTTCATGTGGTATCATTTTATTTCATAAAAGAGGGAATGACAGCAAGCAATTTTCAGCAGTAGCACCTGATGATGTTTCAGTAGTTACTGGTCAGTGGGAGAAAAGCTGAAAACCGAAGATTTTGGTACCAGAGCAAAATGAAGAATTTGATTTGACCAAGTGTTCTGCACATTTGGGAGGTTCGCCGAACGATAGCGGCACGGCCTCATCTCCCCGTGCTCTCCGAAGACATTCTTCTCTGCTCCGCCGTTTGGGGAAGGGTCTCAGTAGCGGTAATGGTCGGGCTTGAAGGGTCCCTTGACGGGGAGGCCCAAGTATTTGGCCTGCTTGTCGGTCAGCTTGGTCAGCTTCACTCCAAGTTTGTCTAGATGGGCGGCTGCGACCTCCTCGTCCAACTTCTTGGGTAAGAAGTAGACTCCTAGAGGGTATTTGTCTGTGTGCGTCCACAACTCGATCTGAGCCAGAACCTGATTGGTGAAGGAGTTGCTCATGACGAAAGACGGGTGTCCCATGGCGCAGCCCAGGTTGACCAGGCGGCCCTCGGCCAGGATAATGACGTGACGGCCGTTTTTCAGAAGGAAGCGGCCAACCTGGGGCCTTGATGTTAACCTTTTCTGCGTTTTTGTTGAGCCAGCTAACGTCGATTTCGCAGTCAAAGTGTCCAATGTTGCAGACAATGGCGTCGTCCTTCATCTGCTCAAAGTGATGTCCCATAATGATGTCCTCGCAGCCGGTGGTGGTGACGAAAATGTTCCCCTCCTTACAGGCCTCGTCCATGGTGGTGACCTCGTAACCCTCCATGGCTGCCTGCAGGGCATTTATGGGATCAACCTCTGTGACGATGACACGAGCTCCAAAACCTCGCAGAGCCTGGACGCAGC]

[-] EMBL FR0057819            [CCAAAACTTGGGTCCCGGGCCCCCCCCGGGGGTTTTTTTTTCTTTTTTCATGTGGTATCATTTTATTTCATAAAAGAGGGAATGACAGCAAGCAATTTTCAGCAGTAGCACCTGATGATGTTTCAGTAGTTACTGGTCAGTGGGAGAAAAGCTGAAAACCGAAGATTTTGGTACCAGAGCAAAATGAAGAATTTGATTTGACCAAGTGTTCTGCACATTTGGGAGGTTCGCCGAACGATAGCGGCACGGCCTCATCTCCCCGTGCTCTCCGAAGACATTCTTCTCTGCTCCGCCGTTTGGGGAAGGGTCTCAGTAGCGGTAATGGTCGGGCTTGAAGGGTCCCTTGACGGGGAGGCCCAAGTATTTGGCCTGCTTGTCGGTCAGCTTGGTCAGCTCCTCCTCgt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CA333645             [                                                 ATGTGGTATCATTTTATTTCATAAAAGAGGGAATGACAGCAAGCAATTTTCAGCAGTAGCACCTGATGATGTTTCAGTAGTTACTGGTCAGTGGGAGAAAAGCTGAAAACCGAAGATTTTGGTACCAGAGCAAAATGAAGAATTTGATTTGACCAAGTGTTCTGCACATTTGGCTCGTGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CA329742             [                                                      GTATCATTTTATTTCATAAAAGAGGGAATGACAGCAAGCAATTTTCAGCAGTAGCACCTGATGATGTTTCAGTAGTTACTGGTCAGGGGGAGAAAAGCTGAAAACCGAAGATTTTGGTACCAGAGCAAAATGAAGAATTTGATTTGACCAAGTGTTCTGCACATTTGGGAGGTTCGCCGAACGATAGCGGCACGGCCTCATCTCCCCGTGCTCTCCGAAGACATTCTTTTCTGCTCCGCCGTTTGGGGAAGGGTCTCAGTAGCGGTAATGGTCGGGCTTGAAGGGTCCCTTGACGGGGAGGCCCAAGTATTTGGCCTGCTTGTCGGTCAGCTTGGTCAGCTTCACTCCAAGTTTGTCTAGATGGGCGGCTGCGACCTCCTCGTCCAACTTCTTGGGTAAGAAGTAGACTCCTAGAGGGTATTTGTCTGTGTGCGTCCACAACTCGATCTGAGCCAGAACCTGATTGGTGAAGGAGTTGCTCATGACGAAAGACGGGTGTCCCATGGCGCAGCCCAGGTTGACCAGGCGGCCCTCGGCCAGGATAATGACGTGACGGCCGTTTTTCAAAAGGAAGCGGCCAACCTGGGGCCTTGATGTTAACCTTTT                                                                                                                                                                                                                                                                           ]
[-] EMBL CA330473             [                                                                                                                                                                                                                                                                                                                                       GGGCTTGAAGGGTCCCTTGACGGGGAGGCCCAAGTATTTGGCCTGCTTGTCGGTCAGCTTGGTCAGCTTCACTCCAAGTTTGTCTAGATGGGCGGCTGCGACCTCCTCGTCCAACTTCTTGGGTAAGAAGTAGACTCCTAGAGGGTATTTGTCTGTGTGCGTCCACAACTCGATCTGAGCCAGAACCTGATTGGTGAAGGAGTTGCTCATGACGAAAGACGGGTGTCCCATGGCGCAGCCCAGGTTGACCAGGCGGCCCTCGGCCAGGATAATGACGTGACGGCCGTTTTTCAGAAGGTAGCGGTCAACCT GGGCCTTGATGTTAACCTTTTCTGCGTTTTTGTTGAGCCAGCTAACGTCGATTTCGCAGTCAAAGTGTCCAATGTTGCAGACAATGGCGTCGTCCTTCATCTGCTCAAAGTGATGTCCCATAATGATGTCCTCGCAGCCGGTGGTGGTGACGAAAATGTTCCCCTCCTTACAGGCCTCGTCCATGGTGGTGACCTCGTAACCCTCCATGGCTGCCTGCAGGGCATTTATGGGATCAACCTCTGTGACGATGACACGAGCTCCAAAACCTCGCAGAGCCTGGACGCAGC]




>consensus_2080#0
CCAAAACTTGGGTCCCGGGCCCCCCCCGGGGGTTTTTTTTTCTTTTTTCATGTGGTATCA
TTTTATTTCATAAAAGAGGGAATGACAGCAAGCAATTTTCAGCAGTAGCACCTGATGATG
TTTCAGTAGTTACTGGTCAGTGGGAGAAAAGCTGAAAACCGAAGATTTTGGTACCAGAGC
AAAATGAAGAATTTGATTTGACCAAGTGTTCTGCACATTTGGGAGGTTCGCCGAACGATA
GCGGCACGGCCTCATCTCCCCGTGCTCTCCGAAGACATTCTTCTCTGCTCCGCCGTTTGG
GGAAGGGTCTCAGTAGCGGTAATGGTCGGGCTTGAAGGGTCCCTTGACGGGGAGGCCCAA
GTATTTGGCCTGCTTGTCGGTCAGCTTGGTCAGCTTCACTCCAAGTTTGTCTAGATGGGC
GGCTGCGACCTCCTCGTCCAACTTCTTGGGTAAGAAGTAGACTCCTAGAGGGTATTTGTC
TGTGTGCGTCCACAACTCGATCTGAGCCAGAACCTGATTGGTGAAGGAGTTGCTCATGAC
GAAAGACGGGTGTCCCATGGCGCAGCCCAGGTTGACCAGGCGGCCCTCGGCCAGGATAAT
GACGTGACGGCCGTTTTTCAGAAGGAAGCGGCCAACCTGGGGCCTTGATGTTAACCTTTT
CTGCGTTTTTGTTGAGCCAGCTAACGTCGATTTCGCAGTCAAAGTGTCCAATGTTGCAGA
CAATGGCGTCGTCCTTCATCTGCTCAAAGTGATGTCCCATAATGATGTCCTCGCAGCCGG
TGGTGGTGACGAAAATGTTCCCCTCCTTACAGGCCTCGTCCATGGTGGTGACCTCGTAAC
CCTCCATGGCTGCCTGCAGGGCATTTATGGGATCAACCTCTGTGACGATGACACGAGCTC
CAAAACCTCGCAGAGCCTGGACGCAGC

clustalw multiple alignements is not computed in this case
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)