These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2201#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 451 fasta sequence [CACGTGAACGTCGGCAGCTAAAGGAGCTGCAGAACTTTGCTGAGGAGCAGCAGAACATAGACGTGATCCAAGAACCTACCGCCCAACCTGACCTCGAGCTGAAGGAGGACGCAGAGCCGCCGCAGACCTCACCGTCTCCACCTCCAGGGCCTGAACCAGCGCAGCCCTCTGAACCAGAGCCTCAGCCAGAACCAGAACCCCACCCAGATACTCAGCCAGATACTCAGCCAGCAGAACCCGTAACCCAGCAGCCACAGAAGACAGAGGACGGCCACAGCCCCCAGGCTGACAAAGCTCCAAGCAAAGAGGAGGAGGATGC-TGGGGAGGACTGTGGAGCTCCAGTCAGCTGTGACGCCTTTAAGAG-CTGCCTGATGCGCAACCCTCACACCTCCGAGTGCCTTGGCAACATCAACGCATTTTTTAAAGAGAACGGCATTTCCCGCCCGGCATT] [+] EMBL CA333236 [CACGTGAACGTCGGCAGCTAAAGGAGCTGCAGAACTTTGCTGAGGAGCAGCAGAACATAGACGTGATCCAAGAACCTACCGCCCAACCTGACCTCGAGCTGAAGGAGGACGCAGAGCCGCCGCAGACCTCACCGTCTCCACCTCCAGGTCCTGAATCAGCGCAGCCCTCTGAACCAGAGCCTCAGCCAGAACCAGAACCCCACCCAGATACTCAGCCAGATACTCAGCCAGCAGAACCCGTAACCCAGCAGCCACAGAAGACAGAGGACGGCCACAGCCCCCAGGCTGACAAAGCTCCAAGCAAAGAGGAGGAGGATGC TGGGGAGGACTGTGGAGCTCCAGTCAGCTGTGACGCCTTTAAGAG CTGCCTGATGCGCATCCCTCACACCTCCGAGTGCCTTGGCAACATCAACGCATTTTTTAAAGAGAACGGCATTTCCCGCCCGGCATT] [+] EMBL FR0060287 [ CTGAGGAGCAGCACATCATAGACGTGATCCAAGAACCTACCGCCCAACCTGACCTCGAGCTGAAGGAGGACGCAGAGCCGCCGCAGACCTCACCGTCTCCACCTCCAGGGCCTGAACCAGCGCACCCCTCTGAACCAGAGCCTCAGCCAGAACCAGAACCCCACCCAGATACTCAGCCAGATACTCAGCCAGCAGAACCCGTAACCCAGCAGCCACAGAAGACAGAGGACGGCCACAGCCCCCAGGCTGACAAAGCTCCAAGCAAAGAGGAGGAGGATGCTTGGGCAGCACTGTGGAGCTCCAGTCAGCTGTGACGCCTTTAAGAG CTGCCTGATGCGCAACCCTC ] [+] EMBL FR0060080 [ GAGCTGAAGGAGGACGCAGAGCCGCCGCAGACCTCACCGTCTCCACCTCCAGGGCCTGAACCAGCGCAGCCCTCTGAACCAGAGCCTCAGCCAGAACCAGAACCCCACCCAGATACTCAGCCAGATACTCAGCCAGGAGAACCCGGAACCCAGCAGCCACAGAAGACAGAGGCCGGCCACAGCCCCCAGGCTGACAGAGCTCCAAGCAAAGAGGAGGAGGATGC TGGGGAGGACTGTGGAGCTCCAGTCAGCTGTAACGCCTTTAAGAGCCTGCCTGATGCGCAA ] consensusID : consensus_2201#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 422 fasta sequence [TTTTGTTAACGAATTTTGAAAAAGTGCGTGTTGCCGCGACGCTCGCGAGCGTTTGCGTCGGTTGCGCGCACGTGAACGTCGGCAGCTAAAGGAGCTGCAGAACATAGACGTGATCCAAGAACCTACCGCCCAACCTGACCTCGAGCTGAAGGAGGACGCAGAGCCGCCGCAGACCTCACCGTCTCCACCTCCAGGTCCTGAATCAGCGCAGCCCTCTGAACCAGAGCCTCAGCCAGAACCAGAACCCCACCCAGATACTCAGCCAGATACTCAGCCAGCAGAACCCGTAACCCAGCAGCCACAGAAGACAGAGGACGGCCACAGCCCCCAGGCTGACAAAGCTCCAAGCAAAACTTTCCTGGTGTGAACGTTGAATGATGCTGACTCCTCATGTGCTTGCTGTTATTGGTAGGAGGAGGAGG] [+] EMBL CA590282 [TTTTGTTAACGAATTTTGAAAAAGTGCGTGTTGCCGCGACGCTCGCGAGCGTTTGCGTCGGTTGCGCGCACGTGAACGTCGGCAGCTAAAGGAGCTGCAGAACATAGACGTGATCCAAGAACCTACCGCCCAACCTGACCTCGAGCTGAAGGAGGACGCAGAGCCGCCGCAGACCTCACCGTCTCCACCTCCAGGTCCTGAATCAGCGCAGCCCTCTGAACCAGAGCCTCAGCCAGAACCAGAACCCCACCCAGATACTCAGCCAGATACTCAGCCAGCAGAACCCGTAACCCAGCAGCCACAGAAGACAGAGGACGGCCACAGCCCCCAGGCTGACAAAGCTCCAAGCAAAACTTTCCTGGTGTGAACGTTGAATGATGCTGACTCCTCATGTGCTTGCTGTTATTGGTAGGAGGAGGAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2201#0 -----------------------------------------CACGTGAACGTCGGCAGCT 19 consensus_2201#1 TTTTGTTAACGAATTTTGAAAAAGTGCGTGTTGCCGCGACGCTCGCGAGCGTTTGCGTCG 60 * ** ** *** ** * consensus_2201#0 AAAGGAGCTGCA-GAACTTTGCTG-----AGGAGCAGCAGAACATAGACGTGATCCAAGA 73 consensus_2201#1 GTTGCGCGCACGTGAACGTCGGCAGCTAAAGGAGCTGCAGAACATAGACGTGATCCAAGA 120 * * **** * * ****** ************************ consensus_2201#0 ACCTACCGCCCAACCTGACCTCGAGCTGAAGGAGGACGCAGAGCCGCCGCAGACCTCACC 133 consensus_2201#1 ACCTACCGCCCAACCTGACCTCGAGCTGAAGGAGGACGCAGAGCCGCCGCAGACCTCACC 180 ************************************************************ consensus_2201#0 GTCTCCACCTCCAGGGCCTGAACCAGCGCAGCCCTCTGAACCAGAGCCTCAGCCAGAACC 193 consensus_2201#1 GTCTCCACCTCCAGGTCCTGAATCAGCGCAGCCCTCTGAACCAGAGCCTCAGCCAGAACC 240 *************** ****** ************************************* consensus_2201#0 AGAACCCCACCCAGATACTCAGCCAGATACTCAGCCAGCAGAACCCGTAACCCAGCAGCC 253 consensus_2201#1 AGAACCCCACCCAGATACTCAGCCAGATACTCAGCCAGCAGAACCCGTAACCCAGCAGCC 300 ************************************************************ consensus_2201#0 ACAGAAGACAGAGGACGGCCACAGCCCCCAGGCTGACAAAGCTCCAAGCAAAGAGGAG-- 311 consensus_2201#1 ACAGAAGACAGAGGACGGCCACAGCCCCCAGGCTGACAAAGCTCCAAGCAAAACTTTCCT 360 **************************************************** consensus_2201#0 GAGGATGCTGGGGAGGACTGTGGAGCTCCAGTCAGCTGTGACGCCTTTAAGAGCTGCCTG 371 consensus_2201#1 GGTGTGAACGTTGAATGATGCTGACTCCTCATGTGCT-TGCTGTTATTGGTAGGAGGAGG 419 * * * ** ** ** * * *** ** * ** ** * * consensus_2201#0 ATGCGCAACCCTCACACCTCCGAGTGCCTTGGCAACATCAACGCATTTTTTAAAGAGAAC 431 consensus_2201#1 AGG--------------------------------------------------------- 422 * * consensus_2201#0 GGCATTTCCCGCCCGGCATT 451 consensus_2201#1 -------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |