These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2126#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 770 fasta sequence [GCGGCGATGCGCAGCGCTTGATAGCTTTCCTCTTTTCGTGAATGGCCTTATAAATAAATCATACTAAAATTAATTGTCATTCGGGTCCTTGTTGTTAAAGGGCCTCATTAGAAGGATAAATGTCTGATGCATCAGAAATACCTAAAAAAGAAGAGGGGGCTTTAGCACCTGAGCCAGAGGAAGAGTCCGACGACTGCGGTGAGGACGAGGCTACAGAAGACATGGAGTTCCTGCGTAATCTTTTCTCGAGAAACCTGGGCATTGGCACCCCAGACAAGGTTCTCGATGAGCTGACTCTGGAGGGAGTAGCACAGTATATAAAGAGTGGAAAATGTAAAAACATCGTCTGCATGGTTGGAGCAGGGATATCCACCTCGGCTGGGATCCCTGATTTTCGCTCACCTGGAACTGGCCTGTATGCAAACCTGCAGAAGTATAACCTGCCGTACCCAGAGGCGATCTTCCAGATTGATTACTTCAAGAAACATCCAGAGCCTTTCTTTGCTTTGGCCAGAGAGCTTTACCCAGGACAGTTTAAGCCCACAGTTTGTCACTACTTCATGAAGCTGCTGAAGGATAAAGGACTCCTGAGGCGGTGCTACTCGCAGAATATTGACACTCTGGAGCGTGTGGCTGGCCTCGAGGGGGACGACCTCATTGAAGCTCATGGAACGTTCTACACATCCCACTGTGTCAGTTTCTGCTGCCGCAAGGAGTACTCGCTGGGCTGGATGGAAGAAAAAATCTTTTCCGACGACGTTCCCCGGTGT] [+] EMBL CA590977 [GCGGCGATGCGCAGCGCTTGATAGCTTTCCTCTTTTCGTGAATGGCCTTATAAATAAATCATACTAAAATTAATTGTCATTCGGGTCCTTGTTGTTAAAGGGCCTCATTAGAAGGATAAATGTCTGATGCATCAGAAATACCTAAAAAAGAAGAGGGGGCTTTAGCACCTGAGCCAGAGGAAGAGTCCGACGACTGCGGTGAGGACGAGGCTACAGAAGACATGGAGTTCCTGCGTAATCTTTTCTCGAGAAACCTGGGCATTGGCACCCCAGACAAGGTTCTCGATGAGCTGACTCTGGAGGGAGTAGCACAGTATATAAAGAGTGGAAAATGTAAAAACATCGTCTGCATGGTTGGAGCAGGGATATCCACCTCGGCTGGGATCCCTGATTTTCGCTCACCTGGAACTGGCCTGTATGCAAACCTGCAGAAGTATAACCTGCCGTACCCAGAGGCGATCTTCCAGATTGATTACTTCAAGAAACATCCAGAGCCTTTCTTTGCTTTGGCCAGAGAGCTTTACCCAGGACAGTTTAAGCCCACAGTTTGTCACTACTTCATGAAGCTGCTGAAG ] [+] EMBL CA846069 [ CGTGAATGGCCTTATAAATAAATCATACTAAAATTAATTGTCATTCGGGTCCTTGTTGTTAAAGGGCCTCATTAGAAGGATAAATGTCTGATGCATCAGAAATACCTAAAAAAGAAGAGGGGGCTTTAGCACCTGAACCAGAGGAAGAGTCCGACGACTGCGGTGAGGACGAGGCTACAGAAGACATGGAGTTCCTGCGTAATCTTTCCTCGAGAAACCTGGGCATTGGCACCCCAGACAAGGTTCTCGATGAGCTGACTCTGGAGGGAGTAGCACAGTATATAAAGAGTGGAAAATGTAAAAACATCGTCTGCATGGTTGGAGCAGGGATATCCACCTCGGCTGGGATCCCTGATTTTCGCTCACCTGGAACTGGCCTGTATGCAAACCTGCAGAAGTATAACCTGCCGTACCCAGAGGCGATCTTCCAGATTGATTACTTCAAGAAACATCCAGAGCCTTTCTTTGCTTTGGCCAGAGAGCTTTACCCAGGACAGTTTAAGCCCACAGTTTGTCACTACTTCATGAAGCTGCTGAAG ] [+] EMBL CA332885 [ AGAGGGGGCTTTAGCACCAGAGCCAGAGGAAGAGTCCGACGACTGCGGTGAGGACGAGGCTACAGAAGACATGGAGTTCCTGCGTAATCTTTTCTCGAAAAACCTGGGCATTGGCACCCCAGACAAGGTTCTCGATGAGCTGACTCTGGAGGGAGTAGCACAGTATATAAAGAGTGGAAAATGTAAAAACATCGTCTGCATGGTTGGAGCAGGGATATCCACCTCGGCTGGGATCCCTGATTTTCGCTCACCTGGAACTGGCCTGTATGCAAACCTGCAGAAGTATAACCTGCCGTACCCAGAGGCGATCTTCCAGATTGATTACTTCAAGAAACATCCAGAGCCTTTCTTTGCTTTGGCCAGAGAGCTTTACCCAGGACAGTTTAAGCCCACAGTTTGTCACTACTTCATGAAGCTGCTGAAGGATAAAGGACTCCTGAGGCGGTGCTACTCGCAGAATATTGACACTCTGGAGCGTGTGGCTGGCCTCGAGGGGGACGACCTCATTGAAGCTCATGGAACGTTCTACACATCCCACTGTGTCAGTTTCTGCTGCCGCAAGGAGTACTCGCTGGGCTGGATGGAAGAAAAAATCTTTTCCGACGACGTTCCCCGGTGT] consensusID : consensus_2126#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 545 fasta sequence [ACAATAAGATATCTGCGGCGATGCGCAGCGCTTGATAGCTTTCCCTATAACGTGAATGGCCTTATAAATAAATCATACTAAAATTAATTGTCATTCGGGTCCTTGTTGTTAAAGGGCCTCATTAGAAGGATAAATGTCTGATGCATCAGGAAGAGTCCGACGACTGCGGTGAGGACGAGGCTACAGAAGACATGGAGTTCCTGCGTAATCTTTTCTCGAGAAACCTGGGCATTGGCACCCCAGACAAGGTTCTCGATGAGCTGACTCTGGAGGGAGTAGCACAGTATATAAAGAGTGGAAAATGTAAAAACATCGTCTGCATGGTTGGAGCAGGGATATCCACCTCGGCTGGGATCCCTGATTTTCGCTCACCTGGAACTGGCCTGTATGCAAACCTGCAGAAGTATAACCTGCCGTACCCAGAGGCGATCTTCCAGATTGATTACTTCAAGAAACATCCAGAGCCTTTCTTTGCTTTGGGCAGAGAGCTTTACCCAGGACAGTTTAAGCCCACAGTTTGGCACTACTTCATGAAGCTGCTGGAG] [+] EMBL CA588522 [ACAATAAGATATCTGCGGCGATGCGCAGCGCTTGATAGCTTTCCCTATAACGTGAATGGCCTTATAAATAAATCATACTAAAATTAATTGTCATTCGGGTCCTTGTTGTTAAAGGGCCTCATTAGAAGGATAAATGTCTGATGCATCAGGAAGAGTCCGACGACTGCGGTGAGGACGAGGCTACAGAAGACATGGAGTTCCTGCGTAATCTTTTCTCGAGAAACCTGGGCATTGGCACCCCAGACAAGGTTCTCGATGAGCTGACTCTGGAGGGAGTAGCACAGTATATAAAGAGTGGAAAATGTAAAAACATCGTCTGCATGGTTGGAGCAGGGATATCCACCTCGGCTGGGATCCCTGATTTTCGCTCACCTGGAACTGGCCTGTATGCAAACCTGCAGAAGTATAACCTGCCGTACCCAGAGGCGATCTTCCAGATTGATTACTTCAAGAAACATCCAGAGCCTTTCTTTGCTTTGGGCAGAGAGCTTTACCCAGGACAGTTTAAGCCCACAGTTTGGCACTACTTCATGAAGCTGCTGGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2126#0 --------------GCGGCGATGCGCAGCGCTTGATAGCTTTCCTCTTTTCGTGAATGGC 46 consensus_2126#1 ACAATAAGATATCTGCGGCGATGCGCAGCGCTTGATAGCTTTCCCTATAACGTGAATGGC 60 ****************************** * ********** consensus_2126#0 CTTATAAATAAATCATACTAAAATTAATTGTCATTCGGGTCCTTGTTGTTAAAGGGCCTC 106 consensus_2126#1 CTTATAAATAAATCATACTAAAATTAATTGTCATTCGGGTCCTTGTTGTTAAAGGGCCTC 120 ************************************************************ consensus_2126#0 ATTAGAAGGATAAATGTCTGATGCATCAGAAATACCTAAAAAAGAAGAGGGGGCTTTAGC 166 consensus_2126#1 ATTAGAAGGATAAATGTCTGATGCATCAG------------------------------- 149 ***************************** consensus_2126#0 ACCTGAGCCAGAGGAAGAGTCCGACGACTGCGGTGAGGACGAGGCTACAGAAGACATGGA 226 consensus_2126#1 -------------GAAGAGTCCGACGACTGCGGTGAGGACGAGGCTACAGAAGACATGGA 196 *********************************************** consensus_2126#0 GTTCCTGCGTAATCTTTTCTCGAGAAACCTGGGCATTGGCACCCCAGACAAGGTTCTCGA 286 consensus_2126#1 GTTCCTGCGTAATCTTTTCTCGAGAAACCTGGGCATTGGCACCCCAGACAAGGTTCTCGA 256 ************************************************************ consensus_2126#0 TGAGCTGACTCTGGAGGGAGTAGCACAGTATATAAAGAGTGGAAAATGTAAAAACATCGT 346 consensus_2126#1 TGAGCTGACTCTGGAGGGAGTAGCACAGTATATAAAGAGTGGAAAATGTAAAAACATCGT 316 ************************************************************ consensus_2126#0 CTGCATGGTTGGAGCAGGGATATCCACCTCGGCTGGGATCCCTGATTTTCGCTCACCTGG 406 consensus_2126#1 CTGCATGGTTGGAGCAGGGATATCCACCTCGGCTGGGATCCCTGATTTTCGCTCACCTGG 376 ************************************************************ consensus_2126#0 AACTGGCCTGTATGCAAACCTGCAGAAGTATAACCTGCCGTACCCAGAGGCGATCTTCCA 466 consensus_2126#1 AACTGGCCTGTATGCAAACCTGCAGAAGTATAACCTGCCGTACCCAGAGGCGATCTTCCA 436 ************************************************************ consensus_2126#0 GATTGATTACTTCAAGAAACATCCAGAGCCTTTCTTTGCTTTGGCCAGAGAGCTTTACCC 526 consensus_2126#1 GATTGATTACTTCAAGAAACATCCAGAGCCTTTCTTTGCTTTGGGCAGAGAGCTTTACCC 496 ******************************************** *************** consensus_2126#0 AGGACAGTTTAAGCCCACAGTTTGTCACTACTTCATGAAGCTGCTGAAGGATAAAGGACT 586 consensus_2126#1 AGGACAGTTTAAGCCCACAGTTTGGCACTACTTCATGAAGCTGCTGGAG----------- 545 ************************ ********************* ** consensus_2126#0 CCTGAGGCGGTGCTACTCGCAGAATATTGACACTCTGGAGCGTGTGGCTGGCCTCGAGGG 646 consensus_2126#1 ------------------------------------------------------------ consensus_2126#0 GGACGACCTCATTGAAGCTCATGGAACGTTCTACACATCCCACTGTGTCAGTTTCTGCTG 706 consensus_2126#1 ------------------------------------------------------------ consensus_2126#0 CCGCAAGGAGTACTCGCTGGGCTGGATGGAAGAAAAAATCTTTTCCGACGACGTTCCCCG 766 consensus_2126#1 ------------------------------------------------------------ consensus_2126#0 GTGT 770 consensus_2126#1 ---- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |