These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_210#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 536 fasta sequence [GCGAGGAAACGCCGTTTATTCGCGCTCGGCGCCGGTGCGGCGGCCCACATTCGCTCGTTGTTGTGCATCGTTTCTAAGGCAACGCGGAGGACCAAGCGGGCGTCTGCGACTGGATCCGGAGGCTGTGGCCAGGATCTTTCTGACGGTTCCATCGGCTTGGTTAAAGGCAGCATGTTACAGGACTCAGACACTCACACACGCTACAACGGTGACCGTTTCCCGATGATTCGCCGCAGTCGCTCGGTTAAAATTCGATTTCATCACAGCAATAAATTAAAAGCCAAAAGCGCCCCCGTTTTAGCCTCGCGGCAGCGTTCTGATCAGTCGTTTACAGAGAAACGCCGAAACCGGGGACAGATTAACACGCACGACGAGCAACTTGAAAACTTTACAGTGCAGCGCGTACAAATAAAGTTGTACAAGGTCTCAAATCTGCATATTTTGAAGGAATAGACATTTTGGCTAATATGCATAACTGGTCGTACTGTGAGGTAGATCTGGAGAGAGGCTGTACGCTATGCTAGGCTAACGCTAGG] [+] EMBL CA329815 [GCGAGGAAACGCCGTTTATTCGCGCTCGGCGCCGGTGCGGCGGCCCACATTCGCTCGTTGTTGTGCATCGTTTCTAAGGCAACGCGGAGGACCAAGCGGGCGTCTGCGACTGGATCCGGAGGCTGTGGCCAGGATCTTTCTGACGGTTCCATCGGCTTGGTTAAAGGCAGCATGTTACAGGACTCAGACACTCACACACGCTACAACGGTGACCGTTTCCCGATGATTCGCCGCAGTCGCTCGGTTAAAATTCGATTTCATCACAGCAATAAATTAAAAGCCAAAAGCGCCCCCGTTTTAGCCTCGCGGCAGCGTTCTGATCAGTCGTTTACAGAGAAACGCCGAAACCGGGGACAGATTAACACGCACGACGAGCAACTTGAAAACTTTACAGTGCAGCGCGTACAAATAAAGTTGTACAAGGTCTCAAATCTGCATATTTTGAAGGAATAGACATTTTGGCTAATATGCATAACTGGTCGTACTGTGAGGTAGATCTGGAGAGAGGCTGTACGCTATGCTAGGCTAACGCTAGG] consensusID : consensus_210#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 462 fasta sequence [AGGAATAGATTGACATTTTGGGAAATGTGCTTTCTTGCTGAGAGTTAGACGAGAAGTAGCCAAATAAATATGTAAGGCGGCTCTGGGCGGAGCTAATAGCTGGGCGGAGCCAATAGCACACACCAGCATATTTAAGGTTCGTTGCTGTCAATGGTTAACTGGACTGCTCAGTAAATTTGACCCGTTTGGCTGGTGTTGCCCACTTTTTCCTCACTGAACAGAGGTGTTTACAAGAGCCACCTAAACTGCACTGTTGAGATCCCTCCCCGGGCTGCTTGACCCCCCCCACCCCACTCATTTACACCTTGACCCTTATGGCCCTGAAGGGTGACAGGCTGGATTTCTCTCAGGAACGGCTCCAAAGCCAAACCTCCTAGCGGTAGCCTAGCATAGCGTACAGCCTCTCTCCAGATCTAACTCACAGTACGAGCAGTTATGCATATTAGCCAAAATGTCTATTCC] [+] EMBL FR0055273 [AGGAATAGATTGACATTTTGGGAAATGTGCTTTCTTGCTGAGAGTTAGACGAGAAGTAGCCAAATAAATATGTAAGGCGGCTCTGGGCGGAGCTAATAGCTGGGCGGAGCCAATAGCACACACCAGCATATTTAAGGTTCGTTGCTGTCAATGGTTAACTGGACTGCTCAGTAAATTTGACCCGTTTGGCTGGTGTTGCCCACTTTTTCCTCACTGAACAGAGGTGTTTACAAGAGCCACCTAAACTGCACTGTTGAGATCCCTCCCCGGGCTGCTTGACCCCCCCCACCCCACTCATTTACACCTTGACCCTTATGGCCCTGAAGGGTGACAGGCTGGATTTCTCTCAGGAACGGCTCCAAAGCCAAACCTCCTAGCGGTAGCCTAGCATAGCGTACAGCCTCTCTCCAGATCTAACTCACAGTACGAGCAGTTATGCATATTAGCCAAAATGTCTATTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_210#0 GCGAGGAAACGCCGTTTATTCGCGCTCGGCGCCGGTGCGGCGGCCCACATTCGCTCGTTG 60 consensus_210#1 ----------------------------------AGGAATAGATTGACATTT--TGGGAA 24 * * ***** * * consensus_210#0 TTGTGCATCGTTTCTAAGGC---AACGCGGAGGA-CCAAGCGGGCGTCT---GCGACTGG 113 consensus_210#1 ATGTGCTTTCTTGCTGAGAGTTAGACGAGAAGTAGCCAAATAAATATGTAAGGCGGCTCT 84 ***** * ** ** ** *** * ** * **** * * *** ** consensus_210#0 ATCCGGAGGCTGTGGCCAGGATCTTTCTGACGGTTCCATCGGCTTGGTTAAAGGCAGCAT 173 consensus_210#1 GGGCGGAGCTAATAGCTGGGCGGAGCCAATAGCACACACCAGCATATTTAAGGTTCGTTG 144 ***** * ** ** * * ** * ** * **** * * consensus_210#0 GTTACAGGACTCAGACACTCACACACGCTACAACGGTGACCGTTTC--CCGATGATTCGC 231 consensus_210#1 CTGTCAATGGTTA---ACTGGACTGCTCAGTAAATTTGACCCGTTTGGCTGGTGTTGCCC 201 * ** * * *** * * ** ***** ** * * ** * * * consensus_210#0 CGCAGTCGCTCGGTTAAAATTCGATTTCATCACAGCAATAAATTAAAAGCCAAAAGCGCC 291 consensus_210#1 ACTTTTTCCTCACTGAACAGAGGTGTTTACAAGAGCCACCTAAACTGCACTGTTGAGATC 261 * *** * ** * * ** * * *** * * * * consensus_210#0 CCCGTTTTAGCCTCGCGGCAGCGTTCTGATCAGTCGTTTACAGAGAAAC-------GCCG 344 consensus_210#1 CCTCCCCGGGCTGCTTGACCCCCCCCACCCCACTCATTTACACCTTGACCCTTATGGCCC 321 ** ** * * * * * ** ** ****** ** *** consensus_210#0 AAACCGGGGACAGATTAACACGCACG-ACGAGCAACTTGAAAACTTTACAGTGCAGCGCG 403 consensus_210#1 TGAAGGGTGACAGGCTGGATTTCTCTCAGGAACGGCTCCAAAGCCAAACCTCCTAGCGGT 381 * ** ***** * * * * ** * ** *** * ** **** consensus_210#0 TACAAATAAAGTTGTACAAGGTCTC---AAATCTG---CATATTTTGAAGGAATAGACAT 457 consensus_210#1 AGCCTAGCATAGCGTACAGCCTCTCTCCAGATCTAACTCACAGTACGAGCAGTTATGCAT 441 * * * ***** **** * **** ** * * ** ** *** consensus_210#0 TTTGGCTAATATGCATAACTGGTCGTACTGTGAGGTAGATCTGGAGAGAGGCTGTACGCT 517 consensus_210#1 ATTAGCCAAAATGTCTATTCC--------------------------------------- 462 ** ** ** *** ** consensus_210#0 ATGCTAGGCTAACGCTAGG 536 consensus_210#1 ------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |