|
These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2202#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 607 fasta sequence
[CATTTGTGCTGAGCACGTTGTCGCTTCGTACGTATAGTAAGCCGCCGGGAAGTGCCTTACGATGACTGGGCGAGCACGTGCAAGATCACGCGGCAGGGCTCGTGGCACGGAGACCGCAGCTCCTGGAGCCACTCGAGAGCCTGCTACAGCGACTAGTGCTGCTCCAGAAGCCGAAGGAGATCTGGTTGGTAGGGGCAGACAGAAAGGTGTCCCAGGACAACTTGCTCAAAAAACTGTTGTTGA-GATGTCAGTTGGATTTCAACAAGTAAAACTAGGAGAAAGAGGTGGACGCCGCCGGGATTTCAATGATACAGGGGTCAACACCAGACAGTTTATAGAGCATGTAAAGGAGTCGAAGAGTGGATCAAGTGGCTCTGTCGTTCCATTGATAGCAAACTTCTTTCGTATTGTGTCCCGCCCTCAGTGGGTTCTGTATCAGTATCACGTGGACTATCAACCACCAATCGAGTCGCGGCGTTTGCGAACTGCTCTGCTCTTTCAGCATGAAGTATTGGGTATAGCACGAACCTCTGAAGGAGCTCTCCTTTTCCTACCTCATAGACTTCCGGACAAGGCGACTGTGCTGCACAGTGAGACCCGCAATGGA]
[+] EMBL CA333230 [CATTTGTGCTGAGCACGTTGTCGCTTCGTACGTATAGTAAGCCCCCGGGAAGTGCCTTACGATGACCGGGCGAGCACGTGCAAGATCACGCGGCAGGGCTCGTGGCACGGAGACCGCAGCTCCTGGAGCCACTCGAGAGCCTGCTACAGCGACTAGTGCTGCTCCAGAAGCTGAAGGAGATCTGGTTGGTAGGGGCAGACAGAAAGGTGTCCCAGGACAACTTGCTCAAAAAACTGTTGTTGATTATGTCAGTTGGATTTCAACAAGTAAAACTAGGAGAAAGAGGTGGACGCCGCCGGGATTTCAATGATACAGGGGTCAACACCAGACAGTTTATAGAGCATGTAAAGGAGTCGAAGAGTGGATCAAGTGGCTCTGTCGTTCCATTGATAGCAAACTTCTTTCGTATTGTGTCCCGCCCTCAGTGGGTTCTGTATCAGTATCACGTGGACTATCAACCACCAATCGAGTCGCGGCGTTTGCGAACTGCTCTGCTCTTTCAGCATGAAGTATTGGGTATAGCACGAACCTCTGAA ]
[+] EMBL CA333304 [ GTACGTATAGTAAGCCGCCGGGAAGTGCCTTACGATGACTGGGCGAGCACGTGCAAGATCACGCGGCAGGGCTCGTGGCACGGAGACCGCAGCTCCTGGAGCCACTCGAGAGCCTGCTACAGCGACTAGTGCTGCTCCAGAAGCCGAAGGAGATCTGGTTGGTAGGGGCAGACAGAAAGGTGTCCCAGGACAACTTGCTCAAAAAACTGTTGTTGA GATGTCAGTTGGATTTCAACAAGTAAAACTAGGAGAAAGAGGTGGACGCCGCCGGGATTTCAATGATACAGGGGTCAACACCAGACAGTTTATAGAGCATGTAAAGGAGTCGAAGAGTGGATCAAGTGGCTCTGTCGTTCCATTGATAGCAAACTTCTTTCGTATTGTGTCCCGCCCTCAGTGGGTTCTGTATCAGTATCACGTGGACTATCAACCACCAATCGAGTCGCGGCGTTTGCGAACTGCTCTGCTCTTTCAGCATGAAGTATTGGGTATAGCACGAACCTTTGATGGAGCTCTCCTTTTCCTACCTCATAGACTTCCGGACAAGGCGACTGTGCTGCACAGTGAGACCCGCAATGGA]
[+] EMBL FR0060222 [ CCTTACGATGACTGGGCGAGCACGTGCAAGATCACGCGGCAGGGCTCGTGGCACGGAGACCGCAGCTCCTGGAGCCACTCGAGAGCCTGCTACAGCGACTAGTGCTGCTCCAGAAGCCGAAGGAGATCTGGTTGGTAGGGGCAGACAGAAAGGTGTCCCAGGACAACTTGCTCAAAAAACTGTTGTTGA GATGTCAGTTGGATTTCAACAAGTAAAACTAGGAGAAAGAGGTGGACGCCGCCGGGATTTCAATGATACAGGGGTCAACACCAGACAGTTTATAGAGCAT ]
consensusID : consensus_2202#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 530 fasta sequence
[TTGTCGCTTCGTACGTATAGTAAGCCGCCGGGAAGTGCCTTACCATGACTGGGCGAGCACGTGCAAGATCACGCGGCAGGGCTCGTGGCACGGAGACCGCAGCTCCTGGAGCCGTAAGCGTTTCGTCACTTCCTACTCGAGAGCCTGCTACAGCGACTAGTGCTGCTCCAGAAGCCGAAGGAGATCTGGTTGGTAGGGGCAGACAGAAAGGTGTCCCAGGACAACTTGCTCAAAAAACTGTTGTTGAGATGTCAGTTGGATTTCAACAAGTAAAACTAGGAGAAAGAGGTGGACGCCGCCGGGATTTCAATGATACAGGGGTCAACACCAGACAGTTTATAGAGCATGTAAAGGAGTCGAAGAGTGGATCAAGTGGCTCTGTCGTTCCATTGATAGCAAACTTCTTTCGTATTGTGTCCCGCCCTCAGTGGGTTCTGTATCAGTATCACGTGGACTATCAACCGCCAATCGAGTCGCGGCGTTTGCGAACTGCTCTGCTCTTTCAGCATGAAGTATTGGGTATAGCACGA]
[+] EMBL CA590296 [TTGTCGCTTCGTACGTATAGTAAGCCGCCGGGAAGTGCCTTACCATGACTGGGCGAGCACGTGCAAGATCACGCGGCAGGGCTCGTGGCACGGAGACCGCAGCTCCTGGAGCCGTAAGCGTTTCGTCACTTCCTACTCGAGAGCCTGCTACAGCGACTAGTGCTGCTCCAGAAGCCGAAGGAGATCTGGTTGGTAGGGGCAGACAGAAAGGTGTCCCAGGACAACTTGCTCAAAAAACTGTTGTTGAGATGTCAGTTGGATTTCAACAAGTAAAACTAGGAGAAAGAGGTGGACGCCGCCGGGATTTCAATGATACAGGGGTCAACACCAGACAGTTTATAGAGCATGTAAAGGAGTCGAAGAGTGGATCAAGTGGCTCTGTCGTTCCATTGATAGCAAACTTCTTTCGTATTGTGTCCCGCCCTCAGTGGGTTCTGTATCAGTATCACGTGGACTATCAACCGCCAATCGAGTCGCGGCGTTTGCGAACTGCTCTGCTCTTTCAGCATGAAGTATTGGGTATAGCACGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2202#0 CATTTGTGCTGAGCACGTTGTCGCTTCGTACGTATAGTAAGCCGCCGGGAAGTGCCTTAC 60
consensus_2202#1 -----------------TTGTCGCTTCGTACGTATAGTAAGCCGCCGGGAAGTGCCTTAC 43
*******************************************
consensus_2202#0 GATGACTGGGCGAGCACGTGCAAGATCACGCGGCAGGGCTCGTGGCACGGAGACCGCAGC 120
consensus_2202#1 CATGACTGGGCGAGCACGTGCAAGATCACGCGGCAGGGCTCGTGGCACGGAGACCGCAGC 103
***********************************************************
consensus_2202#0 TCCTGGAGCC---------------------ACTCGAGAGCCTGCTACAGCGACTAGTGC 159
consensus_2202#1 TCCTGGAGCCGTAAGCGTTTCGTCACTTCCTACTCGAGAGCCTGCTACAGCGACTAGTGC 163
********** *****************************
consensus_2202#0 TGCTCCAGAAGCCGAAGGAGATCTGGTTGGTAGGGGCAGACAGAAAGGTGTCCCAGGACA 219
consensus_2202#1 TGCTCCAGAAGCCGAAGGAGATCTGGTTGGTAGGGGCAGACAGAAAGGTGTCCCAGGACA 223
************************************************************
consensus_2202#0 ACTTGCTCAAAAAACTGTTGTTGAGATGTCAGTTGGATTTCAACAAGTAAAACTAGGAGA 279
consensus_2202#1 ACTTGCTCAAAAAACTGTTGTTGAGATGTCAGTTGGATTTCAACAAGTAAAACTAGGAGA 283
************************************************************
consensus_2202#0 AAGAGGTGGACGCCGCCGGGATTTCAATGATACAGGGGTCAACACCAGACAGTTTATAGA 339
consensus_2202#1 AAGAGGTGGACGCCGCCGGGATTTCAATGATACAGGGGTCAACACCAGACAGTTTATAGA 343
************************************************************
consensus_2202#0 GCATGTAAAGGAGTCGAAGAGTGGATCAAGTGGCTCTGTCGTTCCATTGATAGCAAACTT 399
consensus_2202#1 GCATGTAAAGGAGTCGAAGAGTGGATCAAGTGGCTCTGTCGTTCCATTGATAGCAAACTT 403
************************************************************
consensus_2202#0 CTTTCGTATTGTGTCCCGCCCTCAGTGGGTTCTGTATCAGTATCACGTGGACTATCAACC 459
consensus_2202#1 CTTTCGTATTGTGTCCCGCCCTCAGTGGGTTCTGTATCAGTATCACGTGGACTATCAACC 463
************************************************************
consensus_2202#0 ACCAATCGAGTCGCGGCGTTTGCGAACTGCTCTGCTCTTTCAGCATGAAGTATTGGGTAT 519
consensus_2202#1 GCCAATCGAGTCGCGGCGTTTGCGAACTGCTCTGCTCTTTCAGCATGAAGTATTGGGTAT 523
***********************************************************
consensus_2202#0 AGCACGAACCTCTGAAGGAGCTCTCCTTTTCCTACCTCATAGACTTCCGGACAAGGCGAC 579
consensus_2202#1 AGCACGA----------------------------------------------------- 530
*******
consensus_2202#0 TGTGCTGCACAGTGAGACCCGCAATGGA 607
consensus_2202#1 ----------------------------
|
|||||||
| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |