These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2089#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 983 fasta sequence [CTCTGCAGAGATCAAACGTGGATTCGTGTTGCGTGAGTAGAGAAGGTCATTCGTAAACAAAAGACATGGAGAATCTTGAGCGACGCGTCCAGACTGGGACTATGTCAGAGACACTACACGCGAACTGTCAATCGATTTCAGACATGGAGAGCGGTGTATCTGGAACAAAGTTCTTTGTCTGCGAGGCTTCTGAAACAAAAAACGCTCACATGGAATGGGTTTCCAAAATGAAATGTGTTGGACACACTCAAGTGAACATTCAGGAAGATGCAGATTATAATTTGGTTTTCTGTCCAGTCAAATCCCGAATCAAAACAGACATTGACAAGGCCCTGGAGGGACTCCCAGATAATAAAGCAGTAATTCTGGTGGTGATGCATCACACCTTTGATCCTGATCTGGTGATTGTAGAGAGCAGATTACAGGAGCTCCCTAGAAACGTCCGCCTCACTGTCGACTCCCTGTTCTATAGAGGCAGGCTCCTCGGGTGTAACCGCAACGATATTGCCTGGGATCAGATCCAGAAAAGTCTCAACATTACTATTCCTGAACCATCCTGGAGGAAGGGAGTGGTTGACTTATCTGGAACAAAGTTCTTTGACTACATGGCTTCTGAAACACGAAACAAGCTCATGGGATGGGTTTCCAAAATGCCATCCTGGTGGAAGAGACTGTTTAACTTTCCACGGCTGGGTAAAGGTCAGACGGCCGGTGGTGTCGGGAAACGTCTAAACCTCTTTCAAGGACAAAAGGACACAGTAGAGACACCAGACCTCAAGAAGCTGTAGTAATTAAGATCTCTGTGAGAGGACGGATATTTAGGATGTGTCCTGGTGCACGTTTAATCACCAGAATTTGAACTGTGTGATGTTTTTGAATCTAAAATATTGGATTCTAGAATTAGGAATTGTTACATTTCACAAATTTACACGTCACTTCCTGGTTGTGAGGAAGTACCGGTATTCAAATAATAAAGAACTTCT] [+] EMBL BU806142 [CTCTGCAGAGATCAAACGTGGATTCGTGTTGCGTGAGTAGAGAAGGTCATTCGTAAACAAAAGACATGGAGAATCTTGAGCGACGCGTCCAGACTGGGACTATGTCAGAGACACTACACGCGAACTGTCAATCGATTTCAGACATGGAGAGCGGTGTATCTGGAACAAAGTTCTTTGTCTGCGAGGCTTCTGAAACAAAAAACGCTCACATGGAATGGGTTTCCAAAATGAAATGTGTTGGACACACTCAAGTGAACATTCAGGAAGATGCAGATTATAATTTGGTTTTCTGTCCAGTCAAATCCCGAATCAAAACAGACATTGACAAGGCCCTGGAGGGACTCCCAGATAATAAAGCAGTAATTCTGGTGGTGATGCATCACACCTTTGATCCTGATCTGGTGATTGTAGAGAGCAGATTACAGGAGCTCCCTAGAAACGTCCGCCTCACTGTCGACTCCCTGTTCTATAGAGGCAGGCTCCTCGGGTGTAACCGCAACGATATTGCCTGGGATCAGATCCAGAAAAGTCTCAACATTCCTATTCCTAAACCATCCTGGTGGATGAGAc ] [-] EMBL CA332542 [ TGGTGATTGTAGAGAGCAGATTACAGGAGCTCCCTAGAAACGTCCGCCTCACTGTCGACTCCCTGTTCTATCAAGGCAGGCTCCTCGGGTGTAACCGCAACGATATTGCCTGGAATCAGATCCAGAAAAGTCTCAACATTACTATTCCTGAACCATCCTTGACGAAGGCAGTGGTTGACTTATCTGGAACAAAGTTCTTTGACTACATGGCTTCTGAAACACGAAACAAGCTCATGGGATGGGTTTCCAAAATGCCATCCTGGTGGAAGAGACTGTTTAACTTTCCACGGCTGGGTAAAGGTCAGACGGCCGGTGGTGTCGGGAAACGTCTAAACCTCTTTCAAGGACAAAAGGACACAGTAGAGACACCAGACCTCAAGAAGCTGTAGTAATTAAGATCTCTGTGAGAGGACGGATATTTAGGATGTGTCCTGGTGCACGTTTAATCACCAGAATTTGAACTGTGTGATGTTTTTGAATCTAAAATATTGGATTCTAGAATTAGGAATTGTTACATTTCACAAATTTACACGTCACTTCCTGGTTGTGAGGAAGTACCGGTATTCAAATAATAAAGAACTTCT] consensusID : consensus_2089#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 795 fasta sequence [TTCTTTGCCAGTCTAAGCTTTTTCATTATAACAGAGACAACAGAGACATGGAGAATCTTGTATCTGGAACAAAGTTCTTTGCCTATGTGGCTTCTGAAACAAAAAACGCTCACATGGAATGGGTTTCCAAAATGAAACGTGTTGGACTACTTCTGTAGTGAACATTCAGGAAGATGCAGATTATTATTTGGTTTTCTGTCCAGTCAAATCCCGAATCAAAACAGACATTGACGAGGCCCTGGAGGGACTCCCAGATAATAAAGCAGTAATTCTGGTGGTGATGCATCACACCTTTGATCCTGATCTGGTGATTGTAGAGAGCAGATTACAGGAGCTCCCTAGAAACGTCCGCCTCACTGTCGACTCCCTGTTCTATCAAGGCAGGCTCCTCGGGTGTAACCGCAACGATATTGCCTGGAATCAGATCAAGAAAAGTCTCAACATTCCTGTTCCTGAACCATCCTGGAGGAAGGGAGCGGTTGACTGTGAGTATTATTTACACCTGGATCCTCATACCTGAAATACCTCTGAAGGCGTCACCATGCTGCTTTTCTTTATTCAGATCTGGTGAAACACAAGGAACTGATGCCAGGCATCGCTGTTGTTATTGTGTTGGTGATTCTTCTCATTGTTATTGTCAGTTCCACGGCTGGGTAAGGTCAGCTGGCCGGTGGTGTCGGGAAACGTCCAAACCTTATTCAAGGACAAAAGGACACAGTAGAGACACCAGACCTCAAAGGAAGCTGTAGTAATTAAGATCTCTGTGACAGGACGGGTATTTAGGATGTGTCCTGG] [+] EMBL CA589308 [TTCTTTGCCAGTCTAAGCTTTTTCATTATAACAGAGACAACAGAGACATGGAGAATCTTGTATCTGGAACAAAGTTCTTTGCCTATGTGGCTTCTGAAACAAAAAACGCTCACATGGAATGGGTTTCCAAAATGAAACGTGTTGGACTACTTCTGTAGTGAACATTCAGGAAGATGCAGATTATTATTTGGTTTTCTGTCCAGTCAAATCCCGAATCAAAACAGACATTGACGAGGCCCTGGAGGGACTCCCAGATAATAAAGCAGTAATTCTGGTGGTGATGCATCACACCTTTGATCCTGATCTGGTGATTGTAGAGAGCAGATTACAGGAGCTCCCTAGAAACGTCCGCCTCACTGTCGACTCCCTGTTCTATCAAGGCAGGCTCCTCGGGTGTAACCGCAACGATATTGCCTGGAATCAGATCCTGAAAAGTCTCAACATTCCTATTCCTGAACCATCCTGGAGGATGAGACCGTTTAAC ] [+] EMBL FR0055838 [ CTCCCTAGAAACGTCCGCCTCACTGTCGACTCCCTGTTCTATCAAGGCAGGCTCCTCTGGTGTAACCGCAACGATATTGCCTGGAATCAGATCAAGAAAACTTTCAACATTCCTGTTCCTGAACCATCCTGGAGGAAGGCAGTGGTTGACTGTGAGTATTATTTACACCTGGATCCTCATACCTGAAATACCTCTGAAGGCGTCACCATGCTGCTTTTCTTTATTCAGATCTGGTGAAACACAAGGAACTGATGCCAGGCATCGCTGTTGTTATTGTGTTGGTGATTCTTCTCATTGTTATTGTCAGTTCCACGGCTGGGTAAGGTCAGCTGGCCGGTGGTGTCGGGAAACGTCCAAACCTTATTCAAGGACAAAAGGACACAGTAGAGACACCAGACCTCAAAGGAAGCTGTAGTAATTAAGATCTCTGTGACAGGACGGGTATTTAGGATGTGTCCTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2089#0 CTCTGCAGAGATCAAACGTGGATTCGTGTTGCGTGAGTAGAGAAGGTCATTCGTAAACAA 60 consensus_2089#1 ------------------------------------------------------------ consensus_2089#0 AAGACATGGAGAATCTTGAGCGACGCGTCCAGACTGGGACTATGTCAGAGACACTACACG 120 consensus_2089#1 --------------------------------TTCTTTGCCA-GTCTAAGCTTTTTCATT 27 * * *** ** * ** consensus_2089#0 CGAACTGTCAATCGATTTCAGACATGGAGAGCGGTGTATCTGGAACAAAGTTCTTTGTCT 180 consensus_2089#1 ATAACAG--AGACAACAG-AGACATGGAGAATCTTGTATCTGGAACAAAGTTCTTTGCCT 84 *** * * * * *********** *********************** ** consensus_2089#0 GCGAGGCTTCTGAAACAAAAAACGCTCACATGGAATGGGTTTCCAAAATGAAATGTGTTG 240 consensus_2089#1 ATGTGGCTTCTGAAACAAAAAACGCTCACATGGAATGGGTTTCCAAAATGAAACGTGTTG 144 * ************************************************* ****** consensus_2089#0 GACACACTCA--AGTGAACATTCAGGAAGATGCAGATTATAATTTGGTTTTCTGTCCAGT 298 consensus_2089#1 GACTACTTCTGTAGTGAACATTCAGGAAGATGCAGATTATTATTTGGTTTTCTGTCCAGT 204 *** ** **************************** ******************* consensus_2089#0 CAAATCCCGAATCAAAACAGACATTGACAAGGCCCTGGAGGGACTCCCAGATAATAAAGC 358 consensus_2089#1 CAAATCCCGAATCAAAACAGACATTGACGAGGCCCTGGAGGGACTCCCAGATAATAAAGC 264 **************************** ******************************* consensus_2089#0 AGTAATTCTGGTGGTGATGCATCACACCTTTGATCCTGATCTGGTGATTGTAGAGAGCAG 418 consensus_2089#1 AGTAATTCTGGTGGTGATGCATCACACCTTTGATCCTGATCTGGTGATTGTAGAGAGCAG 324 ************************************************************ consensus_2089#0 ATTACAGGAGCTCCCTAGAAACGTCCGCCTCACTGTCGACTCCCTGTTCTATAGAGGCAG 478 consensus_2089#1 ATTACAGGAGCTCCCTAGAAACGTCCGCCTCACTGTCGACTCCCTGTTCTATCAAGGCAG 384 **************************************************** ****** consensus_2089#0 GCTCCTCGGGTGTAACCGCAACGATATTGCCTGGGATCAGATCCAGAAAAGTCTCAACAT 538 consensus_2089#1 GCTCCTCGGGTGTAACCGCAACGATATTGCCTGGAATCAGATCAAGAAAAGTCTCAACAT 444 ********************************** ******** **************** consensus_2089#0 TACTATTCCTGAACCATCCTGGAGGAAGGGAGTGGTTGACT--------TATCTGGAACA 590 consensus_2089#1 TCCTGTTCCTGAACCATCCTGGAGGAAGGGAGCGGTTGACTGTGAGTATTATTTACACCT 504 * ** *************************** ******** *** * * * consensus_2089#0 AAGTTCTT-TGACTACATGGCTTCTGAAA----CACGAAAC------------------- 626 consensus_2089#1 GGATCCTCATACCTGAAATACCTCTGAAGGCGTCACCATGCTGCTTTTCTTTATTCAGAT 564 * ** * ** * * ****** *** * * consensus_2089#0 ------AAGCTCATGGGATGGGTTTCCAAAAT----GCCATCCTGGTGGAAGAGACTGTT 676 consensus_2089#1 CTGGTGAAACACAAGGAACTGATGCCAGGCATCGCTGTTGTTATTGTGTTGGTGATTCTT 624 ** * ** ** * * * * ** * * * *** * ** * ** consensus_2089#0 -TAACT-----------TTCCACGGCTGGGTAAAGGTCAGACGGCCGGTGGTGTCGGGAA 724 consensus_2089#1 CTCATTGTTATTGTCAGTTCCACGGCTGGGTAA-GGTCAGCTGGCCGGTGGTGTCGGGAA 683 * * * **************** ****** ****************** consensus_2089#0 ACGTCTAAACCTCTTTCAAGGACAAAAGGACACAGTAGAGACACCAGACCTCAA--GAAG 782 consensus_2089#1 ACGTCCAAACCTTATTCAAGGACAAAAGGACACAGTAGAGACACCAGACCTCAAAGGAAG 743 ***** ****** **************************************** **** consensus_2089#0 CTGTAGTAATTAAGATCTCTGTGAGAGGACGGATATTTAGGATGTGTCCTGGTGCACGTT 842 consensus_2089#1 CTGTAGTAATTAAGATCTCTGTGACAGGACGGGTATTTAGGATGTGTCCTGG-------- 795 ************************ ******* ******************* consensus_2089#0 TAATCACCAGAATTTGAACTGTGTGATGTTTTTGAATCTAAAATATTGGATTCTAGAATT 902 consensus_2089#1 ------------------------------------------------------------ consensus_2089#0 AGGAATTGTTACATTTCACAAATTTACACGTCACTTCCTGGTTGTGAGGAAGTACCGGTA 962 consensus_2089#1 ------------------------------------------------------------ consensus_2089#0 TTCAAATAATAAAGAACTTCT 983 consensus_2089#1 --------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |