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Takifugu rubripes
cluster # 2118 cluster # 2118       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2118#0 length = 1060 sequences # 3  
consensus_2118#1 length = 579 sequences # 1  

consensusID : consensus_2118#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1060
fasta sequence
                              [TCTGGAGCAAGGATTGAGTTGCAGAGGAATCCACCACCTAACTCTGATCCCAGTATCAAGATGTTCACAGTTCGTGGCTCTCCTCAGCAGATTGACTATGCCAGACAGCTAGTAGAGGAGAAGATCGGGGGACCAGTTACTCCAATGGGTGGTCCACATGGCCCCCCTGGACCGCATGGAGGTCCAGGCCCACATGGACCTCCTGGTCCACCAGGGGCACCAATGGGCCCCTACAACCCAGGGCCATACAACCAGGGACCTCCAGGGCCTCATGGGCCGCCTGCTCCTTACCAGCCTCAGGGATGGGGCAATGGTTACCCACACTGGCAACAGGGACAGCCTGATCCAAATAAAGCAGCAGCTGATGCCAATGCAGCAGCATGGGCAGCCTACTATGCCCAGTATGGTCAACAACCACAGGCTCCAATGACCCCAACAAGTGGAGCTCCTGGCACAACTCAAAGCAATGGCCAAGGTCAACAGAGTCAGCAACCTCAGGACTACACCAAAGCCTGGGAGGAGTATTACAAGAAACAAGGTCAAGCGGCATCTCAGGCTCCAGCAGCTGCAGCACCTCCAGCCTCTCAGCCTGGAGGACAGCCAGACTACAGCGCTGCCTGGGCAGAGTACTACCGCCAGCAAGCAGCATACTATGGCACACCCAACCCTCAATCCATGGGTGCAGCACCACAAGCCCCCCAGGGCCAGTAATGTGAAGTGGACATAAAGTAAATGCTACATTGTCGAAAACAAAATCCTATGTTAAATGTTTGGATGCAGACGCCTTGATGAAGATCTTAAATTTCCTTGGTTTCAAAGTGTTTCACATAGATGACAGATAACCCAGCGAACACGTCCTCTTTAATTTTTTCTTTTTTTTTTCTTTCTGTAAATGCTCTTTGTTTTTAATAAGGTAATTATACATATGGTCATTCCAGCCCTGTATCTACATTAAATGTGGTTAGAATTCATGTTTATTAAACTGTAAGACATTGCCATGTAAATCATCTCATTTTTAAAATGCCTATTGCTTGTTGTGTTTTTGCAATAAACAAACTTA]

[+] EMBL CA847152             [TCTGGAGCAAGGATTGAGTTGCAGAGGAATCCACCACCTAACTCTGATCCCAGTATCAAGATGTTCACAGTTCGTGGCTCTCCTCAGCAGATTGACTATGCCAGACAGCTAGTAGAGGAGAAGATCGGGGGACCAGTTACTCCAATGGGTGGTCCACATGGCCCCCCTGGACCGCATGGAGGTCCAGGCCCACATGGACCTCCTGGTCCACCAGGGGCACCAATGGGCCCCTACAACCCAGGGCCATACAACCAGGGACCTCCAGGGCCTCATGGGCCGCCTGCTCCTTACCAGCCTCAGGGATGGGGCAATGGTTACCCACACTGGCAACAGGGACAGCCTGATCCAAATAAAGCAGCAGCTGATGCCAATGCAGCAGCATGGGCAGCCTACTATGCCCAGTATGGTCAACAACCACAGGCTCCAATGACCCCAACAAGTGGAGCTCCTGGCACAACTCAAAGCAATGGCCAAGGTCAACAGAGTCAGCAACCTCAGGACTACACCAAAGCCTGGGAGGAGTATTACAAGAAACAAGGTCAAGCGGCATCTCAGGCTCCAGCAGCTGCAGCACCTCCAGCCTCTCAGGCTGGAGGACAGGCAGACTACAGCGCTGCCTGGGCAGAGTACTACCGCCAGCAAGCAGCATACGCTAGCCGCGCCAACCCTCAATCGATGNGTGCAGCACCACAA                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CA589331             [                                                                                                                                                                                                                                                                                                                                                                             TGCCAATGCAGCAGCATGGGCAGCCTACTATGCCCAGTATGGTCAACAACCACAGGCTCCAATGACCCCAACAAGTGGAGCTCCTGGCACAACTCAAAGCAATGGCCAAGGTCAACAGAGTCAGCAACCTCAGGACTACACCAAAGCCTGGGAGGAGTATTACAAGAAACAAGGTCAAGCGGCATCTCAGGCTCCAGCAGCTGCAGCACCTCCAGCCTCTCAGCCTGGAGGACAGCCAGACTACAGCGCTGCCTGGGCAGAGTACTACCGCCAGCAAGCAGCATACTATGGCACACCCAACCCTCAATCCATGGGTGCAGCACCACAAGCCCCCCAGGGCCAGTAATGTGAAGTGGACATAAAGTAAATGCTACATTGTCGAAAACAAAATCCTATGTTAAATGTTTGGATGCAGACGCCTTGATGAAGATCTTAAATTTCCTTGGTTTCAAAGTGTTTCACATAGATGACAGATAACCCAGCGAACACGTCCTCTTTAATTTTTTCTTTTTTTTTTCTTTCTGTAAATGCTCTTTGTTTTTAATAAGGTAATTATACATATGGTCATTCCAGCCCTGTATCTACATTAAATGT                                                                                                     ]
[-] EMBL CA329461             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ACAACTCAAAGCAATGGCCAAGGTCAACAGAGTCAGCAACCTCAGGACTACACCAAAGCCTGGGAGGAGTATTACAAGAAACAAGGTCAAGCGGCATCTCAGGCTCCAGCAGCTGCAGCACCTCCAGCCTCTCAGCCTGGAGGACAGCCAGACTACAGCGCTGCCTGGGCAGAGTACTACCGCCAGCAAGCAGCATACTATGGCACACCCAACCCTCAATCCATGGGTGCAGCACCACAAGCCCCCCAGGGCCAGTAATGTGAAGTGGACATAAAGTAAATGCTACATTGTCGAAAACAAAATCCTATGTTAAATGTTTGGATGCAGACGCCTTGATGAAGATCTTAAATTTCCTTGGTTTCAAAGTGTTTCACATAGATGACAGATAACCCAGCGAACACGTCCTCTTTAATTTTTTCTTTTTTTTTTCTTTCTGTAAATGCTCTTTGTTTTTAATAAGGTAATTATACATATGGTCATTCCAGCCCTGTATCTACATTAAATGTGGTTAGAATTCATGTTTATTAAACTGTAAGACATTGCCATGTAAATCATCTCATTTTTAAAATGCCTATTGCTTGTTGTGTTTTTGCAATAAACAAACTTA]


>consensus_2118#0 TCTGGAGCAAGGATTGAGTTGCAGAGGAATCCACCACCTAACTCTGATCCCAGTATCAAG ATGTTCACAGTTCGTGGCTCTCCTCAGCAGATTGACTATGCCAGACAGCTAGTAGAGGAG AAGATCGGGGGACCAGTTACTCCAATGGGTGGTCCACATGGCCCCCCTGGACCGCATGGA GGTCCAGGCCCACATGGACCTCCTGGTCCACCAGGGGCACCAATGGGCCCCTACAACCCA GGGCCATACAACCAGGGACCTCCAGGGCCTCATGGGCCGCCTGCTCCTTACCAGCCTCAG GGATGGGGCAATGGTTACCCACACTGGCAACAGGGACAGCCTGATCCAAATAAAGCAGCA GCTGATGCCAATGCAGCAGCATGGGCAGCCTACTATGCCCAGTATGGTCAACAACCACAG GCTCCAATGACCCCAACAAGTGGAGCTCCTGGCACAACTCAAAGCAATGGCCAAGGTCAA CAGAGTCAGCAACCTCAGGACTACACCAAAGCCTGGGAGGAGTATTACAAGAAACAAGGT CAAGCGGCATCTCAGGCTCCAGCAGCTGCAGCACCTCCAGCCTCTCAGCCTGGAGGACAG CCAGACTACAGCGCTGCCTGGGCAGAGTACTACCGCCAGCAAGCAGCATACTATGGCACA CCCAACCCTCAATCCATGGGTGCAGCACCACAAGCCCCCCAGGGCCAGTAATGTGAAGTG GACATAAAGTAAATGCTACATTGTCGAAAACAAAATCCTATGTTAAATGTTTGGATGCAG ACGCCTTGATGAAGATCTTAAATTTCCTTGGTTTCAAAGTGTTTCACATAGATGACAGAT AACCCAGCGAACACGTCCTCTTTAATTTTTTCTTTTTTTTTTCTTTCTGTAAATGCTCTT TGTTTTTAATAAGGTAATTATACATATGGTCATTCCAGCCCTGTATCTACATTAAATGTG GTTAGAATTCATGTTTATTAAACTGTAAGACATTGCCATGTAAATCATCTCATTTTTAAA ATGCCTATTGCTTGTTGTGTTTTTGCAATAAACAAACTTA



consensusID : consensus_2118#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 579
fasta sequence
                              [AGTTTTACCTGACTGTCCTGGGAAAAGAACAAATGTATATATAGACACACAGCACTAAAAATATGTAACAATGCAACCACTTTTTCAGGGCAACATGAGGAAAAATACTTGCTTACCGCATTTCTAAATTTGCCTGTGGAGGAGGAAGCGTCTATAAAAAGGCAAAACAAAACAGTGTATACACTACCTCAACGTGAGCAAACCAGGCAAAATGGTTTAAAAAAACACCACAGCAATGGAGATAAAGAGTTAGAAACCTGTCAACTGCATAAACAGCTACCTACTGCTAAAATCAGTAATGTCACGGAAACAATCAACAATCAAGGTTCTAGCAACAAGGACATTTGGTGGTCCTGATTACTGGGAATTAATGAGCGCATGTACTCTACGAGCCTTTAGACAGTTGGAGAGACAGGAAAGCATAACCGAGTCATCCTTTTGAAACCATTAACCCAAGACATTTTAGCAGCATACCCCAGAGAACAAAAAATGCAGAAAGCCCACATTTGAATTTAGAACCACCCCAACTTACCACACAGGAGTTTTAAGTTTGTTTATTGCAAAAACACAACAAGCAAT]

[+] EMBL CA332560             [AGTTTTACCTGACTGTCCTGGGAAAAGAACAAATGTATATATAGACACACAGCACTAAAAATATGTAACAATGCAACCACTTTTTCAGGGCAACATGAGGAAAAATACTTGCTTACCGCATTTCTAAATTTGCCTGTGGAGGAGGAAGCGTCTATAAAAAGGCAAAACAAAACAGTGTATACACTACCTCAACGTGAGCAAACCAGGCAAAATGGTTTAAAAAAACACCACAGCAATGGAGATAAAGAGTTAGAAACCTGTCAACTGCATAAACAGCTACCTACTGCTAAAATCAGTAATGTCACGGAAACAATCAACAATCAAGGTTCTAGCAACAAGGACATTTGGTGGTCCTGATTACTGGGAATTAATGAGCGCATGTACTCTACGAGCCTTTAGACAGTTGGAGAGACAGGAAAGCATAACCGAGTCATCCTTTTGAAACCATTAACCCAAGACATTTTAGCAGCATACCCCAGAGAACAAAAAATGCAGAAAGCCCACATTTGAATTTAGAACCACCCCAACTTACCACACAGGAGTTTTAAGTTTGTTTATTGCAAAAACACAACAAGCAAT]


>consensus_2118#1 AGTTTTACCTGACTGTCCTGGGAAAAGAACAAATGTATATATAGACACACAGCACTAAAA ATATGTAACAATGCAACCACTTTTTCAGGGCAACATGAGGAAAAATACTTGCTTACCGCA TTTCTAAATTTGCCTGTGGAGGAGGAAGCGTCTATAAAAAGGCAAAACAAAACAGTGTAT ACACTACCTCAACGTGAGCAAACCAGGCAAAATGGTTTAAAAAAACACCACAGCAATGGA GATAAAGAGTTAGAAACCTGTCAACTGCATAAACAGCTACCTACTGCTAAAATCAGTAAT GTCACGGAAACAATCAACAATCAAGGTTCTAGCAACAAGGACATTTGGTGGTCCTGATTA CTGGGAATTAATGAGCGCATGTACTCTACGAGCCTTTAGACAGTTGGAGAGACAGGAAAG CATAACCGAGTCATCCTTTTGAAACCATTAACCCAAGACATTTTAGCAGCATACCCCAGA GAACAAAAAATGCAGAAAGCCCACATTTGAATTTAGAACCACCCCAACTTACCACACAGG AGTTTTAAGTTTGTTTATTGCAAAAACACAACAAGCAAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2118#0      TCTGGAGCAAGGATTGAGTTGCAGAGGAATCCACCACCTAACTCTGATCCCAGTATCAAG 60
consensus_2118#1      ------------------------------------------------------------
                                                                                  

consensus_2118#0      ATGTTCACAGTTCGTGGCTCTCCTCAGCAGATTGACTATGCCAGACAGCTAGTAGAGGAG 120
consensus_2118#1      ------------------------------------------------------------
                                                                                  

consensus_2118#0      AAGATCGGGGGACCAGTTACTCCAATGGGTGGTCCACATGGCCCCCCTGGACCGCATGGA 180
consensus_2118#1      ------------------------------------------------------------
                                                                                  

consensus_2118#0      GGTCCAGGCCCACATGGACCTCCTGGTCCACCAGGGGCACCAATGGGCCCCTACAACCCA 240
consensus_2118#1      ------------------------------------------------------------
                                                                                  

consensus_2118#0      GGGCCATACAACCAGGGACCTCCAGGGCCTCATGGGCCGCCTGCTCCTTACCAGCCTCAG 300
consensus_2118#1      --------------------------------------AGTTTTACCTGACTGTCCTGGG 22
                                                               *   *** **   ***  *

consensus_2118#0      GGATGGGGCAATGGTTACCCACACTGGCAACAGGGACAGCCTGATCCAAATAAAGCAGCA 360
consensus_2118#1      AAAAGAACAAATGTATATATAGACACACAGCACTAAAAATATG----TAACAATGCAACC 78
                        * *    ****  **   * **   ** **   * *   **     ** ** *** * 

consensus_2118#0      GCTGATGCCAATGCAGCAGCATGGGCAGCCTACTATGCCCAGTATGGTCAACAACCACAG 420
consensus_2118#1      ACTTTT-TCAGGGCAACATGAGGAAAAA--TACT-TGCTTA-------CCGCATTTCTAA 127
                       **  *  **  *** **  * *   *   **** ***  *       *  **     * 

consensus_2118#0      GCTCCAATGACCCCAACAAGTGGAGCTCCTGGCACAACTCAAAGCAATGGCCAAGGTCAA 480
consensus_2118#1      ATT----TGCCTGTGGAGGAGGAAGCGTCTATAAAAAGGCAAAACAAAA--CAGTGTATA 181
                        *    ** *          * ***  **   * **  **** ***    **  **  *

consensus_2118#0      CAGAGTCAGCAACCTCAG--GACTACACCAAA-GCCTGGGAGGAGTATTACAAGAAACAA 537
consensus_2118#1      CACTACCT-CAACGTGAGCAAACCAGGCAAAATGGTTTAAAAAAACACCACAGCAATGGA 240
                      **    *  **** * **   ** *  * *** *  *   *  *  *  ***  **   *

consensus_2118#0      GGTCAAGCGGCATCTCAGGCTCCAGCAGCTGCAGCACCTCCAGCCTCTCAGCCTGGAGGA 597
consensus_2118#1      GATAAAGAG----TTAGAAACCTGTCAACTGCATAAAC---AGCTACCTACTGCTAAAAT 293
                      * * *** *     *      *   ** *****  * *   ***  *  *      *   

consensus_2118#0      CAGCCAGACTACAGCGCTGCCTGGGCAGAGTACTACCGCCAGCAAGCAGCATACTATGGC 657
consensus_2118#1      CAGTAATGTCACGGAAACAATCAACAATCAAGGTTCTAGCAACAAGGA-CATTTGGTGGT 352
                      ***  *    ** *            *      * *   ** **** * ***    *** 

consensus_2118#0      ACACCCAACCCTCAATCCATGGGTGCA-GCACCACAAGCCCCCCAGGGCCAGTAATGTGA 716
consensus_2118#1      CCTGATTACTGGGAATTAATGAGCGCATGTACTCTACGAGCCTTTAGACAGTTGGAGAGA 412
                       *     **    ***  *** * *** * **   * *  **    * *   *   * **

consensus_2118#0      AGTGGACATAAAGTAAATGCTACATTGTCGAAAACAAAATCCTATGTTAAATGTTTGGAT 776
consensus_2118#1      CAGGAAAGCATAACCGA-GTCATCCTTTTGAAACCATTAACCCAAGACAT---TTTAGCA 468
                         * *   * *    * *  *   * * **** **  * ** * *  *    *** *  

consensus_2118#0      GCAGACGCCTTGATGAAGATCTTAAATTTCCTTGGTTTCAAAGTGTTTCACATAGATGAC 836
consensus_2118#1      GCATACCCC-----AGAGAACAAAAAATGCAGAAAGCCCACAT--TTGAATTTAGAACCA 521
                      *** ** **       *** *  *** * *        ** *   **  *  ****    

consensus_2118#0      AGATAACCCAGCGAACACGTCCTCTTTAATTTTTTCTTTTTTTTTTCTTTCTGTAAATGC 896
consensus_2118#1      CCCCAACTTACC--ACACAGGAGTTTTAAGTTTGT-TTATTGCAAAAACACAACAAGCAA 578
                          ***  * *  ****      ***** *** * ** **         *   **    

consensus_2118#0      TCTTTGTTTTTAATAAGGTAATTATACATATGGTCATTCCAGCCCTGTATCTACATTAAA 956
consensus_2118#1      T----------------------------------------------------------- 579
                      *                                                           

consensus_2118#0      TGTGGTTAGAATTCATGTTTATTAAACTGTAAGACATTGCCATGTAAATCATCTCATTTT 1016
consensus_2118#1      ------------------------------------------------------------
                                                                                  

consensus_2118#0      TAAAATGCCTATTGCTTGTTGTGTTTTTGCAATAAACAAACTTA 1060
consensus_2118#1      --------------------------------------------
                                                                  




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)