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Takifugu rubripes
cluster # 2134 cluster # 2134       Sequences # 4       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2134#0 length = 618 sequences # 2  
 consensus_2134#1 length = 608 sequences # 2  
consensusID : consensus_2134#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 618
fasta sequence 
                              [TACCCTGCTCTGATGCTAGCCCGACGCTGTTAGCGCCTCCACCGATCTGATTAAAATATTCAGTCACTTTAATCGATATCACTCGCGTTTTTGACACACTGACACGGCGGCGTTGCTACGTCAAACTACGGAGAGCAACGTCCTGCTAACTGGATGCTAACAAGCTAACGTTGATGACGGGCGGACTTCCTCCGAGCTCGGCTATTTCAACGACGAGCTGGCGGCTCTTCACGCCACCCTGCCCATGAACATCCTCCTCAGGGGCTTCACACGCTCGCTCATCTTAGCTGTGTCAGTCTGCTCGACTGCTGCCTCAGGGCAGTTTGACGACCCTGCAGCAGGGGGCACGAGCATCCAAAACTGATGGTAAGCAGCGCACAGCGGGGGTGTTAGAGCCGCGTGTGGTGGAGAGTCACTGCGCCGCCTTCCAGTATCGAGCTGACAAGTATTCAGAGGGGAGGGGAGGGTCCTGAACGCAACGCCTCAGAGCCAGCGATGCCTGGATCCACGCCAGCCAGCAGCAAAGCTCGGGTCTACACCGACGTCCACACACAGAAGAACAGAGAGTACTGGGATTATGACGCACACGTGCCCAACTGGAGGCATCAAGACAACTAC]

[+] EMBL CA590658             [TACCCTGCTCTGATGCTAGCCCGACGCTGTTAGCGCCTCCACCGATCTGATTAAAATATTCAGTCACTTTAATCGATATCACTCGCGTTTTTGACACACTGACACGGCGGCGTTGCTACGTCAAACTACGGAGAGTAACGTCCTGCTAACTGGATGCTAACAAGCTAACGTTGATGACGGGCGGACTTCCTCCGAGCTCGGCTATTTCAACGACGAGCTGGCGGCTCTTCACGCCACCCTGCCCATCAACATCCTCCTCAGGGGCTTCACACGCTCGCTCATCTTAGCTCTGTCAGTCTGCTCGACTGCTGCCTCAGGCCAGTTTGAC ACCCTGCAGCAGGGGGCACGAGCATCCAAAACTGATGGTAAGCAGCGCACAGCGGGGGTGTTAGAGCCGCGTGTGGTGGAGAGTCACTGCGCCGCCTTCCAGTATCGAGCTGACAAGTATTCAGAGGGGAGGGGAGGGTCCTGAACGCAACGCCTCAGAGCCAGCGATGCCTGGATCCACGCCAGCCAGCAGCAAAGCTCGGGTCTACACCGACGTCCACACACAGAAGAACAGAGAGTACTGGGATTATGACGCACACGTGCCCAACTGGAGGCATCAAGACAACTAC]
[+] EMBL FR0061801            [                                                                                                                            ACTACGGACACCAACGTTCTGCTAACTGGTTGCTAACAAGCTAACGTTGATGACGTGTGGACTTCCTCCGAGCTCGGCTATTTCAACGACGAGCTGGCGGCTCTTTACGCCACCCTGCCCATGAACATCCTCCTCAGGGGCTTTACACGCTCGCTCATCTTAGCTGTGTCAGTCTGCTCGACTGCTGTCTTATGGCAGTTTGACGACCCTGCAGC TGGTGCACGAGCATCCAA                                                                                                                                                                                                                                                                    ]




>consensus_2134#0
TACCCTGCTCTGATGCTAGCCCGACGCTGTTAGCGCCTCCACCGATCTGATTAAAATATT
CAGTCACTTTAATCGATATCACTCGCGTTTTTGACACACTGACACGGCGGCGTTGCTACG
TCAAACTACGGAGAGCAACGTCCTGCTAACTGGATGCTAACAAGCTAACGTTGATGACGG
GCGGACTTCCTCCGAGCTCGGCTATTTCAACGACGAGCTGGCGGCTCTTCACGCCACCCT
GCCCATGAACATCCTCCTCAGGGGCTTCACACGCTCGCTCATCTTAGCTGTGTCAGTCTG
CTCGACTGCTGCCTCAGGGCAGTTTGACGACCCTGCAGCAGGGGGCACGAGCATCCAAAA
CTGATGGTAAGCAGCGCACAGCGGGGGTGTTAGAGCCGCGTGTGGTGGAGAGTCACTGCG
CCGCCTTCCAGTATCGAGCTGACAAGTATTCAGAGGGGAGGGGAGGGTCCTGAACGCAAC
GCCTCAGAGCCAGCGATGCCTGGATCCACGCCAGCCAGCAGCAAAGCTCGGGTCTACACC
GACGTCCACACACAGAAGAACAGAGAGTACTGGGATTATGACGCACACGTGCCCAACTGG
AGGCATCAAGACAACTAC

consensusID : consensus_2134#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 608
fasta sequence 
                              [TACCCTGCTCTGATGCTAGCCCGCCGCTGTTAGCGCCTCCACCGATCTGATTAAAATATTCAGTCACTTTAACCGATATCACTCGCGTTTTTGACACACTGACACGGCGGCGTTGCTACGTCAAACTACGGAGAGTGACGTCCTGCTAACTGGATGCTAACAAGCTAACGTTGATGACGGGCGGACTTCCTCCGAGCTCGGCTATTTCAACGACGAGGTTAGCCGGCTAACTGTAGCCGCGTTATTGATTTTGCGCCCCAGCAATGCAGTAAAAAATAAACAACCTTTCATCGACAACTGGGGGGTCTTCACGCCACCCTGCCCATCAACATCCTCCTCAGGGGCTTCACACGCTCGCTCATCTTAGCTCTGTCAGTCTGCTCGACTGCTGCCTCAGGCCAGTTTGACACCCTGCAGCAGGGGGCACGAGCATCCAAAACTGATGGTAAGCAGCGCACAGCGGGGGTGTTAGAGCCGCGTGTGGTGGAGAGTCACTGCGCCGCCTTCCAGTATCGAGCTGACAAGTATTCAGAGGGAGGGGAGGGTCCTGAACGCAACGCCTCAGAGCCAGCGATGCCTGGATCCACGCCAGCCAGCAGCAAAGCTCG]

[+] EMBL BU807181             [TACCCTGCTCTGATGCTAGCCCGCCGCTGTTAGCGCCTCCACCGATCTGATTAAAATATTCAGTCACTTTAATCGATATCACTCGCGTTTTTGACACACTGACACGGCGGCGTTGCTACGTCAAACTACGGAGAGTGACGTCCTGCTAACTGGATGCTAACAAGCTAACGTTGATGACGGGCGGACTTCCTCCGAGCTCGGCTATTTCAACGACGAGGTTAGCCGGCTAACTGTAGCCGCGTTATTGATTTTGCGCCCCAGCAATGCAGTAAAAAATAAACAACCTTTCATCGACAACTGGCGGCTCTTCACGCCACCCTGCCCATCAACATCCTCCTCAGGGGCTTCACACGCTCGCTCATCTTAGCTCTGTCAGTCTGCTCGACTGCTGCCTCAGGCCAGTTTGACACCCTGCAGCAGGGGGCACGAGCATCCAAAACTGATGGTAAGCAGCGCACAGCGGGGGTGTTAGAGCCGCGTGTGGTGGAGAGTCACTGCGCCGCCTTCCAGTATCGAGCTGACAAGTATTCAGAGGGAGGGGAGGGTCCTGAACGCAACGCCTCAGAGCCAGCGATGCCTGGATCCACGCCAGCCAGCAGCAAAGCTCG]
[+] EMBL FR0060579            [                                                                  CTTTAACCGATATCACTCGCGTTTTTGACACACTGACACGGCGTCGTTGCTACGTCAAACTACGGAGAGTAACGTCCTGCTAACTGGATGCTAACAAGCTAACGTTGATGACGGGCGGACTTCCTCCGAGCTCGGCTATTTCAACGACGAGGTTAGCCGGCTAACTGTAGCCGCGTTATTGATTTTGCGCCCCAGCAATGCAGTAAAAAATAAACAACCTTTCATCGACAACTGGGGGGTCTTCACGCCACCCTGCCCATCAA                                                                                                                                                                                                                                                                                       ]




>consensus_2134#1
TACCCTGCTCTGATGCTAGCCCGCCGCTGTTAGCGCCTCCACCGATCTGATTAAAATATT
CAGTCACTTTAACCGATATCACTCGCGTTTTTGACACACTGACACGGCGGCGTTGCTACG
TCAAACTACGGAGAGTGACGTCCTGCTAACTGGATGCTAACAAGCTAACGTTGATGACGG
GCGGACTTCCTCCGAGCTCGGCTATTTCAACGACGAGGTTAGCCGGCTAACTGTAGCCGC
GTTATTGATTTTGCGCCCCAGCAATGCAGTAAAAAATAAACAACCTTTCATCGACAACTG
GGGGGTCTTCACGCCACCCTGCCCATCAACATCCTCCTCAGGGGCTTCACACGCTCGCTC
ATCTTAGCTCTGTCAGTCTGCTCGACTGCTGCCTCAGGCCAGTTTGACACCCTGCAGCAG
GGGGCACGAGCATCCAAAACTGATGGTAAGCAGCGCACAGCGGGGGTGTTAGAGCCGCGT
GTGGTGGAGAGTCACTGCGCCGCCTTCCAGTATCGAGCTGACAAGTATTCAGAGGGAGGG
GAGGGTCCTGAACGCAACGCCTCAGAGCCAGCGATGCCTGGATCCACGCCAGCCAGCAGC
AAAGCTCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2134#0      TACCCTGCTCTGATGCTAGCCCGACGCTGTTAGCGCCTCCACCGATCTGATTAAAATATT 60
consensus_2134#1      TACCCTGCTCTGATGCTAGCCCGCCGCTGTTAGCGCCTCCACCGATCTGATTAAAATATT 60
                      *********************** ************************************

consensus_2134#0      CAGTCACTTTAATCGATATCACTCGCGTTTTTGACACACTGACACGGCGGCGTTGCTACG 120
consensus_2134#1      CAGTCACTTTAACCGATATCACTCGCGTTTTTGACACACTGACACGGCGGCGTTGCTACG 120
                      ************ ***********************************************

consensus_2134#0      TCAAACTACGGAGAGCAACGTCCTGCTAACTGGATGCTAACAAGCTAACGTTGATGACGG 180
consensus_2134#1      TCAAACTACGGAGAGTGACGTCCTGCTAACTGGATGCTAACAAGCTAACGTTGATGACGG 180
                      ***************  *******************************************

consensus_2134#0      GCGGACTTCCTCCGAGCTCGGCTATTTCAACGACGAG----------------------- 217
consensus_2134#1      GCGGACTTCCTCCGAGCTCGGCTATTTCAACGACGAGGTTAGCCGGCTAACTGTAGCCGC 240
                      *************************************                       

consensus_2134#0      ---------------------------------------------------------CTG 220
consensus_2134#1      GTTATTGATTTTGCGCCCCAGCAATGCAGTAAAAAATAAACAACCTTTCATCGACAACTG 300
                                                                               ***

consensus_2134#0      GCGGCTCTTCACGCCACCCTGCCCATGAACATCCTCCTCAGGGGCTTCACACGCTCGCTC 280
consensus_2134#1      GGGGGTCTTCACGCCACCCTGCCCATCAACATCCTCCTCAGGGGCTTCACACGCTCGCTC 360
                      * ** ********************* *********************************

consensus_2134#0      ATCTTAGCTGTGTCAGTCTGCTCGACTGCTGCCTCAGGGCAGTTTGACGACCCTGCAGCA 340
consensus_2134#1      ATCTTAGCTCTGTCAGTCTGCTCGACTGCTGCCTCAGGCCAGTTTGAC-ACCCTGCAGCA 419
                      ********* **************************** ********* ***********

consensus_2134#0      GGGGGCACGAGCATCCAAAACTGATGGTAAGCAGCGCACAGCGGGGGTGTTAGAGCCGCG 400
consensus_2134#1      GGGGGCACGAGCATCCAAAACTGATGGTAAGCAGCGCACAGCGGGGGTGTTAGAGCCGCG 479
                      ************************************************************

consensus_2134#0      TGTGGTGGAGAGTCACTGCGCCGCCTTCCAGTATCGAGCTGACAAGTATTCAGAGGGGAG 460
consensus_2134#1      TGTGGTGGAGAGTCACTGCGCCGCCTTCCAGTATCGAGCTGACAAGTATTCAGAGGG-AG 538
                      ********************************************************* **

consensus_2134#0      GGGAGGGTCCTGAACGCAACGCCTCAGAGCCAGCGATGCCTGGATCCACGCCAGCCAGCA 520
consensus_2134#1      GGGAGGGTCCTGAACGCAACGCCTCAGAGCCAGCGATGCCTGGATCCACGCCAGCCAGCA 598
                      ************************************************************

consensus_2134#0      GCAAAGCTCGGGTCTACACCGACGTCCACACACAGAAGAACAGAGAGTACTGGGATTATG 580
consensus_2134#1      GCAAAGCTCG-------------------------------------------------- 608
                      **********                                                  

consensus_2134#0      ACGCACACGTGCCCAACTGGAGGCATCAAGACAACTAC 618
consensus_2134#1      --------------------------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)