These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2174#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 600 fasta sequence [AAAGGCGACCTGGCAGCGCTTTCTACACTCCCTCCGCGTTTTCTGGGTAGTCACGGGATTTCAATGTTCAGCCTGCTCTTCGGTTTCAGTGTTGACTTGAGCCACACCTTTATGGCGTGTGTGAGTGGTGAATTCTGCCAGGCACAGCACCTCACCTCAGCGGAGAAGTGAACCGGCCGCTCCCAGAGGGACTACGCTACCCAGAAACCTCCCTGATTCCAAGCAAACAAGAAACTGCTGGTTCTCCGAAGCCCCCACCCCTGGGTTACTGCGGAGTCCTTGGCCTGCCCTGCCCCACAAACCTTTTCTGCTTTCTCCTCGAACTGCCAATCAAAAACAACTCTCCTGAATGGGGTAAACTGATTGGATGACTCCTGGATAGGCTATCCATCCTTTTCTTTTTTTCTTTTTTCCATTTTTGTGTTGTTTTTTTCTCCACATCCCGGAGTACCTTGGACTAGCTCATCCTTTGATTCGTTTCTGTGTAACTCATCCCATAATTGAACACCTTCTGACCCATCCTGTCCCCACGTGTTGCTGTTTTTGTTTTTTTTTTTATTTATTGCATCTGTTCCTCAAAACCACAAATCTACCAGTTCT] [+] EMBL BU808576 [AAAGGCGACCTGGCAGCGCTTTCTACACTCCCTCCGCGTTTTCTGGGTAGTCACGGGATTTCAATGTTCAGCCTGCTCTTCGGTTTCAGTGTTGACTTGAGCCACACCTTTATGGCGTGTGTGAGTGGTGAATTCTGCCAGGCACAGCACCTCACCTCAGCGGAGAAGTGAACCGGCCGCTCCCAGAGGGACTACGCTACCCAGAAACCTCCCTGATTCCAAGCAAACAAGAAACTGCTGGTTCTCCGAAGCCCCCACCCCTGGGTTACTGCGTAGTCCTTGGCCTGCCCTGCCCCACAAACCTTTTCTGCTTTCTCCTCGAACTGCCAATCAAAAACAACTCTCCTGAATGGGGTAAACTGATTGGATGACTCCTGGATAGTCTTTCCATCCTTTTCTTTTTTTCTTTTTTCCATTTTTGTGTTGTTTTTTTCTCCACATCCCGGAGTACCTTGGACTAGCTCATCCTTTGATTCGTTTCTGTGTAACTCATCCCATAATTGAACACCTTCTGACCCATCCTGTCCCCACGTGTTGCTGTTTTTGTTTTTTTTTTTATTTATTGCATCTGTTCCTCAAAACCACAAATCTACCAGTTCT] [+] EMBL FR0058536 [ TCGGTTTCAGTGTTGACTTGAGCCACACCTTTATGGCGTGTGTGAGTGGTGAATTCTGCCAGGCACAGCACCTCACCTCAGCGGAGAAGTGAACCGGCCGCTCCCAGAGGGACTACGCTACCCAGAAACCTCCCTGATTCCAAGCAAACAAGAAACTGCTGGTTCTCCGAAGCCCCCACCCCTGGGTTACTGCGGAGTCCTTGGCCTGCCCTGCCCCACAAACCTTTTCTGCTTTCTCCTCGAACTGCC ] [+] EMBL FR0061981 [ CAAGCACAACACCTCACCTCAGCGGAGAAGGGAACCGGCCGCTCCCAGAGGGACTACGCTATCCAGAAACCTCCCTGATTCCAAGCAAACAAGAAACTGCTGGTTCTCCGAAGCCCCCACCCCTGGGTTACTGCAGAGTCCTTGGCCTGCCCTGCCCCACAAACCTTTTCTGCTTTCTCCTCGAACTGCCAATCAAAAACAACTCTCCTGAATGGGGTAAACTGATTGGATGACTCCTGGATAGGCTATCCATCC ] consensusID : consensus_2174#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 344 fasta sequence [AGTGTTGACGTGAGCCACACCTTTATGGCGTGTGTGAGTGGTGAATTCTGCCAGGCACAGCACCTCACCTCAGCGGAGAAGTGAACCGGCCGCTCCCAGAGGGACTACGCTACCCAGAAACCTCCCTGATTCCAAGCAAACAAGAAACTGCTGGTTCTCCGAAGCCCCCACCCCTGGGTTACTGCGTAGTCCTTGGCCTGCCCTGCCCCACAAACCTTTTCTGCTTTCTCCTCGAACTGCCAATCAAAAACAACTCTCCTGAATGGGCCGTCTCGCCAACATGAATCGCCCCGCCGAGTAGAGATCACCTACGGTTGCATGAAGGTCCTCATCACCCACAACCC] [+] EMBL FR0059831 [AGTGTTGACGTGAGCCACACCTTTATGGCGTGTGTGAGTGGTGAATTCTGCCAGGCACAGCACCTCACCTCAGCGGAGAAGTGAACCGGCCGCTCCCAGAGGGACTACGCTACCCAGAAACCTCCCTGATTCCAAGCAAACAAGAAACTGCTGGTTCTCCGAAGCCCCCACCCCTGGGTTACTGCGTAGTCCTTGGCCTGCCCTGCCCCACAAACCTTTTCTGCTTTCTCCTCGAACTGCCAATCAAAAACAACTCTCCTGAATGGGCCGTCTCGCCAACATGAATCGCCCCGCCGAGTAGAGATCACCTACGGTTGCATGAAGGTCCTCATCACCCACAACCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2174#0 AAAGGCGACCTGGCAGCGCTTTCTACACTCCCTCCGCGTTTTCTGGGTAGTCACGGGATT 60 consensus_2174#1 ------------------------------------------------------------ consensus_2174#0 TCAATGTTCAGCCTGCTCTTCGGTTTCAGTGTTGACTTGAGCCACACCTTTATGGCGTGT 120 consensus_2174#1 ---------------------------AGTGTTGACGTGAGCCACACCTTTATGGCGTGT 33 ********* *********************** consensus_2174#0 GTGAGTGGTGAATTCTGCCAGGCACAGCACCTCACCTCAGCGGAGAAGTGAACCGGCCGC 180 consensus_2174#1 GTGAGTGGTGAATTCTGCCAGGCACAGCACCTCACCTCAGCGGAGAAGTGAACCGGCCGC 93 ************************************************************ consensus_2174#0 TCCCAGAGGGACTACGCTACCCAGAAACCTCCCTGATTCCAAGCAAACAAGAAACTGCTG 240 consensus_2174#1 TCCCAGAGGGACTACGCTACCCAGAAACCTCCCTGATTCCAAGCAAACAAGAAACTGCTG 153 ************************************************************ consensus_2174#0 GTTCTCCGAAGCCCCCACCCCTGGGTTACTGCGGAGTCCTTGGCCTGCCCTGCCCCACAA 300 consensus_2174#1 GTTCTCCGAAGCCCCCACCCCTGGGTTACTGCGTAGTCCTTGGCCTGCCCTGCCCCACAA 213 ********************************* ************************** consensus_2174#0 ACCTTTTCTGCTTTCTCCTCGAACTGCCAATCAAAAACAACTCTCCTGAATGGGGTAAAC 360 consensus_2174#1 ACCTTTTCTGCTTTCTCCTCGAACTGCCAATCAAAAACAACTCTCCTGAATGGG-----C 268 ****************************************************** * consensus_2174#0 TGATTGGATGACTCCTGGATAGGCTATCCATCCTTTTCTTTTTTTCTTTTTTCCATTTTT 420 consensus_2174#1 CGTCTCGCCAAC------ATGAATCGCCCCGCCGAGTAGAGATCACCTACGGTTGCATGA 322 * * * ** ** ** ** * * * * * consensus_2174#0 GTGTTGTTTTTTTCTCCACATCCCGGAGTACCTTGGACTAGCTCATCCTTTGATTCGTTT 480 consensus_2174#1 AGGT--CCTCATCACCCACAACCC------------------------------------ 344 ** * * ***** *** consensus_2174#0 CTGTGTAACTCATCCCATAATTGAACACCTTCTGACCCATCCTGTCCCCACGTGTTGCTG 540 consensus_2174#1 ------------------------------------------------------------ consensus_2174#0 TTTTTGTTTTTTTTTTTATTTATTGCATCTGTTCCTCAAAACCACAAATCTACCAGTTCT 600 consensus_2174#1 ------------------------------------------------------------ |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |