These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2206#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 739 fasta sequence [CGCAACCATGCCCGGTGAAGCCACAGAAACTGTCCCTGTCACCGAGCAGGAGATGCAGCAGCCTCAAGTGGCGACTGGGTCCGGAACTGAATCAGACAGTGACGACTCTGTCCCAGAGCTGGAGGAACAGGACTCCGCACAGGCACAGGCACAGCAGGCTCAGCTGGCAGCAGCTGCTGAGATTGATGAAGAACCCGTCAGCAAAGCCAAACAGAGCCGGAGTGAAAAGAAGGCACGAGAAGCAATGTCAAAGCTCGGTCTCAGGCAGGTAACGGGGGTCACACGAGTCACGATTCGCAAGTCAAGGAACATCTTGTTCGTCATTACCAAACCAGACGTCTACAAGAGTCCCGCGTCAGACACATACATCGTCTTTGGTGAAGCTAAGATCGAAGATCTTTCCCAGCAAGCTCAGCTGGGTGCGGCAGAGAAGTTCAAGGTCCAGGGAGAAGCTGTATCAAGCATCCAGGAAAACACACAGACGCCAACAGTACAGGAGGAGAGCGAAGAAGAGGAGGTTGATGAGACCGGCGTTGAGGTCAAGGACATCGAACTGGTCATGTCACAAGCCAACGTGTCACGGGCGAAGGCAATACGCGCCCTGAAGAACAACAACAACGACATCGTCAACGCCATCATGGAATTGACGATGTAGGGGGACTCTGGAAGAGTCGGGGTTGAAGAAAGGTTGCTGATTTAAGCTCATTTATACAATTTATTATACCTGAGGTGGGAATAA] [+] EMBL FR0055527 [CGCAACCATGCCCGGTGAAGCCACAGAAACTGTCCCTGTCACCGAGCAGGAGATGCAGCAGCCTCAAGTGGCGACTGGATCCGGTACTGACTCAGACAGTGACGACTCTGTCCCAGAGCTGGCGGAACAGGACTCCGCACAGGCACAGGCACAGCAGGCTCAGCTGGTAGCAGCTGCTGAGATTGATGAAGAACCCGTCAGCAAAGCCAAACAGAGCCGGAGTGAAAAGAAGGCACGAGAAGCAATGTCAAAGCTCGGTCTCAGGCAGGTAACGGGGGTCACACGAGTCACGATTCGCAAGTCACAGAACATCTTGTTCGTCATTACCAAACCAGACGTCTACAAGAGTCTCGCGTCAGACACATACATCGTCTTTGGTGGAGCTAAGATCGGAGATCTTTC ] [+] EMBL FR0055371 [ AAGCCACAGAAACTGTCCCTGTCACCGAGCAGGAGATGCAGCAGCCTCAAGTGGCGACTGGGTCCGGAACTGAATCAGACAGTGACGACTCTGTCCCAGAGCTGGAGGAACAGGACTCCGCACAGACACAGACACAGCAGGCTCAGCTGGCAGCAGCTGCTGAGATTGATGAAGAACCCGTCAGCAAAGCCAAACAGAGCCGGAGTGAAAAGAATGCACGAGAAGCAATGTCAAAGCTCGGTCTCAGACAGGTAACGGGGGTCACACGAGTCACGATTCGCAAGTCAAGGAACATCTTGTTCGTCATTACCAAACCAGACGTCTACAAGAGTCCCGCGGCAGACACATACATCGACTTTGGTGAAGCTAAGATCGAGGATCTTTCCCAGCAAGCTCAGCTGGGTGCGGCAG ] [+] EMBL FR0056948 [ CATCTTGTTCGTCATTACCAAACCAGACGTCTACAAGAGTCCCGCGTCAGACACATACATCGTCTTTGGTGAAGCTAAGATCGAAGATCTTTCCCAGCAAGCTCAGCTGGCTGCGGCAGAGAAGTTCAAGGTCCAGGGAGAAGCTGTATCAAGCATCCAGGAAAACACACAGACGCCAACAGTACAGGAGGAGAGCGAAGAAGAGGAGGTTGATGAGACCGGCGTTGAGGTCAAGGACATCGAACTGGTCATGTCACAAGCCAACGTGTCACGGGCGAAGGCAATACGCGCCCTGAAGAACAACAACAACGACATCGTCAACGCCATCATGGAATTGACGATGTAGGGGGACTCTGGAAGAGTCGGGGTTGAAGAAAGGTTGCTGATTTAAGCTCATTTATACAATTTATTATACCTGAGGTGGGAATAA] consensusID : consensus_2206#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 393 fasta sequence [CAGAAACTGTCCCTGTCACCGAGCAGGAGATGCAGCAGCCTCAAGTGGAGACTGTCAACAGGGCAGTCTCACATGGACAACCTTTAGAATCCTCTGATAGCCAGGGGAGTAGCTCTCTGAAAGAAGTTAGCATTCAGGCTACCAGTGACCAACCATGTGGTGTCCCTGATGCTCAAGAAAGTCCCGAGAAAGCTGAAGATATCGAGTCACCTGTTGTGCAGCAGGAGGCAACAGCTGACCCAGTAGGGTGTTCTACTGATCTGACTGTTCCTGGCAGCTGTGAGCCTCAAGCTAATGAAAAAAATGTGCTAACTACAGAGGCACATGTACATGAAAACAAGGAAGTGGCCCTCCAAGACACGGAGATTCCGGATGGGATGATCTCTGGAGGAA] [+] EMBL FR0063046 [CAGAAACTGTCCCTGTCACCGAGCAGGAGATGCAGCAGCCTCAAGTGGAGACTGTCAACAGGGCAGTCTCACATGGACAACCTTTAGAATCCTCTGATAGCCAGGGGAGTAGCTCTCTGAAAGAAGTTAGCATTCAGGCTACCAGTGACCAACCATGTGGTGTCCCTGATGCTCAAGAAAGTCCCGAGAAAGCTGAAGATATCGAGTCACCTGTTGTGCAGCAGGAGGCAACAGCTGACCCAGTAGGGTGTTCTACTGATCTGACTGTTCCTGGCAGCTGTGAGCCTCAAGCTAATGAAAAAAATGTGCTAACTACAGAGGCACATGTACATGAAAACAAGGAAGTGGCCCTCCAAGACACGGAGATTCCGGATGGGATGATCTCTGGAGGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2206#0 CGCAACCATGCCCGGTGAAGCCACAGAAACTGTCCCTGTCACCGAGCAGGAGATGCAGCA 60 consensus_2206#1 -----------------------CAGAAACTGTCCCTGTCACCGAGCAGGAGATGCAGCA 37 ************************************* consensus_2206#0 GCCTCAAGTGGCGACTGGGTCCGGAACTGAATCAGACAGTGACGACTCTG-------TCC 113 consensus_2206#1 GCCTCAAGTGGAGACTGTCAACAGGGC--AGTCTCACATGGACAACCTTTAGAATCCTCT 95 *********** ***** * * * * ** *** *** ** * ** consensus_2206#0 CAGAGCTGGAGGAACAGGACTCCGCACAGGCACAGGCACAGCAGGCT--CAGCTGGCAGC 171 consensus_2206#1 GATAGCCAGGGGAGTAGCTCTCTG-AAAGAAGTTAGCATT-CAGGCTACCAGTGACCAAC 153 * *** * *** ** *** * * ** *** ****** *** ** * consensus_2206#0 AGC-TGCTGAGATTGATG---AAGAACCCGTCAGCAAAGCCAAACAGAGCCGGAGTGAAA 227 consensus_2206#1 CATGTGGTGTCCCTGATGCTCAAGAAAGTCCCGAGAAAGCTGAAGATATCGAGTCACCTG 213 ** ** ***** ***** * ***** ** * * * * consensus_2206#0 AGAAGGCACGAGAAGCAA----TGTCAAAGCTCGGTCTCAGGCAGGTAACGGGGGTCACA 283 consensus_2206#1 TTGTGCAGCAGGAGGCAACAGCTGACCCAGTAGGGTGTTCTACTGATCTGACTGTTCCTG 273 * * ** **** ** * ** *** * * * * * ** consensus_2206#0 CGAGTCACGATTCGCAAGTCAAGGAACATCTTGTTCGTCATTACCAAACCAGACGTCTAC 343 consensus_2206#1 GCAGCTGTGAGCCTCAAGCTAATGAAAAAAATGTGC-TAACTACAGAGGCACATGTACAT 332 ** ** * **** ** *** * *** * * * *** * ** * ** * consensus_2206#0 AAGAGTCCCGCGTCAGACACATACATCGTCTTTGGTGAAGCTAAGATCGAAGATCTTTCC 403 consensus_2206#1 GAAAACAAGGAAGTGGCCCTCCAAGACAC----GGAGATTCCGGATGGGATGATCTCTGG 388 * * * * * * * ** ** * ** ***** * consensus_2206#0 CAGCAAGCTCAGCTGGGTGCGGCAGAGAAGTTCAAGGTCCAGGGAGAAGCTGTATCAAGC 463 consensus_2206#1 AGGAA------------------------------------------------------- 393 * * consensus_2206#0 ATCCAGGAAAACACACAGACGCCAACAGTACAGGAGGAGAGCGAAGAAGAGGAGGTTGAT 523 consensus_2206#1 ------------------------------------------------------------ consensus_2206#0 GAGACCGGCGTTGAGGTCAAGGACATCGAACTGGTCATGTCACAAGCCAACGTGTCACGG 583 consensus_2206#1 ------------------------------------------------------------ consensus_2206#0 GCGAAGGCAATACGCGCCCTGAAGAACAACAACAACGACATCGTCAACGCCATCATGGAA 643 consensus_2206#1 ------------------------------------------------------------ consensus_2206#0 TTGACGATGTAGGGGGACTCTGGAAGAGTCGGGGTTGAAGAAAGGTTGCTGATTTAAGCT 703 consensus_2206#1 ------------------------------------------------------------ consensus_2206#0 CATTTATACAATTTATTATACCTGAGGTGGGAATAA 739 consensus_2206#1 ------------------------------------ |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |