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Takifugu rubripes
cluster # 2157 cluster # 2157       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2157#0 length = 944 sequences # 3  
consensus_2157#1 length = 576 sequences # 1  

consensusID : consensus_2157#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 944
fasta sequence
                              [CCAGTATGAGAGATAGTGCGTATTTTATTCTGATAAGATAAAGAGGCGTCTCCAAAAGAAAAGCGGGGCCGCTTGATTTTTTTTAATTCATGCCGATGTGGATTTGAGAGTCAGACTGACAGGCCAACAGTCATGAATGACAATTTTAACCGAGCTCCAGGAGCTGGGAGAATCCGAAGTCCTCCTGCAGACCCTGGGTTTGTGGGCACCGGCGGGGATCCCAACACCAGCACCACTTTTTACAACCAAACGGGTTCTCCGCTGAGACAACCGCGAACATCCCCGTCTTTTACAGAGAGCCCGCACAACGACACGGCTGGTGAAGATCTAAAAAGGCAGAGCATCCCGCAGCAAAGTGCACACGCAAACAACACATCTTCCCCCGATAGATTTACCCAAGAGGCGCCTGCGGTGAACTCATCAACCCTCTCAGCCAGTGCTCCAGAGTTTGTACCAGCTGGGATGATGTGTGAGAACAACAATCTTTATTTTGACGGCGAACACTTTTATGGAGAACCATGCTTGGCTGACATGGTCACAGACTTTCTGGGTCACCTGAGCACCTCACCAGGGTCCTTTGAGTCGGATATTGGGTACATTAGCGACACCATCAATTCCTGGGGTAATACTGAAGAGACGTTGAATGAGCTTGTTGACCTGATCTTCACGCAGTCTACCACCATTCCAAACTTTTCTTACACGGGGGCCAGGCTTTGTAACTACCTGTCTCATCATCTCGCTATCAGCCCACCGAGCGGCAACTTCCGTCAGCTTCTCCTAAAAAGATGTCAAGTAAAATACCAGCAGAGGGACGCGGCTGCCAGCGGAGATGCCGAGGCTCAGAAGAAGCTCCACTCCTTTGTGCTCTTTCTCGGAGAGCTCTACCTTAACTTAGAGGTGAAGAGTGCAAAGGGGTCTCCAGATCGAGCTCATGTTCTGCTGTC]

[+] EMBL CA589755             [CCAGTATGAGAGATAGTGCGTATTTTATTCTGATAAGATAAAGAAGCGTCTCCAAAAGAAAAGCGGGGCCGCTTGATTTTTTTTAATTCATGCCGATGTGGATTTGAGAGTCAGACTGACAGGCCAACAGTCATGAATGACAATTTTAACCGAGCTCCAGGAGCTGGGAGAATCCGAAGTCCTCCTGCAGACCCTGGGTTTGTGGGCACCGGCGGGGATCCCAACACCAGCACCACTTTTTACAACCAAACGGGTTCTCCGCTGAGACAACCGCGAACATCCCCGTCTTTTACAGAGAGCCCGCACAACGACACGGCTGGTGAAGATCTAAAAAGGCAGAGCATCCCGCAGCAAAGTGCACACGCAAACAACACATCTTCCCCCGATAGATTTACCCAAGAGGCGCCTGCGGTGAACTCATCAACCCTCTCAGCCAGTGCTCCAGAGTTTGTACCAGCTGGGATGATGTGTGAGAACAACAATCTTTATTTTGACGGCGAACACTTTTATGGAGAACCATGCTTGGCTGACATGGTCACAGACTTTCTGGGTCACCTGAGCACCTCACCAGGGTCCTTTGAGTCGGATATTGCGTACATTAGCGAC                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CA590861             [    TATGAGAGATAGTGCGTATTTTATTCTGATAAGATAAAGAGGTGTCTCCAAAAGAAAAGCGGGGCCGCTTGATTTTTTTTAATTCATGCCGATGTGGATTTGAGAGTCAGACTGACAGGCCAACAGTCATGAATGACAATTTTAACCGAGCTCCAGGAGCTGGGAGAATCCGAAGTCCTCCTGCAGACCCTGGGTTTGTGGGCACCGCCGGGGATCCCAACACCAGCACCACTTTTTACAACCAAACGGTTTCTCCGCTGAGACAACCGCGAACATCCCCGTCTTTTACAGAGAGCCCGCACAACGACACGGCTGGTGAAGATCTAAAAAGGCAGAGCATCCCGCAGCAAAGTGCACACGCAAACAACACATCTTCCCCCGATAGATTTACCCAAGAGGCGCCTGCGGTGAACTCATCAACCCTCTCAGCCAGTGCTCCAGAGTTTGTACCAGCTGGGATGATGTGTGAGAACAACAATCTTTATTTTGACGGCGAACACTTTTATGGAGAACCATGCTTGGCTGACATGGTCACAGACTTTCTGGGTCACCTGAGCACCTCACCAGGGTCCTTTGAGTCGGATATTGGGTACATTAGCGACACCATCAATTCCTGGGTTAATACTGAAGAGACGTTGAATGAG                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BU807095             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ACCTGAGCACCTCACCAGGGTCCTTTGAGTCGGATATTGAGCACATTAGCGACACCATCAATTCCTGGGGTAATACTGAAGAGACGTTGAATGAGCTTGTTGACCTGATCTTCACGCAGTCTACCACCATTCCAAACTTTTCTTACACGGGGGCCAGGCTTTGTAACTACCTGTCTCATCATCTCGCTATCAGCCCACCGAGCGGCAACTTCCGTCAGCTTCTCCTAAAAAGATGTCAAGTAAAATACCAGCAGAGGGACGCGGCTGCCAGCGGAGATGCCGAGGCTCAGAAGAAGCTCCACTCCTTTGTGCTCTTTCTCGGAGAGCTCTACCTTAACTTAGAGGTGAAGAGTGCAAAGGGGTCTCCAGATCGAGCTCATGTTCTGCTGTC]


>consensus_2157#0 CCAGTATGAGAGATAGTGCGTATTTTATTCTGATAAGATAAAGAGGCGTCTCCAAAAGAA AAGCGGGGCCGCTTGATTTTTTTTAATTCATGCCGATGTGGATTTGAGAGTCAGACTGAC AGGCCAACAGTCATGAATGACAATTTTAACCGAGCTCCAGGAGCTGGGAGAATCCGAAGT CCTCCTGCAGACCCTGGGTTTGTGGGCACCGGCGGGGATCCCAACACCAGCACCACTTTT TACAACCAAACGGGTTCTCCGCTGAGACAACCGCGAACATCCCCGTCTTTTACAGAGAGC CCGCACAACGACACGGCTGGTGAAGATCTAAAAAGGCAGAGCATCCCGCAGCAAAGTGCA CACGCAAACAACACATCTTCCCCCGATAGATTTACCCAAGAGGCGCCTGCGGTGAACTCA TCAACCCTCTCAGCCAGTGCTCCAGAGTTTGTACCAGCTGGGATGATGTGTGAGAACAAC AATCTTTATTTTGACGGCGAACACTTTTATGGAGAACCATGCTTGGCTGACATGGTCACA GACTTTCTGGGTCACCTGAGCACCTCACCAGGGTCCTTTGAGTCGGATATTGGGTACATT AGCGACACCATCAATTCCTGGGGTAATACTGAAGAGACGTTGAATGAGCTTGTTGACCTG ATCTTCACGCAGTCTACCACCATTCCAAACTTTTCTTACACGGGGGCCAGGCTTTGTAAC TACCTGTCTCATCATCTCGCTATCAGCCCACCGAGCGGCAACTTCCGTCAGCTTCTCCTA AAAAGATGTCAAGTAAAATACCAGCAGAGGGACGCGGCTGCCAGCGGAGATGCCGAGGCT CAGAAGAAGCTCCACTCCTTTGTGCTCTTTCTCGGAGAGCTCTACCTTAACTTAGAGGTG AAGAGTGCAAAGGGGTCTCCAGATCGAGCTCATGTTCTGCTGTC



consensusID : consensus_2157#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 576
fasta sequence
                              [GATAGTGCGTATTTTATTCTGATAAGATAAAGAAGTGTCTCCAAAAGAAAAGCGGGGCCGCTTGATTTTTTTAATTCATGCCGATGTGGATTTGAGAGTCAGACTGACAGGCCAACAGTCATGAATGACAATTTTAACCGAGCTCCAGGAGCTGGGAGAATCCGAAGTCCTCCTGCAGACCCTGGGTTTGTGGGCACCGCCGGGGATCCCAACACCAGCACCACTTTTTACAACCAAACGGTTTCTCCGCTGAGACAACCGCGAACATCCCCGTCTTTTACAGAGAGCCCGCACAACGACACGGCTGGTGAAGATCTAAAAAGGCAGAGCATCCCGCAGCAAAGTGCACACGCAAACAACACATCTTCCCCCCCCCACAAATTTCCACCTGGAGCGCTTGAGCTGGACCACAGGTTCAGTCCGTTGTCACCCTCCCTTTATCACGTCAGGGCAATTTGGCAAGTTAACTTTGTTAAAGATGACGCGGAGCAGTTGCTTACAACAGCAAATTCATCAAATATTCCTCCCACTCACAGTGGAGGCACAAAAAAAAATGACCCAAATCAACACGTAGAC]

[+] EMBL CA845149             [GATAGTGCGTATTTTATTCTGATAAGATAAAGAAGTGTCTCCAAAAGAAAAGCGGGGCCGCTTGATTTTTTTAATTCATGCCGATGTGGATTTGAGAGTCAGACTGACAGGCCAACAGTCATGAATGACAATTTTAACCGAGCTCCAGGAGCTGGGAGAATCCGAAGTCCTCCTGCAGACCCTGGGTTTGTGGGCACCGCCGGGGATCCCAACACCAGCACCACTTTTTACAACCAAACGGTTTCTCCGCTGAGACAACCGCGAACATCCCCGTCTTTTACAGAGAGCCCGCACAACGACACGGCTGGTGAAGATCTAAAAAGGCAGAGCATCCCGCAGCAAAGTGCACACGCAAACAACACATCTTCCCCCCCCCACAAATTTCCACCTGGAGCGCTTGAGCTGGACCACAGGTTCAGTCCGTTGTCACCCTCCCTTTATCACGTCAGGGCAATTTGGCAAGTTAACTTTGTTAAAGATGACGCGGAGCAGTTGCTTACAACAGCAAATTCATCAAATATTCCTCCCACTCACAGTGGAGGCACAAAAAAAAATGACCCAAATCAACACGTAGAC]


>consensus_2157#1 GATAGTGCGTATTTTATTCTGATAAGATAAAGAAGTGTCTCCAAAAGAAAAGCGGGGCCG CTTGATTTTTTTAATTCATGCCGATGTGGATTTGAGAGTCAGACTGACAGGCCAACAGTC ATGAATGACAATTTTAACCGAGCTCCAGGAGCTGGGAGAATCCGAAGTCCTCCTGCAGAC CCTGGGTTTGTGGGCACCGCCGGGGATCCCAACACCAGCACCACTTTTTACAACCAAACG GTTTCTCCGCTGAGACAACCGCGAACATCCCCGTCTTTTACAGAGAGCCCGCACAACGAC ACGGCTGGTGAAGATCTAAAAAGGCAGAGCATCCCGCAGCAAAGTGCACACGCAAACAAC ACATCTTCCCCCCCCCACAAATTTCCACCTGGAGCGCTTGAGCTGGACCACAGGTTCAGT CCGTTGTCACCCTCCCTTTATCACGTCAGGGCAATTTGGCAAGTTAACTTTGTTAAAGAT GACGCGGAGCAGTTGCTTACAACAGCAAATTCATCAAATATTCCTCCCACTCACAGTGGA GGCACAAAAAAAAATGACCCAAATCAACACGTAGAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2157#0      CCAGTATGAGAGATAGTGCGTATTTTATTCTGATAAGATAAAGAGGCGTCTCCAAAAGAA 60
consensus_2157#1      -----------GATAGTGCGTATTTTATTCTGATAAGATAAAGAAGTGTCTCCAAAAGAA 49
                                 ********************************* * *************

consensus_2157#0      AAGCGGGGCCGCTTGATTTTTTTTAATTCATGCCGATGTGGATTTGAGAGTCAGACTGAC 120
consensus_2157#1      AAGCGGGGCCGCTTGATTTTTTT-AATTCATGCCGATGTGGATTTGAGAGTCAGACTGAC 108
                      *********************** ************************************

consensus_2157#0      AGGCCAACAGTCATGAATGACAATTTTAACCGAGCTCCAGGAGCTGGGAGAATCCGAAGT 180
consensus_2157#1      AGGCCAACAGTCATGAATGACAATTTTAACCGAGCTCCAGGAGCTGGGAGAATCCGAAGT 168
                      ************************************************************

consensus_2157#0      CCTCCTGCAGACCCTGGGTTTGTGGGCACCGGCGGGGATCCCAACACCAGCACCACTTTT 240
consensus_2157#1      CCTCCTGCAGACCCTGGGTTTGTGGGCACCGCCGGGGATCCCAACACCAGCACCACTTTT 228
                      ******************************* ****************************

consensus_2157#0      TACAACCAAACGGGTTCTCCGCTGAGACAACCGCGAACATCCCCGTCTTTTACAGAGAGC 300
consensus_2157#1      TACAACCAAACGGTTTCTCCGCTGAGACAACCGCGAACATCCCCGTCTTTTACAGAGAGC 288
                      ************* **********************************************

consensus_2157#0      CCGCACAACGACACGGCTGGTGAAGATCTAAAAAGGCAGAGCATCCCGCAGCAAAGTGCA 360
consensus_2157#1      CCGCACAACGACACGGCTGGTGAAGATCTAAAAAGGCAGAGCATCCCGCAGCAAAGTGCA 348
                      ************************************************************

consensus_2157#0      CACGCAAACAACACATCTTCCCCCG---ATAGATTTACCCAAGAGGCGCCTGCGGTGAAC 417
consensus_2157#1      CACGCAAACAACACATCTTCCCCCCCCCACAAATTTCCACCTGGAGCGCTTGAGCTGGAC 408
                      ************************    * * **** * *  *  **** ** * ** **

consensus_2157#0      TCATCAACCCTCTCAGCCAGTGCTCCAGAGTTTGTACCAGCTGGGATGATGTGTGAGAAC 477
consensus_2157#1      -CACAGGTTCAGTCCGTTGTCACCCTCCCTTTATCAC--GTCAGGGCAATTTGGCAAGTT 465
                       **      *  ** *      * *     **   **  *   **   ** **  *    

consensus_2157#0      AACAATCTTTATTTTGACGGCGAACACTTTTATGGAGAACCATGCTTGGCTGACATGG-T 536
consensus_2157#1      AACTTTGTTAAAGATGACGCGGAGCAGTTGCTTACAACAGCAAATTCATCAAATATTCCT 525
                      ***  * ** *   *****  ** ** **   *  *  * **   *   *  * **   *

consensus_2157#0      CACAGACTTTCTGG-GTCACCTGAGCACCTCACCAGGGTCCTTTGAGTCGGATATTGGGT 595
consensus_2157#1      CCCACTCACAGTGGAGGCACAAAAAAAAATGACCCAAATC----AACACGTAGAC----- 576
                      * **  *    *** * ***   *  *  * ***    **     *  ** * *      

consensus_2157#0      ACATTAGCGACACCATCAATTCCTGGGGTAATACTGAAGAGACGTTGAATGAGCTTGTTG 655
consensus_2157#1      ------------------------------------------------------------
                                                                                  

consensus_2157#0      ACCTGATCTTCACGCAGTCTACCACCATTCCAAACTTTTCTTACACGGGGGCCAGGCTTT 715
consensus_2157#1      ------------------------------------------------------------
                                                                                  

consensus_2157#0      GTAACTACCTGTCTCATCATCTCGCTATCAGCCCACCGAGCGGCAACTTCCGTCAGCTTC 775
consensus_2157#1      ------------------------------------------------------------
                                                                                  

consensus_2157#0      TCCTAAAAAGATGTCAAGTAAAATACCAGCAGAGGGACGCGGCTGCCAGCGGAGATGCCG 835
consensus_2157#1      ------------------------------------------------------------
                                                                                  

consensus_2157#0      AGGCTCAGAAGAAGCTCCACTCCTTTGTGCTCTTTCTCGGAGAGCTCTACCTTAACTTAG 895
consensus_2157#1      ------------------------------------------------------------
                                                                                  

consensus_2157#0      AGGTGAAGAGTGCAAAGGGGTCTCCAGATCGAGCTCATGTTCTGCTGTC 944
consensus_2157#1      -------------------------------------------------
                                                                       




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)