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Takifugu rubripes
cluster # 2116 cluster # 2116       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2116#0 length = 950 sequences # 3  
consensus_2116#1 length = 569 sequences # 1  

consensusID : consensus_2116#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 950
fasta sequence
                              [ACGCTGAGAAGCGGTCTGGTCAGCCGGTGCCGCTCGGCTAACATGGGCCTTAAAATTGGGAATTAAGACCTCAAACCAGATTTCTCTATGATCCAGACAATCATACGGCGAGATCTACACTGTTCTTTTCCAACAAGAGGTGAGCCATGGCTGAACCCAACGCGGCACGTCCCCAGAGGAAGATGTCCACGGCTGGGGAGAGCGTGTACAAGGTGCTAGGCCTGGAAAAAGGTGCGTCGGCTGGAGGACATCAAGAAAGCTTACAGGAAGTTGGCGCTGAAATATCACCCGGATAAGAACCCAGACAACCCAGAGGCGGCGGAGAAGTTTAAGGAGATTAACAACGCCAACTCCATCCTGAACGATGAGGCCAAGAGGAGGATCTACGACGAGTACGGCTCCATGGGCCTTTACGTGTCTGAGCAGTTTGGAGAGGAGAGCGTCAAATATTACTTCCTCATGTCCAAGTGGTGGTTTAAGGGCCTGGTTCTCTGCTGCACGTTGTTCACGTGCTGCTGCTGTTGCTGCTGCTGCTGCTTCTGCTGCGGGAAGTGCAAACCGCCCGACGACGACGAGAACTACCAGTACGTGGACCCCGAGGACCTGGAGGCCCAGATCAGAGCAGAGCAGGACGATGGTTGCACAGTTATCATAGACCAGCCTACATCTAACGTGGGCCTGAACAGCCCAGAAGGTCAGAGTCAGCCGATCCCGCTGGCCATGGCGGCGAGCAGCCCTGCAGGCGAGGAGCACTCTGGAGACGCCCTCCCAGAGTCCCAGTGACTCGAAAGTGACCACCTCCATGTTCCTGGAGCAGCAGAAGCAGCTCGTTATGATCCAGCCACCCAGCCTGCTGCCAGAGCCACGGAGATCCAGAAGCCCCCAGTCGGGGCCCACCCCTCAATCCTGACCCAACAGAACCCACCCGCTCCAGCCACTGGACAGCGCCT]

[+] EMBL BU805496             [ACGCTGAGAAGCGGTCTGGTCAGCCGGTGCCGCTCGGCTAATATGGGCCTTAAAATTGGGAATTAAGACCTCAAACCAGATTTCTCTATGATCCAGACAATCATACGGCGAGATCTACACTGTTCTTTTCCAACAAGAGGTGAGCCATGGCTGAACCCAACGCGGCACGTCCCCAGAGGAAGATGTCCACGGCTGGGGAGAGCGTGTACAAGGTGCTAGGCCTGGAAAAAGGTGCGTCGGC GGAGGACATCAAGAAAGCTTACAGGAAGTTGGCGCTGAAATATCACCCGGATAAGAACCCAGACAACCCAGAGGCGGCGGAGAAGTTTAAGGAGATTAACAACGCCAACTCCATCCTGAACGATGAGGCCAAGAGGGGGATCTACGACGAGTACGGCTCCATGGGCCTTTACGTGTCTGAGCAGTTTGGAGAGGAGAGCGTCAAATATTACTTCCTCATGTCCAAGTGGTGGTTTAAGGGCCTGGTTCTCTGCTGCACGTTGTTCACGTGCTGCTGCTGTTGCTGCTGCTGCTGCTTCTGCTGCGGGAAGTGCAAACCGCCCGACGACGACGAGAACTACCAGTACGTGGA                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CA589127             [                                      TACCATGGGCCTTAAAATTGGGAATTAAGACTTCAAACCAGATTTCTCTATGATCCAGACAATCATACGGCGAGATCTACACTGTTCTTTTCCAACAAGAGGTGAGCCATGGCTGAACCCAACGCGGCACGTCCCCAGAGGAAGATGTCCACGGCTGGGGAGAGCGTGTACAAGGTGCTAGGCCTGGAAAAAGGTGCGTCGGCTTTTTGTCATCAAGAAAGCTTACAGGAAGTTGGCGCTGAAATATCACCCGGATAAGAACCCAGACAACCCAGAGGCGGCGGAGAAGTTTAAGGAGATTAACAACGCCAACTCCATCCTGAACGATGAGGCCAAGAGGAGGATCTACGACGAGTACGGCTCCATGGGCCTTTACGTGTCTGAGCAGTTTGGAGAGGAGAGCGTCAAATATTACTTCCTCATGTCCAAGTGGTGGTTTAAGGGCCTGGTTCTCTGCTGCACGTTGTTCACGTGCTGCTGCTGTTGCTGCTGCTGCTGCTTCTGCTACGGGAAGTGC                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL BU807550             [                                                                                                                                                                                                                                                                                                                                                                                     AGAGGAGGATCTACGACGAGTACGGCTCCATGGGCCTTTACGTGTCTGAGCAGTTTGGAGAGGAGAGCGTCAAATATTACTTCCTCATGTCCAAGTGGTGGTTTAAGGGCCTGGTTCTCTGCTGCACGTTGTTCACGTGCTGCTGCTGTTGCTGCTGCTGCTGCTTCTGCTGCGGGAAGTGCAAACCGCCCGACGACGACGAGAACTACCAGTACGTGGACCCCGAGGACCTGGAGGCCCAGATCAGAGCAGAGCAGGACGATGGTTGCACAGTTATCATAGACCAGCCTACATCTAACGTGGGCCTGAACAGCCCAGAAGGTCAGAGTCAGCCGATCCCGCTGGCCATGGCGGCGAGCAGCCCTGCAGGCGAGGAGCACTCTGGAGACGCCCTCCCAGAGTCCCAGTGACTCGAAAGTGACCACCTCCATGTTCCTGGAGCAGCAGAAGCAGCTCGTTATGATCCAGCCACCCAGCCTGCTGCCAGAGCCACGGAGATCCAGAAGCCCCCAGTCGGGGCCCACCCCTCAATCCTGACCCAACAGAACCCACCCGCTCCAGCCACTGGACAGCGCCT]


>consensus_2116#0 ACGCTGAGAAGCGGTCTGGTCAGCCGGTGCCGCTCGGCTAACATGGGCCTTAAAATTGGG AATTAAGACCTCAAACCAGATTTCTCTATGATCCAGACAATCATACGGCGAGATCTACAC TGTTCTTTTCCAACAAGAGGTGAGCCATGGCTGAACCCAACGCGGCACGTCCCCAGAGGA AGATGTCCACGGCTGGGGAGAGCGTGTACAAGGTGCTAGGCCTGGAAAAAGGTGCGTCGG CTGGAGGACATCAAGAAAGCTTACAGGAAGTTGGCGCTGAAATATCACCCGGATAAGAAC CCAGACAACCCAGAGGCGGCGGAGAAGTTTAAGGAGATTAACAACGCCAACTCCATCCTG AACGATGAGGCCAAGAGGAGGATCTACGACGAGTACGGCTCCATGGGCCTTTACGTGTCT GAGCAGTTTGGAGAGGAGAGCGTCAAATATTACTTCCTCATGTCCAAGTGGTGGTTTAAG GGCCTGGTTCTCTGCTGCACGTTGTTCACGTGCTGCTGCTGTTGCTGCTGCTGCTGCTTC TGCTGCGGGAAGTGCAAACCGCCCGACGACGACGAGAACTACCAGTACGTGGACCCCGAG GACCTGGAGGCCCAGATCAGAGCAGAGCAGGACGATGGTTGCACAGTTATCATAGACCAG CCTACATCTAACGTGGGCCTGAACAGCCCAGAAGGTCAGAGTCAGCCGATCCCGCTGGCC ATGGCGGCGAGCAGCCCTGCAGGCGAGGAGCACTCTGGAGACGCCCTCCCAGAGTCCCAG TGACTCGAAAGTGACCACCTCCATGTTCCTGGAGCAGCAGAAGCAGCTCGTTATGATCCA GCCACCCAGCCTGCTGCCAGAGCCACGGAGATCCAGAAGCCCCCAGTCGGGGCCCACCCC TCAATCCTGACCCAACAGAACCCACCCGCTCCAGCCACTGGACAGCGCCT



consensusID : consensus_2116#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 569
fasta sequence
                              [TGTTCCTGACACAGAAGGAGCGGCAATAACGTCTGAGGACATTGTGGCCATCATCATTGACTCCAGTCCTGCCAACCAGATGGGTCCATCTTGTAAATTAAAAAAGAGTTCCACGGGAGTTTAATCCACAAACAGGTGAGCCATGGCTGAACCCAACGCGGCACGTCCCCAGAGGAAGATGTCCACGGCTGGGGAGAGCGTGTACAAGGTGCTAGGCCTGGAAAAAGGTGCGTCGGCGGAGGACATCAAGAAAGCTTACAGGAAGTTGGCGCTGAAATATCACCCGGATAAGAACCCAGACAACCCAGAGGCGGCGGAGAAGTTTAAGGAGATTAACAACGCCAACTCCATCCTGAACGATGAGGCCAAGAGGAGGATCTACGACGAGTACGGCTCCATGGGCCTTTACGTGTCTGAGCAGTTTGGAGAGGAGAGCGTCAAATATTGCTTCCTCATGTCCAAGTGGTGGTTTAAGGGCCTGGTTCTCTGCTGCACGTTGTTCACGTGCTGCTGCTGTTGCTGCTGCTGCTGCTTCTGCTGCGGGAAGTGCAAACCGCCCGACGACGACG]

[+] EMBL CA332746             [TGTTCCTGACACAGAAGGAGCGGCAATAACGTCTGAGGACATTGTGGCCATCATCATTGACTCCAGTCCTGCCAACCAGATGGGTCCATCTTGTAAATTAAAAAAGAGTTCCACGGGAGTTTAATCCACAAACAGGTGAGCCATGGCTGAACCCAACGCGGCACGTCCCCAGAGGAAGATGTCCACGGCTGGGGAGAGCGTGTACAAGGTGCTAGGCCTGGAAAAAGGTGCGTCGGCGGAGGACATCAAGAAAGCTTACAGGAAGTTGGCGCTGAAATATCACCCGGATAAGAACCCAGACAACCCAGAGGCGGCGGAGAAGTTTAAGGAGATTAACAACGCCAACTCCATCCTGAACGATGAGGCCAAGAGGAGGATCTACGACGAGTACGGCTCCATGGGCCTTTACGTGTCTGAGCAGTTTGGAGAGGAGAGCGTCAAATATTGCTTCCTCATGTCCAAGTGGTGGTTTAAGGGCCTGGTTCTCTGCTGCACGTTGTTCACGTGCTGCTGCTGTTGCTGCTGCTGCTGCTTCTGCTGCGGGAAGTGCAAACCGCCCGACGACGACG]


>consensus_2116#1 TGTTCCTGACACAGAAGGAGCGGCAATAACGTCTGAGGACATTGTGGCCATCATCATTGA CTCCAGTCCTGCCAACCAGATGGGTCCATCTTGTAAATTAAAAAAGAGTTCCACGGGAGT TTAATCCACAAACAGGTGAGCCATGGCTGAACCCAACGCGGCACGTCCCCAGAGGAAGAT GTCCACGGCTGGGGAGAGCGTGTACAAGGTGCTAGGCCTGGAAAAAGGTGCGTCGGCGGA GGACATCAAGAAAGCTTACAGGAAGTTGGCGCTGAAATATCACCCGGATAAGAACCCAGA CAACCCAGAGGCGGCGGAGAAGTTTAAGGAGATTAACAACGCCAACTCCATCCTGAACGA TGAGGCCAAGAGGAGGATCTACGACGAGTACGGCTCCATGGGCCTTTACGTGTCTGAGCA GTTTGGAGAGGAGAGCGTCAAATATTGCTTCCTCATGTCCAAGTGGTGGTTTAAGGGCCT GGTTCTCTGCTGCACGTTGTTCACGTGCTGCTGCTGTTGCTGCTGCTGCTGCTTCTGCTG CGGGAAGTGCAAACCGCCCGACGACGACG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2116#0      ACGCTGA-GAAGCGGTCTGGTCAGCCGGTGCCGCTC-GGCTAACATGGGCCTTAAAATTG 58
consensus_2116#1      -TGTTCCTGACACAGAAGGAGCGGCAATAACGTCTGAGGACATTGTGGCCATCATCATT- 58
                        * *   **  * *   *  * **     *  **  **  *   *** * * *  *** 

consensus_2116#0      GGAATTAAGACCT-CAAACCAGATTTCTCTATGATCCAGACAATCATACGGCGAGATCTA 117
consensus_2116#1      -GACTCCAGTCCTGCCAACCAGATGGGTCCATCTTGTAAATTAAAAAA----GAGTTCCA 113
                       ** *  ** *** * ********   ** **  *  * *  *  * *    *** ** *

consensus_2116#0      CACTGTTCTTTTCCAACAAGAGGTGAGCCATGGCTGAACCCAACGCGGCACGTCCCCAGA 177
consensus_2116#1      CGGGAGTTTAATCCACAAACAGGTGAGCCATGGCTGAACCCAACGCGGCACGTCCCCAGA 173
                      *     * *  ****  ** ****************************************

consensus_2116#0      GGAAGATGTCCACGGCTGGGGAGAGCGTGTACAAGGTGCTAGGCCTGGAAAAAGGTGCGT 237
consensus_2116#1      GGAAGATGTCCACGGCTGGGGAGAGCGTGTACAAGGTGCTAGGCCTGGAAAAAGGTGCGT 233
                      ************************************************************

consensus_2116#0      CGGCTGGAGGACATCAAGAAAGCTTACAGGAAGTTGGCGCTGAAATATCACCCGGATAAG 297
consensus_2116#1      CGGC-GGAGGACATCAAGAAAGCTTACAGGAAGTTGGCGCTGAAATATCACCCGGATAAG 292
                      **** *******************************************************

consensus_2116#0      AACCCAGACAACCCAGAGGCGGCGGAGAAGTTTAAGGAGATTAACAACGCCAACTCCATC 357
consensus_2116#1      AACCCAGACAACCCAGAGGCGGCGGAGAAGTTTAAGGAGATTAACAACGCCAACTCCATC 352
                      ************************************************************

consensus_2116#0      CTGAACGATGAGGCCAAGAGGAGGATCTACGACGAGTACGGCTCCATGGGCCTTTACGTG 417
consensus_2116#1      CTGAACGATGAGGCCAAGAGGAGGATCTACGACGAGTACGGCTCCATGGGCCTTTACGTG 412
                      ************************************************************

consensus_2116#0      TCTGAGCAGTTTGGAGAGGAGAGCGTCAAATATTACTTCCTCATGTCCAAGTGGTGGTTT 477
consensus_2116#1      TCTGAGCAGTTTGGAGAGGAGAGCGTCAAATATTGCTTCCTCATGTCCAAGTGGTGGTTT 472
                      ********************************** *************************

consensus_2116#0      AAGGGCCTGGTTCTCTGCTGCACGTTGTTCACGTGCTGCTGCTGTTGCTGCTGCTGCTGC 537
consensus_2116#1      AAGGGCCTGGTTCTCTGCTGCACGTTGTTCACGTGCTGCTGCTGTTGCTGCTGCTGCTGC 532
                      ************************************************************

consensus_2116#0      TTCTGCTGCGGGAAGTGCAAACCGCCCGACGACGACGAGAACTACCAGTACGTGGACCCC 597
consensus_2116#1      TTCTGCTGCGGGAAGTGCAAACCGCCCGACGACGACG----------------------- 569
                      *************************************                       

consensus_2116#0      GAGGACCTGGAGGCCCAGATCAGAGCAGAGCAGGACGATGGTTGCACAGTTATCATAGAC 657
consensus_2116#1      ------------------------------------------------------------
                                                                                  

consensus_2116#0      CAGCCTACATCTAACGTGGGCCTGAACAGCCCAGAAGGTCAGAGTCAGCCGATCCCGCTG 717
consensus_2116#1      ------------------------------------------------------------
                                                                                  

consensus_2116#0      GCCATGGCGGCGAGCAGCCCTGCAGGCGAGGAGCACTCTGGAGACGCCCTCCCAGAGTCC 777
consensus_2116#1      ------------------------------------------------------------
                                                                                  

consensus_2116#0      CAGTGACTCGAAAGTGACCACCTCCATGTTCCTGGAGCAGCAGAAGCAGCTCGTTATGAT 837
consensus_2116#1      ------------------------------------------------------------
                                                                                  

consensus_2116#0      CCAGCCACCCAGCCTGCTGCCAGAGCCACGGAGATCCAGAAGCCCCCAGTCGGGGCCCAC 897
consensus_2116#1      ------------------------------------------------------------
                                                                                  

consensus_2116#0      CCCTCAATCCTGACCCAACAGAACCCACCCGCTCCAGCCACTGGACAGCGCCT 950
consensus_2116#1      -----------------------------------------------------
                                                                           




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)