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Takifugu rubripes
cluster # 2201 cluster # 2201       Sequences # 4       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2201#0 length = 451 sequences # 3  
 consensus_2201#1 length = 422 sequences # 1  
consensusID : consensus_2201#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 451
fasta sequence 
                              [CACGTGAACGTCGGCAGCTAAAGGAGCTGCAGAACTTTGCTGAGGAGCAGCAGAACATAGACGTGATCCAAGAACCTACCGCCCAACCTGACCTCGAGCTGAAGGAGGACGCAGAGCCGCCGCAGACCTCACCGTCTCCACCTCCAGGGCCTGAACCAGCGCAGCCCTCTGAACCAGAGCCTCAGCCAGAACCAGAACCCCACCCAGATACTCAGCCAGATACTCAGCCAGCAGAACCCGTAACCCAGCAGCCACAGAAGACAGAGGACGGCCACAGCCCCCAGGCTGACAAAGCTCCAAGCAAAGAGGAGGAGGATGC-TGGGGAGGACTGTGGAGCTCCAGTCAGCTGTGACGCCTTTAAGAG-CTGCCTGATGCGCAACCCTCACACCTCCGAGTGCCTTGGCAACATCAACGCATTTTTTAAAGAGAACGGCATTTCCCGCCCGGCATT]

[+] EMBL CA333236             [CACGTGAACGTCGGCAGCTAAAGGAGCTGCAGAACTTTGCTGAGGAGCAGCAGAACATAGACGTGATCCAAGAACCTACCGCCCAACCTGACCTCGAGCTGAAGGAGGACGCAGAGCCGCCGCAGACCTCACCGTCTCCACCTCCAGGTCCTGAATCAGCGCAGCCCTCTGAACCAGAGCCTCAGCCAGAACCAGAACCCCACCCAGATACTCAGCCAGATACTCAGCCAGCAGAACCCGTAACCCAGCAGCCACAGAAGACAGAGGACGGCCACAGCCCCCAGGCTGACAAAGCTCCAAGCAAAGAGGAGGAGGATGC TGGGGAGGACTGTGGAGCTCCAGTCAGCTGTGACGCCTTTAAGAG CTGCCTGATGCGCATCCCTCACACCTCCGAGTGCCTTGGCAACATCAACGCATTTTTTAAAGAGAACGGCATTTCCCGCCCGGCATT]
[+] EMBL FR0060287            [                                       CTGAGGAGCAGCACATCATAGACGTGATCCAAGAACCTACCGCCCAACCTGACCTCGAGCTGAAGGAGGACGCAGAGCCGCCGCAGACCTCACCGTCTCCACCTCCAGGGCCTGAACCAGCGCACCCCTCTGAACCAGAGCCTCAGCCAGAACCAGAACCCCACCCAGATACTCAGCCAGATACTCAGCCAGCAGAACCCGTAACCCAGCAGCCACAGAAGACAGAGGACGGCCACAGCCCCCAGGCTGACAAAGCTCCAAGCAAAGAGGAGGAGGATGCTTGGGCAGCACTGTGGAGCTCCAGTCAGCTGTGACGCCTTTAAGAG CTGCCTGATGCGCAACCCTC                                                                   ]
[+] EMBL FR0060080            [                                                                                               GAGCTGAAGGAGGACGCAGAGCCGCCGCAGACCTCACCGTCTCCACCTCCAGGGCCTGAACCAGCGCAGCCCTCTGAACCAGAGCCTCAGCCAGAACCAGAACCCCACCCAGATACTCAGCCAGATACTCAGCCAGGAGAACCCGGAACCCAGCAGCCACAGAAGACAGAGGCCGGCCACAGCCCCCAGGCTGACAGAGCTCCAAGCAAAGAGGAGGAGGATGC TGGGGAGGACTGTGGAGCTCCAGTCAGCTGTAACGCCTTTAAGAGCCTGCCTGATGCGCAA                                                                        ]




>consensus_2201#0
CACGTGAACGTCGGCAGCTAAAGGAGCTGCAGAACTTTGCTGAGGAGCAGCAGAACATAG
ACGTGATCCAAGAACCTACCGCCCAACCTGACCTCGAGCTGAAGGAGGACGCAGAGCCGC
CGCAGACCTCACCGTCTCCACCTCCAGGGCCTGAACCAGCGCAGCCCTCTGAACCAGAGC
CTCAGCCAGAACCAGAACCCCACCCAGATACTCAGCCAGATACTCAGCCAGCAGAACCCG
TAACCCAGCAGCCACAGAAGACAGAGGACGGCCACAGCCCCCAGGCTGACAAAGCTCCAA
GCAAAGAGGAGGAGGATGCTGGGGAGGACTGTGGAGCTCCAGTCAGCTGTGACGCCTTTA
AGAGCTGCCTGATGCGCAACCCTCACACCTCCGAGTGCCTTGGCAACATCAACGCATTTT
TTAAAGAGAACGGCATTTCCCGCCCGGCATT

consensusID : consensus_2201#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 422
fasta sequence 
                              [TTTTGTTAACGAATTTTGAAAAAGTGCGTGTTGCCGCGACGCTCGCGAGCGTTTGCGTCGGTTGCGCGCACGTGAACGTCGGCAGCTAAAGGAGCTGCAGAACATAGACGTGATCCAAGAACCTACCGCCCAACCTGACCTCGAGCTGAAGGAGGACGCAGAGCCGCCGCAGACCTCACCGTCTCCACCTCCAGGTCCTGAATCAGCGCAGCCCTCTGAACCAGAGCCTCAGCCAGAACCAGAACCCCACCCAGATACTCAGCCAGATACTCAGCCAGCAGAACCCGTAACCCAGCAGCCACAGAAGACAGAGGACGGCCACAGCCCCCAGGCTGACAAAGCTCCAAGCAAAACTTTCCTGGTGTGAACGTTGAATGATGCTGACTCCTCATGTGCTTGCTGTTATTGGTAGGAGGAGGAGG]

[+] EMBL CA590282             [TTTTGTTAACGAATTTTGAAAAAGTGCGTGTTGCCGCGACGCTCGCGAGCGTTTGCGTCGGTTGCGCGCACGTGAACGTCGGCAGCTAAAGGAGCTGCAGAACATAGACGTGATCCAAGAACCTACCGCCCAACCTGACCTCGAGCTGAAGGAGGACGCAGAGCCGCCGCAGACCTCACCGTCTCCACCTCCAGGTCCTGAATCAGCGCAGCCCTCTGAACCAGAGCCTCAGCCAGAACCAGAACCCCACCCAGATACTCAGCCAGATACTCAGCCAGCAGAACCCGTAACCCAGCAGCCACAGAAGACAGAGGACGGCCACAGCCCCCAGGCTGACAAAGCTCCAAGCAAAACTTTCCTGGTGTGAACGTTGAATGATGCTGACTCCTCATGTGCTTGCTGTTATTGGTAGGAGGAGGAGG]




>consensus_2201#1
TTTTGTTAACGAATTTTGAAAAAGTGCGTGTTGCCGCGACGCTCGCGAGCGTTTGCGTCG
GTTGCGCGCACGTGAACGTCGGCAGCTAAAGGAGCTGCAGAACATAGACGTGATCCAAGA
ACCTACCGCCCAACCTGACCTCGAGCTGAAGGAGGACGCAGAGCCGCCGCAGACCTCACC
GTCTCCACCTCCAGGTCCTGAATCAGCGCAGCCCTCTGAACCAGAGCCTCAGCCAGAACC
AGAACCCCACCCAGATACTCAGCCAGATACTCAGCCAGCAGAACCCGTAACCCAGCAGCC
ACAGAAGACAGAGGACGGCCACAGCCCCCAGGCTGACAAAGCTCCAAGCAAAACTTTCCT
GGTGTGAACGTTGAATGATGCTGACTCCTCATGTGCTTGCTGTTATTGGTAGGAGGAGGA
GG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2201#0      -----------------------------------------CACGTGAACGTCGGCAGCT 19
consensus_2201#1      TTTTGTTAACGAATTTTGAAAAAGTGCGTGTTGCCGCGACGCTCGCGAGCGTTTGCGTCG 60
                                                               * ** ** ***  **  * 

consensus_2201#0      AAAGGAGCTGCA-GAACTTTGCTG-----AGGAGCAGCAGAACATAGACGTGATCCAAGA 73
consensus_2201#1      GTTGCGCGCACGTGAACGTCGGCAGCTAAAGGAGCTGCAGAACATAGACGTGATCCAAGA 120
                         *      *  **** * *        ****** ************************

consensus_2201#0      ACCTACCGCCCAACCTGACCTCGAGCTGAAGGAGGACGCAGAGCCGCCGCAGACCTCACC 133
consensus_2201#1      ACCTACCGCCCAACCTGACCTCGAGCTGAAGGAGGACGCAGAGCCGCCGCAGACCTCACC 180
                      ************************************************************

consensus_2201#0      GTCTCCACCTCCAGGGCCTGAACCAGCGCAGCCCTCTGAACCAGAGCCTCAGCCAGAACC 193
consensus_2201#1      GTCTCCACCTCCAGGTCCTGAATCAGCGCAGCCCTCTGAACCAGAGCCTCAGCCAGAACC 240
                      *************** ****** *************************************

consensus_2201#0      AGAACCCCACCCAGATACTCAGCCAGATACTCAGCCAGCAGAACCCGTAACCCAGCAGCC 253
consensus_2201#1      AGAACCCCACCCAGATACTCAGCCAGATACTCAGCCAGCAGAACCCGTAACCCAGCAGCC 300
                      ************************************************************

consensus_2201#0      ACAGAAGACAGAGGACGGCCACAGCCCCCAGGCTGACAAAGCTCCAAGCAAAGAGGAG-- 311
consensus_2201#1      ACAGAAGACAGAGGACGGCCACAGCCCCCAGGCTGACAAAGCTCCAAGCAAAACTTTCCT 360
                      ****************************************************        

consensus_2201#0      GAGGATGCTGGGGAGGACTGTGGAGCTCCAGTCAGCTGTGACGCCTTTAAGAGCTGCCTG 371
consensus_2201#1      GGTGTGAACGTTGAATGATGCTGACTCCTCATGTGCT-TGCTGTTATTGGTAGGAGGAGG 419
                      *  *     *  **    **  **   *   *  *** **  *   **   **  *   *

consensus_2201#0      ATGCGCAACCCTCACACCTCCGAGTGCCTTGGCAACATCAACGCATTTTTTAAAGAGAAC 431
consensus_2201#1      AGG--------------------------------------------------------- 422
                      * *                                                         

consensus_2201#0      GGCATTTCCCGCCCGGCATT 451
consensus_2201#1      --------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)