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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2193#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 698 fasta sequence
[GTCCCTAGCTAGTCGGGCGAGGTCCGGGCCAACCAGTCGCATTTTCAGTATTCGGCTAACTAATGTTTGAATTATAGTTGACATGGATTTCGACGCTTTATTTAACGAAAAGACATTCCAATTTTCGGACTTCCAGGAGTTCACGGGAGGCCTGCATCTCTCCCTGTGCCATGATGCTGGCTCTGGTTTACATCGAAAGGCTCCGACACAGAAACCCTGAATACCTTCAAAAGATCTCCTCCTCAGACCTTTTCCTGATCTCCATGATGGTTGCTAGCAAGTACTTGTATGATGAAGGGGAGGAAGAGGAGGTTTTCAATGACGAATGGGGAGCGGCCGGAAAGCTGGATGTCAAAACTGTCAATAACCTGGAGATGAGCTTCTTGAACGCCATTGAATGGAGCCTCTTCACAGACCCTAATGACCTGCTTGATTTACTAAGTCAACTAGAGGCCAGCATTGCAGAGCGTCAGGGGATGAAACGGGGCTGGTTCACATACACGGATCTCTGCGTACTGCTGGAGCAGTCGGCATGGAGTCAAGCTCTTGCAGCCATCTACCAGCACTTTACTAAGATTTCTTGCATGCTCGGACTCCTCTACCTGACCAGCGTGGCGGGCCTCATCGCCACCTGTGCTGTGCTGCAGCAGCTCAGTATTTCCAGATACAGCCAGACCGAGCTGTCACCTCCAGCTGAC]
[+] EMBL CA845917 [GTCCCTAGCTAGTCGGGCGAGGTCCGGGCCAACCAGTCGCATTTTCAGTATTCGGCTAACTAATGTTTGAATTATAGTTGACATGGATTTCGACGCTTTATTTAACGAAAAGACATTCCAATTTTCGGACTTCCAGGAGTTCACGGGAGGCCTGCATCTCTCCCTGTGCCATGATGCTGGCTCTGGTTTACATCGAAAGGCTCCGACACAGAAACCCTGAATACCTTCAAAAGATCTCCTCCTCAGACCTTTTCCTGATCTCCATGATGGTTGCTAGCAAGTACTTGTATGATGAAGGGGAGGAAGAGGAGGTTTTCAATGACGAATGGGGAGCGGCCGGAAAGCTGGATGTCAAAACTGTCAATAACCTGGAGATGAGCTTCTTGAACGCCATTGAATGGAGCCTCTTCACAGACCCTAATGACCTGCTTGATTTACTAAGTCAACTAGAGGCCAGCATTGCAGAGCGTCAGGGGATGAAACGGGGCTGGTTCACATACACGGATCTCTGCGTACTGCTGGAGCAGTCGGCATGGAGTCAAGCTCTTGCAGCCATCTACCAGCACTTTACTAAGATTTCTTGCATGCTCGGACTCCTCTACCTGACCAGCGTGGCGGGCCTCATCGCCACCTGTGCTGTGCTGCAGCAGCTCAGTATTTCCAGATACAGCCAGACCGAGCTGTCACCTCCAGCTGAC]
[+] EMBL CA332977 [ GAGGTCCGGGCCAACCAGTCGCATTTTCAGTATTCGGCTAACTAATGTTTGAATTATAGTTGACATGGATTTCGACGCTTTATTTAACGAAAAGACATTCCAATTTTCGGACTTCCAGGAGTTCACGGGAGGCCTGCATCTCTCCCTGTGCCATGATGCTGGCTCTGGTTTACATCGAAAGGCTCCGACACAGAAACCCTGAATACCTTCAAAAGATCTCCTCCTCAGACCTTTTCCTGATCTCCATGATGGTTGCTAGCAAGTACTTGTATGATGAAGGGGAGGAAGAGGAGGTTTTCAATGACGAATGGGGAGCGGCCGGAAAGCTGGATGTCAAAACTGTCAATAACCTGGAGATGAGCTTCTTGAACGCCATTGAATGGAGCCTCTTCACAGACCCTAATGACCTGCTTGATTTACTAAGTCAACTAGAGGCCAGCATTGCAGAGCGTCAGGGGATGAAACGGGGCTGGTTC ]
consensusID : consensus_2193#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 630 fasta sequence
[CTGTGCTAGTAGCGAGCTAGTTGGGCGAGGTCCGGGCCAACCAGTCGCATTTTCAGTATTCGGCTAACTAATGTTTGAATTATAGTTGACATGGATTTCGACGCTTTATTTAACGAAAAGACATTCCAATTTTCGGACTTCCAGGAGTTCACGTTTCTTCCTGGACACCGTAAGTTAAGAGAACGCATGAGAAAGCGACTGTATTATGGCCTGGACACAGATGTGACTTTAGATTCCTTATCTTGCCCTGTTACAGATATTGCAATTGAAATCTTCCAAAAGTCTGCACCAAGCCCAATCCGAAGGCTTCACAAGACATATGCTGCTCATGTCTCCAGGGAGGCCTGCATCTCTCCCTGTGCCATGATGCTGGCTCTGGTTTACATCGAAAGGCTCCGACACAGAAACCCTGAATACCTTCAAAAGATCTCCTCCTCAGACCTTTTCCTGATCTCCATGATGGTTGCTAGCAAGTACTTGTATGATGAAGGGGAGGAAGAGGAGGTTTTCAATGACGAATGGGGAGCGGNCGGAAAGCTGGATGTCAAAACTGTCAATAACCTGGAGATGAGCTTCTTGAACGCCATTGAATGGAGCCTCTTCACAGACCCTAATGACCTTCTTGAATTA]
[+] EMBL BU808271 [CTGTGCTAGTAGCGAGCTAGTTGGGCGAGGTCCGGGCCAACCAGTCGCATTTTCAGTATTCGGCTAACTAATGTTTGAATTATAGTTGACATGGATTTCGACGCTTTATTTAACGAAAAGACATTCCAATTTTCGGACTTCCAGGAGTTCACGTTTCTTCCTGGACACCGTAAGTTAAGAGAACGCATGAGAAAGCGACTGTATTATGGCCTGGACACAGATGTGACTTTAGATTCCTTATCTTGTCCTGTTACAGATATTGCAATTGAAATCTTCCAAAAGTCTGCACCAAGCCCAATCCGAAAGCTTCACAAGACATATGCTGCTCATGTCTCCAGGGAGGCCTGCATCTCTCCCTGTGCCATGATGCTGGCTCTGGTTTACATCGAAAGGCTCCGACACAGAAACCCTGAATACCTTCAAAAGATCTCCTCCTCAGACCTTTTCCTGATCTCCATGATGGTTGCTAGCAAGTACTTGTATGATGAAGGGGAGGAAGAGGAGGTTTTCAATGACGAATGGGGAGCGGNCGGAAAGCTGGATGTCAAAACTGTCAATAACCTGGAGATGAGCTTCTTGAACGCCATTGAATGGAGCCTCTTCACAGACCCTAATGACCTTCTTGAATTA]
[+] EMBL CA332726 [ TTAACGAAAAGACATTCCAATTTTCGGACTTCCAGGAGTTCACGTTTCTTCCTGGACACCGTAAGTTAAGAGAACGCATGAGAAAGCGACTGTATTATGGCCTGGACACAGATGTGACTTTAGATTCCTTATCTTGCCCTGTTACAGATATTGCAATTGAAATCTTCCAAAAGTCTGCACCAAGCCCAATCCGAAGGCTTCACAAGACATATGCTGCTCATGTCTCCAGGGAGGCCTGCATCTCTCCCTGTGCCATGATGCTGGCTCTGGTTTACATCGAAAGGCTCCGACACAGAAACCCTGAATACCTTCAAAAGATCTCCTCCTCAGACCTTTTCCTGATCTCCATGATGGTTGCTAGCAAGTACTTGTATGATGAAGGGGAGGAAGAGGAG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2193#0 --------GTCCCTAGCTAGTCGGGCGAGGTCCGGGCCAACCAGTCGCATTTTCAGTATT 52
consensus_2193#1 CTGTGCTAGTAGCGAGCTAGTTGGGCGAGGTCCGGGCCAACCAGTCGCATTTTCAGTATT 60
** * ******* **************************************
consensus_2193#0 CGGCTAACTAATGTTTGAATTATAGTTGACATGGATTTCGACGCTTTATTTAACGAAAAG 112
consensus_2193#1 CGGCTAACTAATGTTTGAATTATAGTTGACATGGATTTCGACGCTTTATTTAACGAAAAG 120
************************************************************
consensus_2193#0 ACATTCCAATTTTCGGACTTCCAGGAGTTCACGGGAGG-CCTGCATCTCTCCCTGTGCCA 171
consensus_2193#1 ACATTCCAATTTTCGGACTTCCAGGAGTTCACGTTTCTTCCTGGACACCGTAAGTTAAGA 180
********************************* **** * * * *
consensus_2193#0 TGATGCTGGCTCTGGTTTACATCGAAAGGCTCCGACACAGAAACCCTGAATACCTTCAAA 231
consensus_2193#1 GAACGCATGAGAAAGCGACTGTATTATGGCCTGGACACAGATGTG------ACTTT---- 230
* ** * * * * *** ******** ** **
consensus_2193#0 AGATCTCCTCCTCAGACCTTTTCCTGATCTCCATGATGGTTGCTAGCAAGTACTTGTATG 291
consensus_2193#1 AGATTCCTTATCTTGCCCTGTTACAGATATTGCAATTGAAATCTTCCAAAAGTCTGCACC 290
**** * * * *** ** * *** * ** ** *** ** *
consensus_2193#0 ATGAAGGGGAGGAAGAGGAGGTTTTCAATGACGAATGGGGAGCG-GCCGGAAAGCTGGAT 350
consensus_2193#1 A-----AGCCCAATCCGAAGGCTTCACAAGACATATGCTGCTCATGTCTCCAGGGAGGCC 345
* * * * *** ** * *** *** * * * * * * **
consensus_2193#0 GTCAAAACTGTCAATAACCTGGAGATGAGCTTCTTGAACGCCATTGAATGGAGCCTCTTC 410
consensus_2193#1 TGCATCTCTCCCTGTGCCATGATGCTGG---CTCTGGTTTACATCGAAAGGCTCCGACAC 402
** ** * * * ** * ** ** *** *** ** ** *
consensus_2193#0 ACAGACCCTAATGACCTGCTTGATTTACTAAGTCAACTAGAGGCCAGCATTGCAGAGCGT 470
consensus_2193#1 AGAAACCCTGAATACCTTCAAAAGAT-----CTCCTCCTCAGACC--TTTTCCTGATCTC 455
* * ***** * **** * * * ** * ** ** ** * ** *
consensus_2193#0 CAGGGGATGAAACGGGGCTGGTTCACATACACGGATCTCTGCGTACTGCTGGAGCAGTCG 530
consensus_2193#1 CATG--ATG----GTTGCTAG--CAAGTACTTGTAT---GATGAAGGGGAGGAAGAGGAG 504
** * *** * *** * ** *** * ** * * * *** ** *
consensus_2193#0 GCATGGAGTCAAGCTCTTGCAGCCATCTACCAGCACTTTACTAAGATTTCTTGCATGCTC 590
consensus_2193#1 GTTTTCAATGACGAATGGGGAGCGGNCGGAAAGCTGGATGTCAAAACTGTCAATAACCTG 564
* * * * * * * *** * *** * ** * * * **
consensus_2193#0 GGACTCCTCTACCTGACCAGCGTGGC---GGGCCTCATCGCCACCTGTGCTGTGCTGCAG 647
consensus_2193#1 GAGATGAGCTTCTTGAACGCCATTGAATGGAGCCTCTTCACAGACCCTAATGACCTTCTT 624
* * ** * *** * * * * * ***** ** * * * ** ** *
consensus_2193#0 CAGCTCAGTATTTCCAGATACAGCCAGACCGAGCTGTCACCTCCAGCTGAC 698
consensus_2193#1 GAATTA--------------------------------------------- 630
* *
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |