These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2118#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1060 fasta sequence [TCTGGAGCAAGGATTGAGTTGCAGAGGAATCCACCACCTAACTCTGATCCCAGTATCAAGATGTTCACAGTTCGTGGCTCTCCTCAGCAGATTGACTATGCCAGACAGCTAGTAGAGGAGAAGATCGGGGGACCAGTTACTCCAATGGGTGGTCCACATGGCCCCCCTGGACCGCATGGAGGTCCAGGCCCACATGGACCTCCTGGTCCACCAGGGGCACCAATGGGCCCCTACAACCCAGGGCCATACAACCAGGGACCTCCAGGGCCTCATGGGCCGCCTGCTCCTTACCAGCCTCAGGGATGGGGCAATGGTTACCCACACTGGCAACAGGGACAGCCTGATCCAAATAAAGCAGCAGCTGATGCCAATGCAGCAGCATGGGCAGCCTACTATGCCCAGTATGGTCAACAACCACAGGCTCCAATGACCCCAACAAGTGGAGCTCCTGGCACAACTCAAAGCAATGGCCAAGGTCAACAGAGTCAGCAACCTCAGGACTACACCAAAGCCTGGGAGGAGTATTACAAGAAACAAGGTCAAGCGGCATCTCAGGCTCCAGCAGCTGCAGCACCTCCAGCCTCTCAGCCTGGAGGACAGCCAGACTACAGCGCTGCCTGGGCAGAGTACTACCGCCAGCAAGCAGCATACTATGGCACACCCAACCCTCAATCCATGGGTGCAGCACCACAAGCCCCCCAGGGCCAGTAATGTGAAGTGGACATAAAGTAAATGCTACATTGTCGAAAACAAAATCCTATGTTAAATGTTTGGATGCAGACGCCTTGATGAAGATCTTAAATTTCCTTGGTTTCAAAGTGTTTCACATAGATGACAGATAACCCAGCGAACACGTCCTCTTTAATTTTTTCTTTTTTTTTTCTTTCTGTAAATGCTCTTTGTTTTTAATAAGGTAATTATACATATGGTCATTCCAGCCCTGTATCTACATTAAATGTGGTTAGAATTCATGTTTATTAAACTGTAAGACATTGCCATGTAAATCATCTCATTTTTAAAATGCCTATTGCTTGTTGTGTTTTTGCAATAAACAAACTTA] [+] EMBL CA847152 [TCTGGAGCAAGGATTGAGTTGCAGAGGAATCCACCACCTAACTCTGATCCCAGTATCAAGATGTTCACAGTTCGTGGCTCTCCTCAGCAGATTGACTATGCCAGACAGCTAGTAGAGGAGAAGATCGGGGGACCAGTTACTCCAATGGGTGGTCCACATGGCCCCCCTGGACCGCATGGAGGTCCAGGCCCACATGGACCTCCTGGTCCACCAGGGGCACCAATGGGCCCCTACAACCCAGGGCCATACAACCAGGGACCTCCAGGGCCTCATGGGCCGCCTGCTCCTTACCAGCCTCAGGGATGGGGCAATGGTTACCCACACTGGCAACAGGGACAGCCTGATCCAAATAAAGCAGCAGCTGATGCCAATGCAGCAGCATGGGCAGCCTACTATGCCCAGTATGGTCAACAACCACAGGCTCCAATGACCCCAACAAGTGGAGCTCCTGGCACAACTCAAAGCAATGGCCAAGGTCAACAGAGTCAGCAACCTCAGGACTACACCAAAGCCTGGGAGGAGTATTACAAGAAACAAGGTCAAGCGGCATCTCAGGCTCCAGCAGCTGCAGCACCTCCAGCCTCTCAGGCTGGAGGACAGGCAGACTACAGCGCTGCCTGGGCAGAGTACTACCGCCAGCAAGCAGCATACGCTAGCCGCGCCAACCCTCAATCGATGNGTGCAGCACCACAA ] [+] EMBL CA589331 [ TGCCAATGCAGCAGCATGGGCAGCCTACTATGCCCAGTATGGTCAACAACCACAGGCTCCAATGACCCCAACAAGTGGAGCTCCTGGCACAACTCAAAGCAATGGCCAAGGTCAACAGAGTCAGCAACCTCAGGACTACACCAAAGCCTGGGAGGAGTATTACAAGAAACAAGGTCAAGCGGCATCTCAGGCTCCAGCAGCTGCAGCACCTCCAGCCTCTCAGCCTGGAGGACAGCCAGACTACAGCGCTGCCTGGGCAGAGTACTACCGCCAGCAAGCAGCATACTATGGCACACCCAACCCTCAATCCATGGGTGCAGCACCACAAGCCCCCCAGGGCCAGTAATGTGAAGTGGACATAAAGTAAATGCTACATTGTCGAAAACAAAATCCTATGTTAAATGTTTGGATGCAGACGCCTTGATGAAGATCTTAAATTTCCTTGGTTTCAAAGTGTTTCACATAGATGACAGATAACCCAGCGAACACGTCCTCTTTAATTTTTTCTTTTTTTTTTCTTTCTGTAAATGCTCTTTGTTTTTAATAAGGTAATTATACATATGGTCATTCCAGCCCTGTATCTACATTAAATGT ] [-] EMBL CA329461 [ ACAACTCAAAGCAATGGCCAAGGTCAACAGAGTCAGCAACCTCAGGACTACACCAAAGCCTGGGAGGAGTATTACAAGAAACAAGGTCAAGCGGCATCTCAGGCTCCAGCAGCTGCAGCACCTCCAGCCTCTCAGCCTGGAGGACAGCCAGACTACAGCGCTGCCTGGGCAGAGTACTACCGCCAGCAAGCAGCATACTATGGCACACCCAACCCTCAATCCATGGGTGCAGCACCACAAGCCCCCCAGGGCCAGTAATGTGAAGTGGACATAAAGTAAATGCTACATTGTCGAAAACAAAATCCTATGTTAAATGTTTGGATGCAGACGCCTTGATGAAGATCTTAAATTTCCTTGGTTTCAAAGTGTTTCACATAGATGACAGATAACCCAGCGAACACGTCCTCTTTAATTTTTTCTTTTTTTTTTCTTTCTGTAAATGCTCTTTGTTTTTAATAAGGTAATTATACATATGGTCATTCCAGCCCTGTATCTACATTAAATGTGGTTAGAATTCATGTTTATTAAACTGTAAGACATTGCCATGTAAATCATCTCATTTTTAAAATGCCTATTGCTTGTTGTGTTTTTGCAATAAACAAACTTA] consensusID : consensus_2118#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 579 fasta sequence [AGTTTTACCTGACTGTCCTGGGAAAAGAACAAATGTATATATAGACACACAGCACTAAAAATATGTAACAATGCAACCACTTTTTCAGGGCAACATGAGGAAAAATACTTGCTTACCGCATTTCTAAATTTGCCTGTGGAGGAGGAAGCGTCTATAAAAAGGCAAAACAAAACAGTGTATACACTACCTCAACGTGAGCAAACCAGGCAAAATGGTTTAAAAAAACACCACAGCAATGGAGATAAAGAGTTAGAAACCTGTCAACTGCATAAACAGCTACCTACTGCTAAAATCAGTAATGTCACGGAAACAATCAACAATCAAGGTTCTAGCAACAAGGACATTTGGTGGTCCTGATTACTGGGAATTAATGAGCGCATGTACTCTACGAGCCTTTAGACAGTTGGAGAGACAGGAAAGCATAACCGAGTCATCCTTTTGAAACCATTAACCCAAGACATTTTAGCAGCATACCCCAGAGAACAAAAAATGCAGAAAGCCCACATTTGAATTTAGAACCACCCCAACTTACCACACAGGAGTTTTAAGTTTGTTTATTGCAAAAACACAACAAGCAAT] [+] EMBL CA332560 [AGTTTTACCTGACTGTCCTGGGAAAAGAACAAATGTATATATAGACACACAGCACTAAAAATATGTAACAATGCAACCACTTTTTCAGGGCAACATGAGGAAAAATACTTGCTTACCGCATTTCTAAATTTGCCTGTGGAGGAGGAAGCGTCTATAAAAAGGCAAAACAAAACAGTGTATACACTACCTCAACGTGAGCAAACCAGGCAAAATGGTTTAAAAAAACACCACAGCAATGGAGATAAAGAGTTAGAAACCTGTCAACTGCATAAACAGCTACCTACTGCTAAAATCAGTAATGTCACGGAAACAATCAACAATCAAGGTTCTAGCAACAAGGACATTTGGTGGTCCTGATTACTGGGAATTAATGAGCGCATGTACTCTACGAGCCTTTAGACAGTTGGAGAGACAGGAAAGCATAACCGAGTCATCCTTTTGAAACCATTAACCCAAGACATTTTAGCAGCATACCCCAGAGAACAAAAAATGCAGAAAGCCCACATTTGAATTTAGAACCACCCCAACTTACCACACAGGAGTTTTAAGTTTGTTTATTGCAAAAACACAACAAGCAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2118#0 TCTGGAGCAAGGATTGAGTTGCAGAGGAATCCACCACCTAACTCTGATCCCAGTATCAAG 60 consensus_2118#1 ------------------------------------------------------------ consensus_2118#0 ATGTTCACAGTTCGTGGCTCTCCTCAGCAGATTGACTATGCCAGACAGCTAGTAGAGGAG 120 consensus_2118#1 ------------------------------------------------------------ consensus_2118#0 AAGATCGGGGGACCAGTTACTCCAATGGGTGGTCCACATGGCCCCCCTGGACCGCATGGA 180 consensus_2118#1 ------------------------------------------------------------ consensus_2118#0 GGTCCAGGCCCACATGGACCTCCTGGTCCACCAGGGGCACCAATGGGCCCCTACAACCCA 240 consensus_2118#1 ------------------------------------------------------------ consensus_2118#0 GGGCCATACAACCAGGGACCTCCAGGGCCTCATGGGCCGCCTGCTCCTTACCAGCCTCAG 300 consensus_2118#1 --------------------------------------AGTTTTACCTGACTGTCCTGGG 22 * *** ** *** * consensus_2118#0 GGATGGGGCAATGGTTACCCACACTGGCAACAGGGACAGCCTGATCCAAATAAAGCAGCA 360 consensus_2118#1 AAAAGAACAAATGTATATATAGACACACAGCACTAAAAATATG----TAACAATGCAACC 78 * * **** ** * ** ** ** * * ** ** ** *** * consensus_2118#0 GCTGATGCCAATGCAGCAGCATGGGCAGCCTACTATGCCCAGTATGGTCAACAACCACAG 420 consensus_2118#1 ACTTTT-TCAGGGCAACATGAGGAAAAA--TACT-TGCTTA-------CCGCATTTCTAA 127 ** * ** *** ** * * * **** *** * * ** * consensus_2118#0 GCTCCAATGACCCCAACAAGTGGAGCTCCTGGCACAACTCAAAGCAATGGCCAAGGTCAA 480 consensus_2118#1 ATT----TGCCTGTGGAGGAGGAAGCGTCTATAAAAAGGCAAAACAAAA--CAGTGTATA 181 * ** * * *** ** * ** **** *** ** ** * consensus_2118#0 CAGAGTCAGCAACCTCAG--GACTACACCAAA-GCCTGGGAGGAGTATTACAAGAAACAA 537 consensus_2118#1 CACTACCT-CAACGTGAGCAAACCAGGCAAAATGGTTTAAAAAAACACCACAGCAATGGA 240 ** * **** * ** ** * * *** * * * * * *** ** * consensus_2118#0 GGTCAAGCGGCATCTCAGGCTCCAGCAGCTGCAGCACCTCCAGCCTCTCAGCCTGGAGGA 597 consensus_2118#1 GATAAAGAG----TTAGAAACCTGTCAACTGCATAAAC---AGCTACCTACTGCTAAAAT 293 * * *** * * * ** ***** * * *** * * * consensus_2118#0 CAGCCAGACTACAGCGCTGCCTGGGCAGAGTACTACCGCCAGCAAGCAGCATACTATGGC 657 consensus_2118#1 CAGTAATGTCACGGAAACAATCAACAATCAAGGTTCTAGCAACAAGGA-CATTTGGTGGT 352 *** * ** * * * * ** **** * *** *** consensus_2118#0 ACACCCAACCCTCAATCCATGGGTGCA-GCACCACAAGCCCCCCAGGGCCAGTAATGTGA 716 consensus_2118#1 CCTGATTACTGGGAATTAATGAGCGCATGTACTCTACGAGCCTTTAGACAGTTGGAGAGA 412 * ** *** *** * *** * ** * * ** * * * * ** consensus_2118#0 AGTGGACATAAAGTAAATGCTACATTGTCGAAAACAAAATCCTATGTTAAATGTTTGGAT 776 consensus_2118#1 CAGGAAAGCATAACCGA-GTCATCCTTTTGAAACCATTAACCCAAGACAT---TTTAGCA 468 * * * * * * * * * **** ** * ** * * * *** * consensus_2118#0 GCAGACGCCTTGATGAAGATCTTAAATTTCCTTGGTTTCAAAGTGTTTCACATAGATGAC 836 consensus_2118#1 GCATACCCC-----AGAGAACAAAAAATGCAGAAAGCCCACAT--TTGAATTTAGAACCA 521 *** ** ** *** * *** * * ** * ** * **** consensus_2118#0 AGATAACCCAGCGAACACGTCCTCTTTAATTTTTTCTTTTTTTTTTCTTTCTGTAAATGC 896 consensus_2118#1 CCCCAACTTACC--ACACAGGAGTTTTAAGTTTGT-TTATTGCAAAAACACAACAAGCAA 578 *** * * **** ***** *** * ** ** * ** consensus_2118#0 TCTTTGTTTTTAATAAGGTAATTATACATATGGTCATTCCAGCCCTGTATCTACATTAAA 956 consensus_2118#1 T----------------------------------------------------------- 579 * consensus_2118#0 TGTGGTTAGAATTCATGTTTATTAAACTGTAAGACATTGCCATGTAAATCATCTCATTTT 1016 consensus_2118#1 ------------------------------------------------------------ consensus_2118#0 TAAAATGCCTATTGCTTGTTGTGTTTTTGCAATAAACAAACTTA 1060 consensus_2118#1 -------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |