These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2164#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 714 fasta sequence [GAGCCAGAACCACATCAGCTGAACCGGGGCAGGCTGGCCCTGTTCCTGCAGCAGGTGGAGAAAGAAGCTGAGGAGCGCATGAACGAGCT-GGAGGCCAAAATGGAGAACATGTTGGTGACCATAGACAAGGCGTTCAAGGTGGAGATGATGAAGATGCCCCCGTCCCTGCTCAACACCCGGATCGGGGACCTGATCAGCGAGGAGGACCTCTTCTCCAGACCTGAGGCGTCCATCACCCTGAAGAACGAGTCCGAGCTGGTGCCGCCGTCCCTCCGGAGGGTTCCCAGTCGGAGGGGCGACGCGCAGGCTTCCACTTTCTCGTCCTCCACCCCCCCCAACAGGTCGTCGGCAAAGACCTCCAAGGCAGGAAGAGCAGCGAAAACACTGGCGGCCAGCAGCAGCACCGGGAAGCTCAGCAGGAGTTTGTCAGCCACCTCCAAAAGGAGTCAGAGCCGCACGCCCAAGACCGCGGAGCCCATCAAGCCCAAACTCAGGTCGGTGGTCTCCACCGGAGATCTGCACTGCACCGTGGCGGCCTCAGCTGCTCACATCTCCATCACCACGGCGCAGGGACAGACCGTCACGTTCTCGGGGGAGACCAAGGGCGACCTGATCAACCTGGACGCGCTGGACGATGTAACCTGGCGGCAGATCAACAAGCTAACGAGTCTGATGACGTGTCTGTCGAGGAGCCACTCCCAGCGATGAGGAGTC] [+] EMBL CA846484 [GAGCCAGAACCACATCAAAAGAACCGGGGCAGGCTGGCCCTGTTCCTGCAGCAGGGGGAGAAAGAAGCTGAGGAGCGCATGAACGAGCTCTTAGGACAAAATGGAGAACATGTTGGTGACCATAGACAAGGCGTTCAAGGTGGAGATGATGAAGATGCCCCCGTCCCTGCTCAACACCCGGATCGGGGACCTGATCAGCGAGGAGGACCTCTTCTCCAGACCTGAGGCGTCCATCACCCTGAAGAACGAGTCCGAGCTGGTGCCGCCGTCCCTCCGGAGGGTTCCCAGTCGGAGGGGCGACGCGCAGGCTTCCACTTTCTCGTCCTCCACCCCCCCCAACAGGTCGTCGGCAAAGACCTCCAAGGCAGGAAGAGCAGCGAAAACACTGGCGGCCAGCAGCAGCACCGGGAAGCTCAGCAGGAGTTTGTCAGCCACCTCCAAAAGGAGTCAGAGCCGCACGCCCAAGACCGCGGAGCCCA ] [+] EMBL CA846382 [ TCAGCTGAACCGGGGCAGGCTGGCCCAGTTCCTGCAGCAGGTGGAGAAAGAAGCTGAGGAGCGCATGAACGAGCT GGAGGCCAAAATGGAGAACATGTTGGTGACCATAGACAAGGCGTTCAAGGTGGAGATGATGAAGATGCCCCCGTCCCTGCTCAACACCCGGATCGGGGACCTGATCAGCGAGGAGGACCTCTTCTCCAGACCTGAGGCGTCCATCACCCTGAAGAACGAGTCCGAGCTGGTGCCGCCGTCCCTCCGGAGGGTTCCCAGTCGGAGGGGCGACGCGCAGGCTTCCACTTTCTCGTCCTCCACCCCCCCCAACAGGTCGTCGGCAAAGACCTCCAAGGCAGGAAGAGCAGCGAAAACACTGGCGGCCAGCAGCAGCACCGGGAAGCTCAGCAGGAGTTTGTCAGCCACCTCCCAAAGGAGTCAGAGCCGCACGCCCAAGACCGCGGAGCCCATCAAGC ] [+] EMBL CA844522 [ gtAGCTGAACCGGGGCAGGCTGGCCCTGTTCCTGCAGCAGGTGGAGAAAGAAGCTGAGGAGCGCATGAACGAGCT GGAGGCCAAAATGGAGAACATGTTGGTGACCATAGACAAGGCGTTCAAGGTGGAGATGATGAAGATGCCCCCGTCCCTGCTCAACACCCGGATCGGGGACCTGATCAGCGAGGAGGACCTCTTCTCCAGACCTGAGGCGTCCATCACCCTGAAGAACGAGTCCGAGCTGGTGCCGCCGTCCCTCCGGAGGGTTCCCAGTCGGAGGGGCGACGCGCAGGCTTCCACGTCCTCGTCCTCCACCCCCCCCAACAGGTCGTCGGCAAAGACCTCCAAGGCAGGAAGAGCAGCGAAAACACTGGCGGCCAGCAGCAGCACCGGGAAGCT CAGGAGTTTGTCAGCCACCTCCAAAAGGAGTCAGAGCCGCACGCCCAAGACCGCGGAGCCCATCAAGCCCAAACTCAGGTCGGTGGTCTCCACCGGAGATCTGCACTGCACCGTGGCGGCCTCAGCTGCTCACATCTCCATCACCACGGCGCAGGGACAGACCGTCACGTTCTCGGGGGAGACCAAGGGCGACCTGATCAACCTGGACGCGCTGGACGATGTAACCTGGCGGCAGATCAACAAGCTAACGAGTCTGATGACGTGTCTGTCGAGGAGCCACTCCCAGCGATGAGGAGTC] consensusID : consensus_2164#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 382 fasta sequence [CAAGAGCAGCTGAACCGGGGCAGGCTGGCCCTGTTCCTGCAGCAGGTGGAGAAAGAAGCTGAGGAGCGCATGAACGAGCTGGAGGCCAAAATGGAGAACATGTTGGTGACCATAGACAAGGCGTTCAAGGTGGAGATGATGAAGATGCCCCCGTCCCTGCTCAACACCCGGATCGGGGACCTGATCAGCGACCTGAGGCGTCCATCACCCTGAAGAACGAGTCCGAGCTGGTGCCGCCGTCCCTCCGGAGGGTTCCCAGTCGGAGGGGCGACGCGCAGGCTTCCACGTCCTCGTCCTCCACCCCCCCCAACAGGTCGTCGGCAAAGACCTCCATGGCAGGAAGAGCAGCGAGAACACTGGCGGGCAGCAACAGCACCGGGAA] [+] EMBL FR0057490 [CAAGAGCAGCTGAACCGGGGCAGGCTGGCCCTGTTCCTGCAGCAGGTGGAGAAAGAAGCTGAGGAGCGCATGAACGAGCTGGAGGCCAAAATGGAGAACATGTTGGTGACCATAGACAAGGCGTTCAAGGTGGAGATGATGAAGATGCCCCCGTCCCTGCTCAACACCCGGATCGGGGACCTGATCAGCGACCTGAGGCGTCCATCACCCTGAAGAACGAGTCCGAGCTGGTGCCGCCGTCCCTCCGGAGGGTTCCCAGTCGGAGGGGCGACGCGCAGGCTTCCACGTCCTCGTCCTCCACCCCCCCCAACAGGTCGTCGGCAAAGACCTCCATGGCAGGAAGAGCAGCGAGAACACTGGCGGGCAGCAACAGCACCGGGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2164#0 GAGCCAGAACCACATCAGCTGAACCGGGGCAGGCTGGCCCTGTTCCTGCAGCAGGTGGAG 60 consensus_2164#1 ---------CAAGAGCAGCTGAACCGGGGCAGGCTGGCCCTGTTCCTGCAGCAGGTGGAG 51 * * * ********************************************* consensus_2164#0 AAAGAAGCTGAGGAGCGCATGAACGAGCTGGAGGCCAAAATGGAGAACATGTTGGTGACC 120 consensus_2164#1 AAAGAAGCTGAGGAGCGCATGAACGAGCTGGAGGCCAAAATGGAGAACATGTTGGTGACC 111 ************************************************************ consensus_2164#0 ATAGACAAGGCGTTCAAGGTGGAGATGATGAAGATGCCCCCGTCCCTGCTCAACACCCGG 180 consensus_2164#1 ATAGACAAGGCGTTCAAGGTGGAGATGATGAAGATGCCCCCGTCCCTGCTCAACACCCGG 171 ************************************************************ consensus_2164#0 ATCGGGGACCTGATCAGCGAGGAGGACCTCTTCTCCAGACCTGAGGCGTCCATCACCCTG 240 consensus_2164#1 ATCGGGGACCTGATCAGCGA-------------------CCTGAGGCGTCCATCACCCTG 212 ******************** ********************* consensus_2164#0 AAGAACGAGTCCGAGCTGGTGCCGCCGTCCCTCCGGAGGGTTCCCAGTCGGAGGGGCGAC 300 consensus_2164#1 AAGAACGAGTCCGAGCTGGTGCCGCCGTCCCTCCGGAGGGTTCCCAGTCGGAGGGGCGAC 272 ************************************************************ consensus_2164#0 GCGCAGGCTTCCACTTTCTCGTCCTCCACCCCCCCCAACAGGTCGTCGGCAAAGACCTCC 360 consensus_2164#1 GCGCAGGCTTCCACGTCCTCGTCCTCCACCCCCCCCAACAGGTCGTCGGCAAAGACCTCC 332 ************** * ******************************************* consensus_2164#0 AAGGCAGGAAGAGCAGCGAAAACACTGGCGGCCAGCAGCAGCACCGGGAAGCTCAGCAGG 420 consensus_2164#1 ATGGCAGGAAGAGCAGCGAGAACACTGGCGGGCAGCAACAGCACCGGGAA---------- 382 * ***************** *********** ***** ************ consensus_2164#0 AGTTTGTCAGCCACCTCCAAAAGGAGTCAGAGCCGCACGCCCAAGACCGCGGAGCCCATC 480 consensus_2164#1 ------------------------------------------------------------ consensus_2164#0 AAGCCCAAACTCAGGTCGGTGGTCTCCACCGGAGATCTGCACTGCACCGTGGCGGCCTCA 540 consensus_2164#1 ------------------------------------------------------------ consensus_2164#0 GCTGCTCACATCTCCATCACCACGGCGCAGGGACAGACCGTCACGTTCTCGGGGGAGACC 600 consensus_2164#1 ------------------------------------------------------------ consensus_2164#0 AAGGGCGACCTGATCAACCTGGACGCGCTGGACGATGTAACCTGGCGGCAGATCAACAAG 660 consensus_2164#1 ------------------------------------------------------------ consensus_2164#0 CTAACGAGTCTGATGACGTGTCTGTCGAGGAGCCACTCCCAGCGATGAGGAGTC 714 consensus_2164#1 ------------------------------------------------------ |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |