These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2157#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 944 fasta sequence [CCAGTATGAGAGATAGTGCGTATTTTATTCTGATAAGATAAAGAGGCGTCTCCAAAAGAAAAGCGGGGCCGCTTGATTTTTTTTAATTCATGCCGATGTGGATTTGAGAGTCAGACTGACAGGCCAACAGTCATGAATGACAATTTTAACCGAGCTCCAGGAGCTGGGAGAATCCGAAGTCCTCCTGCAGACCCTGGGTTTGTGGGCACCGGCGGGGATCCCAACACCAGCACCACTTTTTACAACCAAACGGGTTCTCCGCTGAGACAACCGCGAACATCCCCGTCTTTTACAGAGAGCCCGCACAACGACACGGCTGGTGAAGATCTAAAAAGGCAGAGCATCCCGCAGCAAAGTGCACACGCAAACAACACATCTTCCCCCGATAGATTTACCCAAGAGGCGCCTGCGGTGAACTCATCAACCCTCTCAGCCAGTGCTCCAGAGTTTGTACCAGCTGGGATGATGTGTGAGAACAACAATCTTTATTTTGACGGCGAACACTTTTATGGAGAACCATGCTTGGCTGACATGGTCACAGACTTTCTGGGTCACCTGAGCACCTCACCAGGGTCCTTTGAGTCGGATATTGGGTACATTAGCGACACCATCAATTCCTGGGGTAATACTGAAGAGACGTTGAATGAGCTTGTTGACCTGATCTTCACGCAGTCTACCACCATTCCAAACTTTTCTTACACGGGGGCCAGGCTTTGTAACTACCTGTCTCATCATCTCGCTATCAGCCCACCGAGCGGCAACTTCCGTCAGCTTCTCCTAAAAAGATGTCAAGTAAAATACCAGCAGAGGGACGCGGCTGCCAGCGGAGATGCCGAGGCTCAGAAGAAGCTCCACTCCTTTGTGCTCTTTCTCGGAGAGCTCTACCTTAACTTAGAGGTGAAGAGTGCAAAGGGGTCTCCAGATCGAGCTCATGTTCTGCTGTC] [+] EMBL CA589755 [CCAGTATGAGAGATAGTGCGTATTTTATTCTGATAAGATAAAGAAGCGTCTCCAAAAGAAAAGCGGGGCCGCTTGATTTTTTTTAATTCATGCCGATGTGGATTTGAGAGTCAGACTGACAGGCCAACAGTCATGAATGACAATTTTAACCGAGCTCCAGGAGCTGGGAGAATCCGAAGTCCTCCTGCAGACCCTGGGTTTGTGGGCACCGGCGGGGATCCCAACACCAGCACCACTTTTTACAACCAAACGGGTTCTCCGCTGAGACAACCGCGAACATCCCCGTCTTTTACAGAGAGCCCGCACAACGACACGGCTGGTGAAGATCTAAAAAGGCAGAGCATCCCGCAGCAAAGTGCACACGCAAACAACACATCTTCCCCCGATAGATTTACCCAAGAGGCGCCTGCGGTGAACTCATCAACCCTCTCAGCCAGTGCTCCAGAGTTTGTACCAGCTGGGATGATGTGTGAGAACAACAATCTTTATTTTGACGGCGAACACTTTTATGGAGAACCATGCTTGGCTGACATGGTCACAGACTTTCTGGGTCACCTGAGCACCTCACCAGGGTCCTTTGAGTCGGATATTGCGTACATTAGCGAC ] [+] EMBL CA590861 [ TATGAGAGATAGTGCGTATTTTATTCTGATAAGATAAAGAGGTGTCTCCAAAAGAAAAGCGGGGCCGCTTGATTTTTTTTAATTCATGCCGATGTGGATTTGAGAGTCAGACTGACAGGCCAACAGTCATGAATGACAATTTTAACCGAGCTCCAGGAGCTGGGAGAATCCGAAGTCCTCCTGCAGACCCTGGGTTTGTGGGCACCGCCGGGGATCCCAACACCAGCACCACTTTTTACAACCAAACGGTTTCTCCGCTGAGACAACCGCGAACATCCCCGTCTTTTACAGAGAGCCCGCACAACGACACGGCTGGTGAAGATCTAAAAAGGCAGAGCATCCCGCAGCAAAGTGCACACGCAAACAACACATCTTCCCCCGATAGATTTACCCAAGAGGCGCCTGCGGTGAACTCATCAACCCTCTCAGCCAGTGCTCCAGAGTTTGTACCAGCTGGGATGATGTGTGAGAACAACAATCTTTATTTTGACGGCGAACACTTTTATGGAGAACCATGCTTGGCTGACATGGTCACAGACTTTCTGGGTCACCTGAGCACCTCACCAGGGTCCTTTGAGTCGGATATTGGGTACATTAGCGACACCATCAATTCCTGGGTTAATACTGAAGAGACGTTGAATGAG ] [+] EMBL BU807095 [ ACCTGAGCACCTCACCAGGGTCCTTTGAGTCGGATATTGAGCACATTAGCGACACCATCAATTCCTGGGGTAATACTGAAGAGACGTTGAATGAGCTTGTTGACCTGATCTTCACGCAGTCTACCACCATTCCAAACTTTTCTTACACGGGGGCCAGGCTTTGTAACTACCTGTCTCATCATCTCGCTATCAGCCCACCGAGCGGCAACTTCCGTCAGCTTCTCCTAAAAAGATGTCAAGTAAAATACCAGCAGAGGGACGCGGCTGCCAGCGGAGATGCCGAGGCTCAGAAGAAGCTCCACTCCTTTGTGCTCTTTCTCGGAGAGCTCTACCTTAACTTAGAGGTGAAGAGTGCAAAGGGGTCTCCAGATCGAGCTCATGTTCTGCTGTC] consensusID : consensus_2157#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 576 fasta sequence [GATAGTGCGTATTTTATTCTGATAAGATAAAGAAGTGTCTCCAAAAGAAAAGCGGGGCCGCTTGATTTTTTTAATTCATGCCGATGTGGATTTGAGAGTCAGACTGACAGGCCAACAGTCATGAATGACAATTTTAACCGAGCTCCAGGAGCTGGGAGAATCCGAAGTCCTCCTGCAGACCCTGGGTTTGTGGGCACCGCCGGGGATCCCAACACCAGCACCACTTTTTACAACCAAACGGTTTCTCCGCTGAGACAACCGCGAACATCCCCGTCTTTTACAGAGAGCCCGCACAACGACACGGCTGGTGAAGATCTAAAAAGGCAGAGCATCCCGCAGCAAAGTGCACACGCAAACAACACATCTTCCCCCCCCCACAAATTTCCACCTGGAGCGCTTGAGCTGGACCACAGGTTCAGTCCGTTGTCACCCTCCCTTTATCACGTCAGGGCAATTTGGCAAGTTAACTTTGTTAAAGATGACGCGGAGCAGTTGCTTACAACAGCAAATTCATCAAATATTCCTCCCACTCACAGTGGAGGCACAAAAAAAAATGACCCAAATCAACACGTAGAC] [+] EMBL CA845149 [GATAGTGCGTATTTTATTCTGATAAGATAAAGAAGTGTCTCCAAAAGAAAAGCGGGGCCGCTTGATTTTTTTAATTCATGCCGATGTGGATTTGAGAGTCAGACTGACAGGCCAACAGTCATGAATGACAATTTTAACCGAGCTCCAGGAGCTGGGAGAATCCGAAGTCCTCCTGCAGACCCTGGGTTTGTGGGCACCGCCGGGGATCCCAACACCAGCACCACTTTTTACAACCAAACGGTTTCTCCGCTGAGACAACCGCGAACATCCCCGTCTTTTACAGAGAGCCCGCACAACGACACGGCTGGTGAAGATCTAAAAAGGCAGAGCATCCCGCAGCAAAGTGCACACGCAAACAACACATCTTCCCCCCCCCACAAATTTCCACCTGGAGCGCTTGAGCTGGACCACAGGTTCAGTCCGTTGTCACCCTCCCTTTATCACGTCAGGGCAATTTGGCAAGTTAACTTTGTTAAAGATGACGCGGAGCAGTTGCTTACAACAGCAAATTCATCAAATATTCCTCCCACTCACAGTGGAGGCACAAAAAAAAATGACCCAAATCAACACGTAGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2157#0 CCAGTATGAGAGATAGTGCGTATTTTATTCTGATAAGATAAAGAGGCGTCTCCAAAAGAA 60 consensus_2157#1 -----------GATAGTGCGTATTTTATTCTGATAAGATAAAGAAGTGTCTCCAAAAGAA 49 ********************************* * ************* consensus_2157#0 AAGCGGGGCCGCTTGATTTTTTTTAATTCATGCCGATGTGGATTTGAGAGTCAGACTGAC 120 consensus_2157#1 AAGCGGGGCCGCTTGATTTTTTT-AATTCATGCCGATGTGGATTTGAGAGTCAGACTGAC 108 *********************** ************************************ consensus_2157#0 AGGCCAACAGTCATGAATGACAATTTTAACCGAGCTCCAGGAGCTGGGAGAATCCGAAGT 180 consensus_2157#1 AGGCCAACAGTCATGAATGACAATTTTAACCGAGCTCCAGGAGCTGGGAGAATCCGAAGT 168 ************************************************************ consensus_2157#0 CCTCCTGCAGACCCTGGGTTTGTGGGCACCGGCGGGGATCCCAACACCAGCACCACTTTT 240 consensus_2157#1 CCTCCTGCAGACCCTGGGTTTGTGGGCACCGCCGGGGATCCCAACACCAGCACCACTTTT 228 ******************************* **************************** consensus_2157#0 TACAACCAAACGGGTTCTCCGCTGAGACAACCGCGAACATCCCCGTCTTTTACAGAGAGC 300 consensus_2157#1 TACAACCAAACGGTTTCTCCGCTGAGACAACCGCGAACATCCCCGTCTTTTACAGAGAGC 288 ************* ********************************************** consensus_2157#0 CCGCACAACGACACGGCTGGTGAAGATCTAAAAAGGCAGAGCATCCCGCAGCAAAGTGCA 360 consensus_2157#1 CCGCACAACGACACGGCTGGTGAAGATCTAAAAAGGCAGAGCATCCCGCAGCAAAGTGCA 348 ************************************************************ consensus_2157#0 CACGCAAACAACACATCTTCCCCCG---ATAGATTTACCCAAGAGGCGCCTGCGGTGAAC 417 consensus_2157#1 CACGCAAACAACACATCTTCCCCCCCCCACAAATTTCCACCTGGAGCGCTTGAGCTGGAC 408 ************************ * * **** * * * **** ** * ** ** consensus_2157#0 TCATCAACCCTCTCAGCCAGTGCTCCAGAGTTTGTACCAGCTGGGATGATGTGTGAGAAC 477 consensus_2157#1 -CACAGGTTCAGTCCGTTGTCACCCTCCCTTTATCAC--GTCAGGGCAATTTGGCAAGTT 465 ** * ** * * * ** ** * ** ** ** * consensus_2157#0 AACAATCTTTATTTTGACGGCGAACACTTTTATGGAGAACCATGCTTGGCTGACATGG-T 536 consensus_2157#1 AACTTTGTTAAAGATGACGCGGAGCAGTTGCTTACAACAGCAAATTCATCAAATATTCCT 525 *** * ** * ***** ** ** ** * * * ** * * * ** * consensus_2157#0 CACAGACTTTCTGG-GTCACCTGAGCACCTCACCAGGGTCCTTTGAGTCGGATATTGGGT 595 consensus_2157#1 CCCACTCACAGTGGAGGCACAAAAAAAAATGACCCAAATC----AACACGTAGAC----- 576 * ** * *** * *** * * * *** ** * ** * * consensus_2157#0 ACATTAGCGACACCATCAATTCCTGGGGTAATACTGAAGAGACGTTGAATGAGCTTGTTG 655 consensus_2157#1 ------------------------------------------------------------ consensus_2157#0 ACCTGATCTTCACGCAGTCTACCACCATTCCAAACTTTTCTTACACGGGGGCCAGGCTTT 715 consensus_2157#1 ------------------------------------------------------------ consensus_2157#0 GTAACTACCTGTCTCATCATCTCGCTATCAGCCCACCGAGCGGCAACTTCCGTCAGCTTC 775 consensus_2157#1 ------------------------------------------------------------ consensus_2157#0 TCCTAAAAAGATGTCAAGTAAAATACCAGCAGAGGGACGCGGCTGCCAGCGGAGATGCCG 835 consensus_2157#1 ------------------------------------------------------------ consensus_2157#0 AGGCTCAGAAGAAGCTCCACTCCTTTGTGCTCTTTCTCGGAGAGCTCTACCTTAACTTAG 895 consensus_2157#1 ------------------------------------------------------------ consensus_2157#0 AGGTGAAGAGTGCAAAGGGGTCTCCAGATCGAGCTCATGTTCTGCTGTC 944 consensus_2157#1 ------------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |