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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2157#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 944 fasta sequence
[CCAGTATGAGAGATAGTGCGTATTTTATTCTGATAAGATAAAGAGGCGTCTCCAAAAGAAAAGCGGGGCCGCTTGATTTTTTTTAATTCATGCCGATGTGGATTTGAGAGTCAGACTGACAGGCCAACAGTCATGAATGACAATTTTAACCGAGCTCCAGGAGCTGGGAGAATCCGAAGTCCTCCTGCAGACCCTGGGTTTGTGGGCACCGGCGGGGATCCCAACACCAGCACCACTTTTTACAACCAAACGGGTTCTCCGCTGAGACAACCGCGAACATCCCCGTCTTTTACAGAGAGCCCGCACAACGACACGGCTGGTGAAGATCTAAAAAGGCAGAGCATCCCGCAGCAAAGTGCACACGCAAACAACACATCTTCCCCCGATAGATTTACCCAAGAGGCGCCTGCGGTGAACTCATCAACCCTCTCAGCCAGTGCTCCAGAGTTTGTACCAGCTGGGATGATGTGTGAGAACAACAATCTTTATTTTGACGGCGAACACTTTTATGGAGAACCATGCTTGGCTGACATGGTCACAGACTTTCTGGGTCACCTGAGCACCTCACCAGGGTCCTTTGAGTCGGATATTGGGTACATTAGCGACACCATCAATTCCTGGGGTAATACTGAAGAGACGTTGAATGAGCTTGTTGACCTGATCTTCACGCAGTCTACCACCATTCCAAACTTTTCTTACACGGGGGCCAGGCTTTGTAACTACCTGTCTCATCATCTCGCTATCAGCCCACCGAGCGGCAACTTCCGTCAGCTTCTCCTAAAAAGATGTCAAGTAAAATACCAGCAGAGGGACGCGGCTGCCAGCGGAGATGCCGAGGCTCAGAAGAAGCTCCACTCCTTTGTGCTCTTTCTCGGAGAGCTCTACCTTAACTTAGAGGTGAAGAGTGCAAAGGGGTCTCCAGATCGAGCTCATGTTCTGCTGTC]
[+] EMBL CA589755 [CCAGTATGAGAGATAGTGCGTATTTTATTCTGATAAGATAAAGAAGCGTCTCCAAAAGAAAAGCGGGGCCGCTTGATTTTTTTTAATTCATGCCGATGTGGATTTGAGAGTCAGACTGACAGGCCAACAGTCATGAATGACAATTTTAACCGAGCTCCAGGAGCTGGGAGAATCCGAAGTCCTCCTGCAGACCCTGGGTTTGTGGGCACCGGCGGGGATCCCAACACCAGCACCACTTTTTACAACCAAACGGGTTCTCCGCTGAGACAACCGCGAACATCCCCGTCTTTTACAGAGAGCCCGCACAACGACACGGCTGGTGAAGATCTAAAAAGGCAGAGCATCCCGCAGCAAAGTGCACACGCAAACAACACATCTTCCCCCGATAGATTTACCCAAGAGGCGCCTGCGGTGAACTCATCAACCCTCTCAGCCAGTGCTCCAGAGTTTGTACCAGCTGGGATGATGTGTGAGAACAACAATCTTTATTTTGACGGCGAACACTTTTATGGAGAACCATGCTTGGCTGACATGGTCACAGACTTTCTGGGTCACCTGAGCACCTCACCAGGGTCCTTTGAGTCGGATATTGCGTACATTAGCGAC ]
[+] EMBL CA590861 [ TATGAGAGATAGTGCGTATTTTATTCTGATAAGATAAAGAGGTGTCTCCAAAAGAAAAGCGGGGCCGCTTGATTTTTTTTAATTCATGCCGATGTGGATTTGAGAGTCAGACTGACAGGCCAACAGTCATGAATGACAATTTTAACCGAGCTCCAGGAGCTGGGAGAATCCGAAGTCCTCCTGCAGACCCTGGGTTTGTGGGCACCGCCGGGGATCCCAACACCAGCACCACTTTTTACAACCAAACGGTTTCTCCGCTGAGACAACCGCGAACATCCCCGTCTTTTACAGAGAGCCCGCACAACGACACGGCTGGTGAAGATCTAAAAAGGCAGAGCATCCCGCAGCAAAGTGCACACGCAAACAACACATCTTCCCCCGATAGATTTACCCAAGAGGCGCCTGCGGTGAACTCATCAACCCTCTCAGCCAGTGCTCCAGAGTTTGTACCAGCTGGGATGATGTGTGAGAACAACAATCTTTATTTTGACGGCGAACACTTTTATGGAGAACCATGCTTGGCTGACATGGTCACAGACTTTCTGGGTCACCTGAGCACCTCACCAGGGTCCTTTGAGTCGGATATTGGGTACATTAGCGACACCATCAATTCCTGGGTTAATACTGAAGAGACGTTGAATGAG ]
[+] EMBL BU807095 [ ACCTGAGCACCTCACCAGGGTCCTTTGAGTCGGATATTGAGCACATTAGCGACACCATCAATTCCTGGGGTAATACTGAAGAGACGTTGAATGAGCTTGTTGACCTGATCTTCACGCAGTCTACCACCATTCCAAACTTTTCTTACACGGGGGCCAGGCTTTGTAACTACCTGTCTCATCATCTCGCTATCAGCCCACCGAGCGGCAACTTCCGTCAGCTTCTCCTAAAAAGATGTCAAGTAAAATACCAGCAGAGGGACGCGGCTGCCAGCGGAGATGCCGAGGCTCAGAAGAAGCTCCACTCCTTTGTGCTCTTTCTCGGAGAGCTCTACCTTAACTTAGAGGTGAAGAGTGCAAAGGGGTCTCCAGATCGAGCTCATGTTCTGCTGTC]
consensusID : consensus_2157#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 576 fasta sequence
[GATAGTGCGTATTTTATTCTGATAAGATAAAGAAGTGTCTCCAAAAGAAAAGCGGGGCCGCTTGATTTTTTTAATTCATGCCGATGTGGATTTGAGAGTCAGACTGACAGGCCAACAGTCATGAATGACAATTTTAACCGAGCTCCAGGAGCTGGGAGAATCCGAAGTCCTCCTGCAGACCCTGGGTTTGTGGGCACCGCCGGGGATCCCAACACCAGCACCACTTTTTACAACCAAACGGTTTCTCCGCTGAGACAACCGCGAACATCCCCGTCTTTTACAGAGAGCCCGCACAACGACACGGCTGGTGAAGATCTAAAAAGGCAGAGCATCCCGCAGCAAAGTGCACACGCAAACAACACATCTTCCCCCCCCCACAAATTTCCACCTGGAGCGCTTGAGCTGGACCACAGGTTCAGTCCGTTGTCACCCTCCCTTTATCACGTCAGGGCAATTTGGCAAGTTAACTTTGTTAAAGATGACGCGGAGCAGTTGCTTACAACAGCAAATTCATCAAATATTCCTCCCACTCACAGTGGAGGCACAAAAAAAAATGACCCAAATCAACACGTAGAC]
[+] EMBL CA845149 [GATAGTGCGTATTTTATTCTGATAAGATAAAGAAGTGTCTCCAAAAGAAAAGCGGGGCCGCTTGATTTTTTTAATTCATGCCGATGTGGATTTGAGAGTCAGACTGACAGGCCAACAGTCATGAATGACAATTTTAACCGAGCTCCAGGAGCTGGGAGAATCCGAAGTCCTCCTGCAGACCCTGGGTTTGTGGGCACCGCCGGGGATCCCAACACCAGCACCACTTTTTACAACCAAACGGTTTCTCCGCTGAGACAACCGCGAACATCCCCGTCTTTTACAGAGAGCCCGCACAACGACACGGCTGGTGAAGATCTAAAAAGGCAGAGCATCCCGCAGCAAAGTGCACACGCAAACAACACATCTTCCCCCCCCCACAAATTTCCACCTGGAGCGCTTGAGCTGGACCACAGGTTCAGTCCGTTGTCACCCTCCCTTTATCACGTCAGGGCAATTTGGCAAGTTAACTTTGTTAAAGATGACGCGGAGCAGTTGCTTACAACAGCAAATTCATCAAATATTCCTCCCACTCACAGTGGAGGCACAAAAAAAAATGACCCAAATCAACACGTAGAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2157#0 CCAGTATGAGAGATAGTGCGTATTTTATTCTGATAAGATAAAGAGGCGTCTCCAAAAGAA 60
consensus_2157#1 -----------GATAGTGCGTATTTTATTCTGATAAGATAAAGAAGTGTCTCCAAAAGAA 49
********************************* * *************
consensus_2157#0 AAGCGGGGCCGCTTGATTTTTTTTAATTCATGCCGATGTGGATTTGAGAGTCAGACTGAC 120
consensus_2157#1 AAGCGGGGCCGCTTGATTTTTTT-AATTCATGCCGATGTGGATTTGAGAGTCAGACTGAC 108
*********************** ************************************
consensus_2157#0 AGGCCAACAGTCATGAATGACAATTTTAACCGAGCTCCAGGAGCTGGGAGAATCCGAAGT 180
consensus_2157#1 AGGCCAACAGTCATGAATGACAATTTTAACCGAGCTCCAGGAGCTGGGAGAATCCGAAGT 168
************************************************************
consensus_2157#0 CCTCCTGCAGACCCTGGGTTTGTGGGCACCGGCGGGGATCCCAACACCAGCACCACTTTT 240
consensus_2157#1 CCTCCTGCAGACCCTGGGTTTGTGGGCACCGCCGGGGATCCCAACACCAGCACCACTTTT 228
******************************* ****************************
consensus_2157#0 TACAACCAAACGGGTTCTCCGCTGAGACAACCGCGAACATCCCCGTCTTTTACAGAGAGC 300
consensus_2157#1 TACAACCAAACGGTTTCTCCGCTGAGACAACCGCGAACATCCCCGTCTTTTACAGAGAGC 288
************* **********************************************
consensus_2157#0 CCGCACAACGACACGGCTGGTGAAGATCTAAAAAGGCAGAGCATCCCGCAGCAAAGTGCA 360
consensus_2157#1 CCGCACAACGACACGGCTGGTGAAGATCTAAAAAGGCAGAGCATCCCGCAGCAAAGTGCA 348
************************************************************
consensus_2157#0 CACGCAAACAACACATCTTCCCCCG---ATAGATTTACCCAAGAGGCGCCTGCGGTGAAC 417
consensus_2157#1 CACGCAAACAACACATCTTCCCCCCCCCACAAATTTCCACCTGGAGCGCTTGAGCTGGAC 408
************************ * * **** * * * **** ** * ** **
consensus_2157#0 TCATCAACCCTCTCAGCCAGTGCTCCAGAGTTTGTACCAGCTGGGATGATGTGTGAGAAC 477
consensus_2157#1 -CACAGGTTCAGTCCGTTGTCACCCTCCCTTTATCAC--GTCAGGGCAATTTGGCAAGTT 465
** * ** * * * ** ** * ** ** ** *
consensus_2157#0 AACAATCTTTATTTTGACGGCGAACACTTTTATGGAGAACCATGCTTGGCTGACATGG-T 536
consensus_2157#1 AACTTTGTTAAAGATGACGCGGAGCAGTTGCTTACAACAGCAAATTCATCAAATATTCCT 525
*** * ** * ***** ** ** ** * * * ** * * * ** *
consensus_2157#0 CACAGACTTTCTGG-GTCACCTGAGCACCTCACCAGGGTCCTTTGAGTCGGATATTGGGT 595
consensus_2157#1 CCCACTCACAGTGGAGGCACAAAAAAAAATGACCCAAATC----AACACGTAGAC----- 576
* ** * *** * *** * * * *** ** * ** * *
consensus_2157#0 ACATTAGCGACACCATCAATTCCTGGGGTAATACTGAAGAGACGTTGAATGAGCTTGTTG 655
consensus_2157#1 ------------------------------------------------------------
consensus_2157#0 ACCTGATCTTCACGCAGTCTACCACCATTCCAAACTTTTCTTACACGGGGGCCAGGCTTT 715
consensus_2157#1 ------------------------------------------------------------
consensus_2157#0 GTAACTACCTGTCTCATCATCTCGCTATCAGCCCACCGAGCGGCAACTTCCGTCAGCTTC 775
consensus_2157#1 ------------------------------------------------------------
consensus_2157#0 TCCTAAAAAGATGTCAAGTAAAATACCAGCAGAGGGACGCGGCTGCCAGCGGAGATGCCG 835
consensus_2157#1 ------------------------------------------------------------
consensus_2157#0 AGGCTCAGAAGAAGCTCCACTCCTTTGTGCTCTTTCTCGGAGAGCTCTACCTTAACTTAG 895
consensus_2157#1 ------------------------------------------------------------
consensus_2157#0 AGGTGAAGAGTGCAAAGGGGTCTCCAGATCGAGCTCATGTTCTGCTGTC 944
consensus_2157#1 -------------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |