These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2116#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 950 fasta sequence [ACGCTGAGAAGCGGTCTGGTCAGCCGGTGCCGCTCGGCTAACATGGGCCTTAAAATTGGGAATTAAGACCTCAAACCAGATTTCTCTATGATCCAGACAATCATACGGCGAGATCTACACTGTTCTTTTCCAACAAGAGGTGAGCCATGGCTGAACCCAACGCGGCACGTCCCCAGAGGAAGATGTCCACGGCTGGGGAGAGCGTGTACAAGGTGCTAGGCCTGGAAAAAGGTGCGTCGGCTGGAGGACATCAAGAAAGCTTACAGGAAGTTGGCGCTGAAATATCACCCGGATAAGAACCCAGACAACCCAGAGGCGGCGGAGAAGTTTAAGGAGATTAACAACGCCAACTCCATCCTGAACGATGAGGCCAAGAGGAGGATCTACGACGAGTACGGCTCCATGGGCCTTTACGTGTCTGAGCAGTTTGGAGAGGAGAGCGTCAAATATTACTTCCTCATGTCCAAGTGGTGGTTTAAGGGCCTGGTTCTCTGCTGCACGTTGTTCACGTGCTGCTGCTGTTGCTGCTGCTGCTGCTTCTGCTGCGGGAAGTGCAAACCGCCCGACGACGACGAGAACTACCAGTACGTGGACCCCGAGGACCTGGAGGCCCAGATCAGAGCAGAGCAGGACGATGGTTGCACAGTTATCATAGACCAGCCTACATCTAACGTGGGCCTGAACAGCCCAGAAGGTCAGAGTCAGCCGATCCCGCTGGCCATGGCGGCGAGCAGCCCTGCAGGCGAGGAGCACTCTGGAGACGCCCTCCCAGAGTCCCAGTGACTCGAAAGTGACCACCTCCATGTTCCTGGAGCAGCAGAAGCAGCTCGTTATGATCCAGCCACCCAGCCTGCTGCCAGAGCCACGGAGATCCAGAAGCCCCCAGTCGGGGCCCACCCCTCAATCCTGACCCAACAGAACCCACCCGCTCCAGCCACTGGACAGCGCCT] [+] EMBL BU805496 [ACGCTGAGAAGCGGTCTGGTCAGCCGGTGCCGCTCGGCTAATATGGGCCTTAAAATTGGGAATTAAGACCTCAAACCAGATTTCTCTATGATCCAGACAATCATACGGCGAGATCTACACTGTTCTTTTCCAACAAGAGGTGAGCCATGGCTGAACCCAACGCGGCACGTCCCCAGAGGAAGATGTCCACGGCTGGGGAGAGCGTGTACAAGGTGCTAGGCCTGGAAAAAGGTGCGTCGGC GGAGGACATCAAGAAAGCTTACAGGAAGTTGGCGCTGAAATATCACCCGGATAAGAACCCAGACAACCCAGAGGCGGCGGAGAAGTTTAAGGAGATTAACAACGCCAACTCCATCCTGAACGATGAGGCCAAGAGGGGGATCTACGACGAGTACGGCTCCATGGGCCTTTACGTGTCTGAGCAGTTTGGAGAGGAGAGCGTCAAATATTACTTCCTCATGTCCAAGTGGTGGTTTAAGGGCCTGGTTCTCTGCTGCACGTTGTTCACGTGCTGCTGCTGTTGCTGCTGCTGCTGCTTCTGCTGCGGGAAGTGCAAACCGCCCGACGACGACGAGAACTACCAGTACGTGGA ] [+] EMBL CA589127 [ TACCATGGGCCTTAAAATTGGGAATTAAGACTTCAAACCAGATTTCTCTATGATCCAGACAATCATACGGCGAGATCTACACTGTTCTTTTCCAACAAGAGGTGAGCCATGGCTGAACCCAACGCGGCACGTCCCCAGAGGAAGATGTCCACGGCTGGGGAGAGCGTGTACAAGGTGCTAGGCCTGGAAAAAGGTGCGTCGGCTTTTTGTCATCAAGAAAGCTTACAGGAAGTTGGCGCTGAAATATCACCCGGATAAGAACCCAGACAACCCAGAGGCGGCGGAGAAGTTTAAGGAGATTAACAACGCCAACTCCATCCTGAACGATGAGGCCAAGAGGAGGATCTACGACGAGTACGGCTCCATGGGCCTTTACGTGTCTGAGCAGTTTGGAGAGGAGAGCGTCAAATATTACTTCCTCATGTCCAAGTGGTGGTTTAAGGGCCTGGTTCTCTGCTGCACGTTGTTCACGTGCTGCTGCTGTTGCTGCTGCTGCTGCTTCTGCTACGGGAAGTGC ] [+] EMBL BU807550 [ AGAGGAGGATCTACGACGAGTACGGCTCCATGGGCCTTTACGTGTCTGAGCAGTTTGGAGAGGAGAGCGTCAAATATTACTTCCTCATGTCCAAGTGGTGGTTTAAGGGCCTGGTTCTCTGCTGCACGTTGTTCACGTGCTGCTGCTGTTGCTGCTGCTGCTGCTTCTGCTGCGGGAAGTGCAAACCGCCCGACGACGACGAGAACTACCAGTACGTGGACCCCGAGGACCTGGAGGCCCAGATCAGAGCAGAGCAGGACGATGGTTGCACAGTTATCATAGACCAGCCTACATCTAACGTGGGCCTGAACAGCCCAGAAGGTCAGAGTCAGCCGATCCCGCTGGCCATGGCGGCGAGCAGCCCTGCAGGCGAGGAGCACTCTGGAGACGCCCTCCCAGAGTCCCAGTGACTCGAAAGTGACCACCTCCATGTTCCTGGAGCAGCAGAAGCAGCTCGTTATGATCCAGCCACCCAGCCTGCTGCCAGAGCCACGGAGATCCAGAAGCCCCCAGTCGGGGCCCACCCCTCAATCCTGACCCAACAGAACCCACCCGCTCCAGCCACTGGACAGCGCCT] consensusID : consensus_2116#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 569 fasta sequence [TGTTCCTGACACAGAAGGAGCGGCAATAACGTCTGAGGACATTGTGGCCATCATCATTGACTCCAGTCCTGCCAACCAGATGGGTCCATCTTGTAAATTAAAAAAGAGTTCCACGGGAGTTTAATCCACAAACAGGTGAGCCATGGCTGAACCCAACGCGGCACGTCCCCAGAGGAAGATGTCCACGGCTGGGGAGAGCGTGTACAAGGTGCTAGGCCTGGAAAAAGGTGCGTCGGCGGAGGACATCAAGAAAGCTTACAGGAAGTTGGCGCTGAAATATCACCCGGATAAGAACCCAGACAACCCAGAGGCGGCGGAGAAGTTTAAGGAGATTAACAACGCCAACTCCATCCTGAACGATGAGGCCAAGAGGAGGATCTACGACGAGTACGGCTCCATGGGCCTTTACGTGTCTGAGCAGTTTGGAGAGGAGAGCGTCAAATATTGCTTCCTCATGTCCAAGTGGTGGTTTAAGGGCCTGGTTCTCTGCTGCACGTTGTTCACGTGCTGCTGCTGTTGCTGCTGCTGCTGCTTCTGCTGCGGGAAGTGCAAACCGCCCGACGACGACG] [+] EMBL CA332746 [TGTTCCTGACACAGAAGGAGCGGCAATAACGTCTGAGGACATTGTGGCCATCATCATTGACTCCAGTCCTGCCAACCAGATGGGTCCATCTTGTAAATTAAAAAAGAGTTCCACGGGAGTTTAATCCACAAACAGGTGAGCCATGGCTGAACCCAACGCGGCACGTCCCCAGAGGAAGATGTCCACGGCTGGGGAGAGCGTGTACAAGGTGCTAGGCCTGGAAAAAGGTGCGTCGGCGGAGGACATCAAGAAAGCTTACAGGAAGTTGGCGCTGAAATATCACCCGGATAAGAACCCAGACAACCCAGAGGCGGCGGAGAAGTTTAAGGAGATTAACAACGCCAACTCCATCCTGAACGATGAGGCCAAGAGGAGGATCTACGACGAGTACGGCTCCATGGGCCTTTACGTGTCTGAGCAGTTTGGAGAGGAGAGCGTCAAATATTGCTTCCTCATGTCCAAGTGGTGGTTTAAGGGCCTGGTTCTCTGCTGCACGTTGTTCACGTGCTGCTGCTGTTGCTGCTGCTGCTGCTTCTGCTGCGGGAAGTGCAAACCGCCCGACGACGACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2116#0 ACGCTGA-GAAGCGGTCTGGTCAGCCGGTGCCGCTC-GGCTAACATGGGCCTTAAAATTG 58 consensus_2116#1 -TGTTCCTGACACAGAAGGAGCGGCAATAACGTCTGAGGACATTGTGGCCATCATCATT- 58 * * ** * * * * ** * ** ** * *** * * * *** consensus_2116#0 GGAATTAAGACCT-CAAACCAGATTTCTCTATGATCCAGACAATCATACGGCGAGATCTA 117 consensus_2116#1 -GACTCCAGTCCTGCCAACCAGATGGGTCCATCTTGTAAATTAAAAAA----GAGTTCCA 113 ** * ** *** * ******** ** ** * * * * * * *** ** * consensus_2116#0 CACTGTTCTTTTCCAACAAGAGGTGAGCCATGGCTGAACCCAACGCGGCACGTCCCCAGA 177 consensus_2116#1 CGGGAGTTTAATCCACAAACAGGTGAGCCATGGCTGAACCCAACGCGGCACGTCCCCAGA 173 * * * **** ** **************************************** consensus_2116#0 GGAAGATGTCCACGGCTGGGGAGAGCGTGTACAAGGTGCTAGGCCTGGAAAAAGGTGCGT 237 consensus_2116#1 GGAAGATGTCCACGGCTGGGGAGAGCGTGTACAAGGTGCTAGGCCTGGAAAAAGGTGCGT 233 ************************************************************ consensus_2116#0 CGGCTGGAGGACATCAAGAAAGCTTACAGGAAGTTGGCGCTGAAATATCACCCGGATAAG 297 consensus_2116#1 CGGC-GGAGGACATCAAGAAAGCTTACAGGAAGTTGGCGCTGAAATATCACCCGGATAAG 292 **** ******************************************************* consensus_2116#0 AACCCAGACAACCCAGAGGCGGCGGAGAAGTTTAAGGAGATTAACAACGCCAACTCCATC 357 consensus_2116#1 AACCCAGACAACCCAGAGGCGGCGGAGAAGTTTAAGGAGATTAACAACGCCAACTCCATC 352 ************************************************************ consensus_2116#0 CTGAACGATGAGGCCAAGAGGAGGATCTACGACGAGTACGGCTCCATGGGCCTTTACGTG 417 consensus_2116#1 CTGAACGATGAGGCCAAGAGGAGGATCTACGACGAGTACGGCTCCATGGGCCTTTACGTG 412 ************************************************************ consensus_2116#0 TCTGAGCAGTTTGGAGAGGAGAGCGTCAAATATTACTTCCTCATGTCCAAGTGGTGGTTT 477 consensus_2116#1 TCTGAGCAGTTTGGAGAGGAGAGCGTCAAATATTGCTTCCTCATGTCCAAGTGGTGGTTT 472 ********************************** ************************* consensus_2116#0 AAGGGCCTGGTTCTCTGCTGCACGTTGTTCACGTGCTGCTGCTGTTGCTGCTGCTGCTGC 537 consensus_2116#1 AAGGGCCTGGTTCTCTGCTGCACGTTGTTCACGTGCTGCTGCTGTTGCTGCTGCTGCTGC 532 ************************************************************ consensus_2116#0 TTCTGCTGCGGGAAGTGCAAACCGCCCGACGACGACGAGAACTACCAGTACGTGGACCCC 597 consensus_2116#1 TTCTGCTGCGGGAAGTGCAAACCGCCCGACGACGACG----------------------- 569 ************************************* consensus_2116#0 GAGGACCTGGAGGCCCAGATCAGAGCAGAGCAGGACGATGGTTGCACAGTTATCATAGAC 657 consensus_2116#1 ------------------------------------------------------------ consensus_2116#0 CAGCCTACATCTAACGTGGGCCTGAACAGCCCAGAAGGTCAGAGTCAGCCGATCCCGCTG 717 consensus_2116#1 ------------------------------------------------------------ consensus_2116#0 GCCATGGCGGCGAGCAGCCCTGCAGGCGAGGAGCACTCTGGAGACGCCCTCCCAGAGTCC 777 consensus_2116#1 ------------------------------------------------------------ consensus_2116#0 CAGTGACTCGAAAGTGACCACCTCCATGTTCCTGGAGCAGCAGAAGCAGCTCGTTATGAT 837 consensus_2116#1 ------------------------------------------------------------ consensus_2116#0 CCAGCCACCCAGCCTGCTGCCAGAGCCACGGAGATCCAGAAGCCCCCAGTCGGGGCCCAC 897 consensus_2116#1 ------------------------------------------------------------ consensus_2116#0 CCCTCAATCCTGACCCAACAGAACCCACCCGCTCCAGCCACTGGACAGCGCCT 950 consensus_2116#1 ----------------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |