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Takifugu rubripes
cluster # 2174 cluster # 2174       Sequences # 4       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2174#0 length = 600 sequences # 3  
 consensus_2174#1 length = 344 sequences # 1  
consensusID : consensus_2174#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 600
fasta sequence 
                              [AAAGGCGACCTGGCAGCGCTTTCTACACTCCCTCCGCGTTTTCTGGGTAGTCACGGGATTTCAATGTTCAGCCTGCTCTTCGGTTTCAGTGTTGACTTGAGCCACACCTTTATGGCGTGTGTGAGTGGTGAATTCTGCCAGGCACAGCACCTCACCTCAGCGGAGAAGTGAACCGGCCGCTCCCAGAGGGACTACGCTACCCAGAAACCTCCCTGATTCCAAGCAAACAAGAAACTGCTGGTTCTCCGAAGCCCCCACCCCTGGGTTACTGCGGAGTCCTTGGCCTGCCCTGCCCCACAAACCTTTTCTGCTTTCTCCTCGAACTGCCAATCAAAAACAACTCTCCTGAATGGGGTAAACTGATTGGATGACTCCTGGATAGGCTATCCATCCTTTTCTTTTTTTCTTTTTTCCATTTTTGTGTTGTTTTTTTCTCCACATCCCGGAGTACCTTGGACTAGCTCATCCTTTGATTCGTTTCTGTGTAACTCATCCCATAATTGAACACCTTCTGACCCATCCTGTCCCCACGTGTTGCTGTTTTTGTTTTTTTTTTTATTTATTGCATCTGTTCCTCAAAACCACAAATCTACCAGTTCT]

[+] EMBL BU808576             [AAAGGCGACCTGGCAGCGCTTTCTACACTCCCTCCGCGTTTTCTGGGTAGTCACGGGATTTCAATGTTCAGCCTGCTCTTCGGTTTCAGTGTTGACTTGAGCCACACCTTTATGGCGTGTGTGAGTGGTGAATTCTGCCAGGCACAGCACCTCACCTCAGCGGAGAAGTGAACCGGCCGCTCCCAGAGGGACTACGCTACCCAGAAACCTCCCTGATTCCAAGCAAACAAGAAACTGCTGGTTCTCCGAAGCCCCCACCCCTGGGTTACTGCGTAGTCCTTGGCCTGCCCTGCCCCACAAACCTTTTCTGCTTTCTCCTCGAACTGCCAATCAAAAACAACTCTCCTGAATGGGGTAAACTGATTGGATGACTCCTGGATAGTCTTTCCATCCTTTTCTTTTTTTCTTTTTTCCATTTTTGTGTTGTTTTTTTCTCCACATCCCGGAGTACCTTGGACTAGCTCATCCTTTGATTCGTTTCTGTGTAACTCATCCCATAATTGAACACCTTCTGACCCATCCTGTCCCCACGTGTTGCTGTTTTTGTTTTTTTTTTTATTTATTGCATCTGTTCCTCAAAACCACAAATCTACCAGTTCT]
[+] EMBL FR0058536            [                                                                               TCGGTTTCAGTGTTGACTTGAGCCACACCTTTATGGCGTGTGTGAGTGGTGAATTCTGCCAGGCACAGCACCTCACCTCAGCGGAGAAGTGAACCGGCCGCTCCCAGAGGGACTACGCTACCCAGAAACCTCCCTGATTCCAAGCAAACAAGAAACTGCTGGTTCTCCGAAGCCCCCACCCCTGGGTTACTGCGGAGTCCTTGGCCTGCCCTGCCCCACAAACCTTTTCTGCTTTCTCCTCGAACTGCC                                                                                                                                                                                                                                                                                ]
[+] EMBL FR0061981            [                                                                                                                                          CAAGCACAACACCTCACCTCAGCGGAGAAGGGAACCGGCCGCTCCCAGAGGGACTACGCTATCCAGAAACCTCCCTGATTCCAAGCAAACAAGAAACTGCTGGTTCTCCGAAGCCCCCACCCCTGGGTTACTGCAGAGTCCTTGGCCTGCCCTGCCCCACAAACCTTTTCTGCTTTCTCCTCGAACTGCCAATCAAAAACAACTCTCCTGAATGGGGTAAACTGATTGGATGACTCCTGGATAGGCTATCCATCC                                                                                                                                                                                                               ]




>consensus_2174#0
AAAGGCGACCTGGCAGCGCTTTCTACACTCCCTCCGCGTTTTCTGGGTAGTCACGGGATT
TCAATGTTCAGCCTGCTCTTCGGTTTCAGTGTTGACTTGAGCCACACCTTTATGGCGTGT
GTGAGTGGTGAATTCTGCCAGGCACAGCACCTCACCTCAGCGGAGAAGTGAACCGGCCGC
TCCCAGAGGGACTACGCTACCCAGAAACCTCCCTGATTCCAAGCAAACAAGAAACTGCTG
GTTCTCCGAAGCCCCCACCCCTGGGTTACTGCGGAGTCCTTGGCCTGCCCTGCCCCACAA
ACCTTTTCTGCTTTCTCCTCGAACTGCCAATCAAAAACAACTCTCCTGAATGGGGTAAAC
TGATTGGATGACTCCTGGATAGGCTATCCATCCTTTTCTTTTTTTCTTTTTTCCATTTTT
GTGTTGTTTTTTTCTCCACATCCCGGAGTACCTTGGACTAGCTCATCCTTTGATTCGTTT
CTGTGTAACTCATCCCATAATTGAACACCTTCTGACCCATCCTGTCCCCACGTGTTGCTG
TTTTTGTTTTTTTTTTTATTTATTGCATCTGTTCCTCAAAACCACAAATCTACCAGTTCT

consensusID : consensus_2174#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 344
fasta sequence 
                              [AGTGTTGACGTGAGCCACACCTTTATGGCGTGTGTGAGTGGTGAATTCTGCCAGGCACAGCACCTCACCTCAGCGGAGAAGTGAACCGGCCGCTCCCAGAGGGACTACGCTACCCAGAAACCTCCCTGATTCCAAGCAAACAAGAAACTGCTGGTTCTCCGAAGCCCCCACCCCTGGGTTACTGCGTAGTCCTTGGCCTGCCCTGCCCCACAAACCTTTTCTGCTTTCTCCTCGAACTGCCAATCAAAAACAACTCTCCTGAATGGGCCGTCTCGCCAACATGAATCGCCCCGCCGAGTAGAGATCACCTACGGTTGCATGAAGGTCCTCATCACCCACAACCC]

[+] EMBL FR0059831            [AGTGTTGACGTGAGCCACACCTTTATGGCGTGTGTGAGTGGTGAATTCTGCCAGGCACAGCACCTCACCTCAGCGGAGAAGTGAACCGGCCGCTCCCAGAGGGACTACGCTACCCAGAAACCTCCCTGATTCCAAGCAAACAAGAAACTGCTGGTTCTCCGAAGCCCCCACCCCTGGGTTACTGCGTAGTCCTTGGCCTGCCCTGCCCCACAAACCTTTTCTGCTTTCTCCTCGAACTGCCAATCAAAAACAACTCTCCTGAATGGGCCGTCTCGCCAACATGAATCGCCCCGCCGAGTAGAGATCACCTACGGTTGCATGAAGGTCCTCATCACCCACAACCC]




>consensus_2174#1
AGTGTTGACGTGAGCCACACCTTTATGGCGTGTGTGAGTGGTGAATTCTGCCAGGCACAG
CACCTCACCTCAGCGGAGAAGTGAACCGGCCGCTCCCAGAGGGACTACGCTACCCAGAAA
CCTCCCTGATTCCAAGCAAACAAGAAACTGCTGGTTCTCCGAAGCCCCCACCCCTGGGTT
ACTGCGTAGTCCTTGGCCTGCCCTGCCCCACAAACCTTTTCTGCTTTCTCCTCGAACTGC
CAATCAAAAACAACTCTCCTGAATGGGCCGTCTCGCCAACATGAATCGCCCCGCCGAGTA
GAGATCACCTACGGTTGCATGAAGGTCCTCATCACCCACAACCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2174#0      AAAGGCGACCTGGCAGCGCTTTCTACACTCCCTCCGCGTTTTCTGGGTAGTCACGGGATT 60
consensus_2174#1      ------------------------------------------------------------
                                                                                  

consensus_2174#0      TCAATGTTCAGCCTGCTCTTCGGTTTCAGTGTTGACTTGAGCCACACCTTTATGGCGTGT 120
consensus_2174#1      ---------------------------AGTGTTGACGTGAGCCACACCTTTATGGCGTGT 33
                                                 ********* ***********************

consensus_2174#0      GTGAGTGGTGAATTCTGCCAGGCACAGCACCTCACCTCAGCGGAGAAGTGAACCGGCCGC 180
consensus_2174#1      GTGAGTGGTGAATTCTGCCAGGCACAGCACCTCACCTCAGCGGAGAAGTGAACCGGCCGC 93
                      ************************************************************

consensus_2174#0      TCCCAGAGGGACTACGCTACCCAGAAACCTCCCTGATTCCAAGCAAACAAGAAACTGCTG 240
consensus_2174#1      TCCCAGAGGGACTACGCTACCCAGAAACCTCCCTGATTCCAAGCAAACAAGAAACTGCTG 153
                      ************************************************************

consensus_2174#0      GTTCTCCGAAGCCCCCACCCCTGGGTTACTGCGGAGTCCTTGGCCTGCCCTGCCCCACAA 300
consensus_2174#1      GTTCTCCGAAGCCCCCACCCCTGGGTTACTGCGTAGTCCTTGGCCTGCCCTGCCCCACAA 213
                      ********************************* **************************

consensus_2174#0      ACCTTTTCTGCTTTCTCCTCGAACTGCCAATCAAAAACAACTCTCCTGAATGGGGTAAAC 360
consensus_2174#1      ACCTTTTCTGCTTTCTCCTCGAACTGCCAATCAAAAACAACTCTCCTGAATGGG-----C 268
                      ******************************************************     *

consensus_2174#0      TGATTGGATGACTCCTGGATAGGCTATCCATCCTTTTCTTTTTTTCTTTTTTCCATTTTT 420
consensus_2174#1      CGTCTCGCCAAC------ATGAATCGCCCCGCCGAGTAGAGATCACCTACGGTTGCATGA 322
                       *  * *   **      **       **  **   *     *  * *         *  

consensus_2174#0      GTGTTGTTTTTTTCTCCACATCCCGGAGTACCTTGGACTAGCTCATCCTTTGATTCGTTT 480
consensus_2174#1      AGGT--CCTCATCACCCACAACCC------------------------------------ 344
                        **    *  *   ***** ***                                    

consensus_2174#0      CTGTGTAACTCATCCCATAATTGAACACCTTCTGACCCATCCTGTCCCCACGTGTTGCTG 540
consensus_2174#1      ------------------------------------------------------------
                                                                                  

consensus_2174#0      TTTTTGTTTTTTTTTTTATTTATTGCATCTGTTCCTCAAAACCACAAATCTACCAGTTCT 600
consensus_2174#1      ------------------------------------------------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)