These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2170#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 590 fasta sequence [GGGGCTTTTTGCTGCGGCCACCTGGGGAAACGCCATGTAAGATCTCAGGCTTTTCGAGACAAAATCCATGCAAACTCTGACAGCCGC-TCTAAATTGTAAGGAAAATTATTAGTTCTGGATGAAATCTGTACGTTGGTGTGTGACTTTGACAAAGCCAACAAGTTTTCGTGCGTCACGGAGCTTTATGGACGCGCTCACAGGTCCCCAAACCAACTCCAGGAGAGGAAATCCCCGCACCCTGCGCACCGTGGATAGATCAAATCGGGTTTGATGTCAGGAGAAGGTGAAGTCAGGCTGACGGAGGTTTTCTTTTTAGCCAGGTAACAGGACTTAGCTTTAGTTTCCGAACCGCGCGTCGCGTCGCTGCGCAGCGCTGCGTCATGAGCGGAGGTCGGTTCGAGTTCGACGACGGTGGAGCTTATTGCGGAGGCTGGGAGGGGGGCAAAGCTCACGGCCATGGCATCTGCACTGGGCCCAAAGGCCAGGGAGAGTTCTCCGGCTCCTGGAACTACGGTTTCGAAGTGGTGGGAGTCTACACCTGGCCCAGCGGGAACACCTTCGAGGGCTACTGGTCGCAGGGGAAGCGTCAT] [+] EMBL BU804860 [GGGGCTTTTTGCTGCGGCCACCTGGCGAAACGCCATGTAAGATCTCAGGCTTTTCGAGACAAAATCCATGCAAACTCTGACAGCCGC TCTAAATTGTAAGGAAAATTATTAGTTCTGGATGAAATCTGTACGTTGGTGTGTGACTTTGACAAAGCCAACAAGTTTTCGTGCGTCACGGAGCTTTATGGACGCGCTCACAGGTCCCCAAACCAACTCCAGGAGAGGAAATCCCCGCACCCTGCGCACCGTGGATAGATCAAATCGGGTTTGATGTCAGGAGAAGGTGAAGTCAGGCTGACGGAGGTTTTCTTTTTAGCCAGGTAACAGGACTTAGCTTTAGTTTCCGAACCGCGCGTCGCGTCGCTGCGCAGCGCTGCGTCATGAGCGGAGGTCGGTTCGAGTTCGACGACGGTGGAGCTTATTGCGGAGGCTGGGAGGGGGGCAAAGCTCACGGCCATGGCATCTGCACTGGGCCCAAAGGCCAGGGAGAGTTCTCCGGCTCCTGGAACTACGGTTTCGAAGTGGTGGGAGTCTACACCTGGCCCAGCGGGAACACCTTCGAGGGCTACTGGTCGCAGGGGAAGCGTCAT] [+] EMBL BU805571 [GGGGCTTTTTGCTGCGGCCACCTGGGCAAACGCCATGTAAGATCTCAGGCTTTTCGAGACAAAATCCATGCAAACTCTGACAGCCGC TCTAAATTGTAAGGAAAATTATTAGTTCTGGATGAAATCTGTACGTTGGTGTGTGACTTTGACAAAGCCAACAAGTTTTCGTGCGTCACGGAGCTTTATGGACGCGCTCACAGGTCCCCAAACCAACTCCAGGAGAGGAAATCCCCGCACCCTGCGCACCGTGGATAGATCAAATCGGGTTTGATGTCAGGAGAAGGTGAAGTCAGGCTGACGGAGGTTTTCTTTTTAGCCAGGTAACAGGACTTAGCTTTAGTTTCCGAACCGCGCGTCGCGTCGCTGCGCAGCGCTGCGTCATGAGCGGAGGTCGGTTCGAGTTCGACGACGGTGGAGCTTATTGCGGAGGCTGGGAGGGGGGCAAAGCTCACGGCCATGGCATCTGCACTGGG ] [+] EMBL FR0063867 [ ACAAAATCCATGCAAACTCTGACAGCCGCGTCTAAATTGTAAGGAAAATTATTAGCTCTGGATGAAATCTGTACGTTCGTGTGTGACTTTGACAAAGCCAACAAGTTTTCGTGCGTCACGGAGCTTTATGGACGCGCTCACAGGTCCCCAAACCAACTCCAGGAGAGGAAATCCCCGCACCCTGCCGACCGTGGATAGATCAAATCGGGTTTGATGTCAGGAGAAGGTGAAGTCAGGCTGACGGAGGTTTTCTTTTTAGCCAGGTAACAGGACTTAGCTTTAGTTTCCGAACCG ] consensusID : consensus_2170#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 253 fasta sequence [ACAAAATCCATTCAAACTGGGACAGCCGCTCTAAATTGTAAGNAAAACCATTAGTTCTGGATGAAATCTGTACGTGNNNTNTNACCTTTGACAAAGCCAACAAGTTTTCGTGCGTCACGGAGCTTTATGGACGCGCTCACAGTTCCCCAAACCAACTCCAGGAGAGGAAATCCCCGCACCCTGCGCACCGGGGATAGATCAAATCGGTTTGAATGCAGGAGACGAGAAGCAGCTGACGAGGTTCTTTTAGCAG] [+] EMBL FR0063815 [ACAAAATCCATTCAAACTGGGACAGCCGCTCTAAATTGTAAGNAAAACCATTAGTTCTGGATGAAATCTGTACGTGNNNTNTNACCTTTGACAAAGCCAACAAGTTTTCGTGCGTCACGGAGCTTTATGGACGCGCTCACAGTTCCCCAAACCAACTCCAGGAGAGGAAATCCCCGCACCCTGCGCACCGGGGATAGATCAAATCGGTTTGAATGCAGGAGACGAGAAGCAGCTGACGAGGTTCTTTTAGCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2170#0 GGGGCTTTTTGCTGCGGCCACCTGGGGAAACGCCATGTAAGATCTCAGGCTTTTCGAGAC 60 consensus_2170#1 ----------------------------------------------------------AC 2 ** consensus_2170#0 AAAATCCATGCAAACTCTGACAGCCGCTCTAAATTGTAAGGAAAATTATTAGTTCTGGAT 120 consensus_2170#1 AAAATCCATTCAAACTGGGACAGCCGCTCTAAATTGTAAGNAAAACCATTAGTTCTGGAT 62 ********* ****** ********************** **** ************* consensus_2170#0 GAAATCTGTACGTTGGTGTGTGACTTTGACAAAGCCAACAAGTTTTCGTGCGTCACGGAG 180 consensus_2170#1 GAAATCTGTACGTGNNNTNTNACCTTTGACAAAGCCAACAAGTTTTCGTGCGTCACGGAG 122 ************* ************************************* consensus_2170#0 CTTTATGGACGCGCTCACAGGTCCCCAAACCAACTCCAGGAGAGGAAATCCCCGCACCCT 240 consensus_2170#1 CTTTATGGACGCGCTCACAGTTCCCCAAACCAACTCCAGGAGAGGAAATCCCCGCACCCT 182 ******************** *************************************** consensus_2170#0 GCGCACCGTGGATAGATCAAATCGGGTTTGATGTCAGGAGAAGGTGAAGTCAGGCTGACG 300 consensus_2170#1 GCGCACCGGGGATAGATCAAATCGGTTTGAATG-CAGGAGACGA-GAAGC--AGCTGACG 238 ******** **************** ** *** ******* * **** ******* consensus_2170#0 GAGGTTTTCTTTTTAGCCAGGTAACAGGACTTAGCTTTAGTTTCCGAACCGCGCGTCGCG 360 consensus_2170#1 -AGGTTCTTTTAGCAG-------------------------------------------- 253 ***** * ** ** consensus_2170#0 TCGCTGCGCAGCGCTGCGTCATGAGCGGAGGTCGGTTCGAGTTCGACGACGGTGGAGCTT 420 consensus_2170#1 ------------------------------------------------------------ consensus_2170#0 ATTGCGGAGGCTGGGAGGGGGGCAAAGCTCACGGCCATGGCATCTGCACTGGGCCCAAAG 480 consensus_2170#1 ------------------------------------------------------------ consensus_2170#0 GCCAGGGAGAGTTCTCCGGCTCCTGGAACTACGGTTTCGAAGTGGTGGGAGTCTACACCT 540 consensus_2170#1 ------------------------------------------------------------ consensus_2170#0 GGCCCAGCGGGAACACCTTCGAGGGCTACTGGTCGCAGGGGAAGCGTCAT 590 consensus_2170#1 -------------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |