These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2130#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 548 fasta sequence [ATCGTCCAGCAGTGGACAATCATCAAGTTTTCCTTGATGACATTTTCGATTTCATGCTTTTTGTTTTTTCCTCCTCTCTTTTTAAATTCTGAGAAGAAAATAAGAAACAGCGCTTCTATATCCAGAGAGCAAATTACTTGCTGAGTGCGTCACGCTACAGCTGCTCGGAGAAATGTTGTTTTATGCTAATCTTTATTCATTTTAATATATTTTTAATATGCTTTGATAATGAATCATGTTAGATGTGTGTGCTGTAGAGCATTAGGGTAAAAGCTATTATTGCCATGTTACACTTGGTTCAAGATTCAAATGATCATTGTGAGTTTCTCTTATTATGCTCGATTAAAACACAGTTCTAAACACTTTATTTCATTCAGCTCTTTAGCTTCGCACTGACTCCTGTGCCTGAAGTTACTGAGCTGATGAATCACGTGTTTATTCAAATCATAACTCCAAAAATGTTCAACTGGTTTGGAATTTTTTTTACATGGATAATTCATTCAAATGATCATTGTGAGTTTCTCTCATCAATAAAGGATTACCCTACA] [+] EMBL FR0056825 [ATCGTCCAGCAGTGGACAATCATCAAGTTTTCCTTGATGACATTTTCGATTTCATGCTTTTTGTTTTTTCCTCCTCTCTTTTTAAATTCTGAGAAGAAAATAAGAAACAGCGCTTCTATATCCAGAGAGCAAATTACTTGCTGAGCGCGTCGCGCTACAGCTGCTCGGAGAAATGTTGTTTTATGCTAATCTTTATTCATTTTAATATATTTTTAATATGCTTTGATAATGAATCATGTTAGATGTGTGTGCTGTAGAGCATTAGGGTAAAAGCTATTATTGCCATGTTACACTTGGTTCAAGATTCAAATGATCATTGTGAGTTTCTCTTATTATGCTCGATTAAAACACAGTTCTAAACACTTTATTTCATTCAGCTCTTTAGCTTCGCACTGACTCCTGTGCCTGAAGTTACTGAGCTGATGAATCACGTGTTTAATCAAATCATAACTCC AAAATGTTCAACTGGTTTGGGATTTTTTTTA ] [-] EMBL CA329382 [ TCATCAAGTTTTCCTTGATGACATTTTCGATTTCATGCTTTTTGTTTTTTCCTCCTCTCTTTTTAAATTCTGAGAAGAAAATAAGAAACAGCGCTTCTATATCCAGAGAGCAAATTACTTGCTGAGTGCGTCACGCTACAGCTGCTCGGAGAAATGTTGTTTTATGCTAATCTTTATTCATTTTAATATATTTTTAATATGCTTTGATAATGAATCATGTTAGATGTGTGTGCTGTAGAGCATTAGGGTAAAAGCTATTATTGCCATGTTACACTTGGTTCAAGATTCAAATGATCATTGTGAGTTTCTCTTATTATGCTCGATTAAAACACAGTTCTAAACACTTTATTTCATTCAGCTCTTTAGCTTCGCACTGACTCCTGTGCCTGAAGTTACTGAGCTGATGAATCACGTGTTTATTCAAATCATAACTCCAAAAATGTTCAACTGGTTTGGAATTTTTTTTACATGGATAATTCATTCAAATGATCATTGTGAGTTTCTCTCATCAATAAAGGATTACC ] [-] EMBL CA331808 [ TTTCATGCTTTTTGTTTTTTCCTCCTCTCTTTTTAAATTCTGAGAAGAAAATAAGAAACAGCGCTTCTATATCCAGAGAGCAAATTACTTGCTGAGTGCGTCACGCTACAGCTGCTCGGAGAAATGTTGTTTTATGCTAATCTTTATTCATTTTAATATATTTTTAATATGCTTTGATAATGAATCATGTTAGATGTGTGTGCTGTAGAGCATTAGGGTAAAAGCTATTATTGCCATGTTACACTTGGTTCAAGATTCAAATGATCATTGTGAGTTTCTCTTATTATGCTCGATTAAAACACAGTTCTAAACACTTTATTTCATTCAGCTCTTTAGCTTCGCACTGACTCCTGTGCCTGAAGTTACTGAGCTGATGAATCACGTGTTTATTCAAATCATAACTCCAAAAATGTTCAACTGGTTTGGAATTTTTTTTACATGGATAATTCATTCAAATGATCATTGTGAGTTTCTCTCATCAATAAAGGATTACCCTACA] consensusID : consensus_2130#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 456 fasta sequence [GTTTCTAGATCACATCTGTGGTCAAGATTTCCTTATCTCACCAGCGACATTTTCGATTTCATGCTTTTTGTTTTTTCCTCCTCTCTTTTTAAATTCTGAGAAGAAAATAAGAAACAGCGCTTCTATATCCAGAGAGCAAATTACTTGCTGAGCGCGTCGCGCTACAGCTGCTCGGAGAAATGTTGTTTTATGCTAATCTTTATTCATTTTGATACATTTTTAATATGCTTTGATAATGAATCATGTTAGATGTGTGTGCTGTAGAGCATTAGGGTAAAAGCTATTATTGCCATGTTACACTTGGTTCAAGATTCAAATGATCATTGTGAGTTTCTCTTATTATGCTCGATTAAAACACAGTTCTAAACACTTTATTTCATTCAGCTCTTTAGCTTCGCACTGACTCCTGTGCCTGAAGTTACTGAGCTGATGAATCACGTGTTTATTCAAATCATA] [-] EMBL CA329663 [GTTTCTAGATCACATCTGTGGTCAAGATTTCCTTATCTCACCAGCGACATTTTCGATTTCATGCTTTTTGTTTTTTCCTCCTCTCTTTTTAAATTCTGAGAAGAAAATAAGAAACAGCGCTTCTATATCCAGAGAGCAAATTACTTGCTGAGCGCGTCGCGCTACAGCTGCTCGGAGAAATGTTGTTTTATGCTAATCTTTATTCATTTTGATACATTTTTAATATGCTTTGATAATGAATCATGTTAGATGTGTGTGCTGTAGAGCATTAGGGTAAAAGCTATTATTGCCATGTTACACTTGGTTCAAGATTCAAATGATCATTGTGAGTTTCTCTTATTATGCTCGATTAAAACACAGTTCTAAACACTTTATTTCATTCAGCTCTTTAGCTTCGCACTGACTCCTGTGCCTGAAGTTACTGAGCTGATGAATCACGTGTTTATTCAAATCATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2130#0 ------ATCGTCCAGCAGTGGACAATCATCAAGT-TTTCCTTGATGACATTTTCGATTTC 53 consensus_2130#1 GTTTCTAGATCACATCTGTGGTCAAGATTTCCTTATCTCACCAGCGACATTTTCGATTTC 60 * ** * **** *** * * * ** *************** consensus_2130#0 ATGCTTTTTGTTTTTTCCTCCTCTCTTTTTAAATTCTGAGAAGAAAATAAGAAACAGCGC 113 consensus_2130#1 ATGCTTTTTGTTTTTTCCTCCTCTCTTTTTAAATTCTGAGAAGAAAATAAGAAACAGCGC 120 ************************************************************ consensus_2130#0 TTCTATATCCAGAGAGCAAATTACTTGCTGAGTGCGTCACGCTACAGCTGCTCGGAGAAA 173 consensus_2130#1 TTCTATATCCAGAGAGCAAATTACTTGCTGAGCGCGTCGCGCTACAGCTGCTCGGAGAAA 180 ******************************** ***** ********************* consensus_2130#0 TGTTGTTTTATGCTAATCTTTATTCATTTTAATATATTTTTAATATGCTTTGATAATGAA 233 consensus_2130#1 TGTTGTTTTATGCTAATCTTTATTCATTTTGATACATTTTTAATATGCTTTGATAATGAA 240 ****************************** *** ************************* consensus_2130#0 TCATGTTAGATGTGTGTGCTGTAGAGCATTAGGGTAAAAGCTATTATTGCCATGTTACAC 293 consensus_2130#1 TCATGTTAGATGTGTGTGCTGTAGAGCATTAGGGTAAAAGCTATTATTGCCATGTTACAC 300 ************************************************************ consensus_2130#0 TTGGTTCAAGATTCAAATGATCATTGTGAGTTTCTCTTATTATGCTCGATTAAAACACAG 353 consensus_2130#1 TTGGTTCAAGATTCAAATGATCATTGTGAGTTTCTCTTATTATGCTCGATTAAAACACAG 360 ************************************************************ consensus_2130#0 TTCTAAACACTTTATTTCATTCAGCTCTTTAGCTTCGCACTGACTCCTGTGCCTGAAGTT 413 consensus_2130#1 TTCTAAACACTTTATTTCATTCAGCTCTTTAGCTTCGCACTGACTCCTGTGCCTGAAGTT 420 ************************************************************ consensus_2130#0 ACTGAGCTGATGAATCACGTGTTTATTCAAATCATAACTCCAAAAATGTTCAACTGGTTT 473 consensus_2130#1 ACTGAGCTGATGAATCACGTGTTTATTCAAATCATA------------------------ 456 ************************************ consensus_2130#0 GGAATTTTTTTTACATGGATAATTCATTCAAATGATCATTGTGAGTTTCTCTCATCAATA 533 consensus_2130#1 ------------------------------------------------------------ consensus_2130#0 AAGGATTACCCTACA 548 consensus_2130#1 --------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |