These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2214#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 540 fasta sequence [GGAAAATGTGATTTTATCTATCTCTGCTATGAGACTTATGTGTGCAAGAAAGCGAGAAAGGCTAGTCGGTCTTTGTCCCCTGGCTCGGGCGGAAACTACAAACGTTACAATCGGTGAGGATTCAAATATCAACTATCGACACTTGTGTTTATTTGAGAGATGTCCACCCCGGATCCCCCTATGGGAGGGACACCTCGTCCTGGACCCTCCCCAGGTCCAGGAACGTCTCCAGGTGGCATAGTAGGGCCAAGTCCAGGTCCCTCTCCTAGCTCGGCCCACAACATGATGGGCCCAAGCCCTGTACCTCCTGGATCTGGACACCCCCACCCTCCGCAGGCACCAACAGGATATTCTCAAGATCCAATGCACCAGATGCACAAAATGAAAGGCATAGGCATTAGATCCAGTGGGCATAGTGGGATGGGACCACCTCCAAGTCCAATGGACCAACATTCACAAGGTTACCCATCTCCCGTGGGAGAACATGCCCCTAGCCCTGTCCCAGCCAACGGGCCTCTGTCTGTTCCTATGATGTCAGGA] [+] EMBL CA332764 [GGAAAATGTGATTTTATCTATCTCTGCTATGAGACTTATGTGTGCAAGCAAGCACTAAAATTTAGTCGGTCTTTGT TTCTGGCTCGGGCGAAAACTACAAACGTTACAATCGGTGAGGATTCAAATATCAACTATCGACACTTGTGTTTATTTGAGAGATGTCCACCCCGGATCCCCCTATGGGAGGGACACCTCGTCCTGGACCCTCCCCAGGTCCAGGACCGTCTCCAGGTGGCATAGTAGGGCCAAGTCCAGGTCCCTCTCCTAGCTCGGCCCACAACATGATGGGCCCAAGCCCTGTACCTCCTGGATCTGGACACCCCCACCCTCCGCAGGCACCAACAGGATATTCTCAAGATCCAATGCACCAGATGCACAAAATGAAAGGCATAGGCATTAGATCCAGTGGGCATAGTGGGATGGGACCACCTCCAAGTCCAATGGACCAACATTCACAAGGTTACCCATCTCCCGTGGGAGAACATGCCCCTAGCCCTGTCCCAGCCAACGGGCCTCTGTCTGTTCCTATGATGTCAGGA] [+] EMBL CA333326 [ aAAACCGAGCAAGGCTCGTCGGTCTTTGTCCCCTGGCTCGGGCGGAAACTACAAACGTTACAATCGGTGAGGATTCAAATATCAACTATCGACACTTGTGTTTATTTGAGAGATGTCCACCCCGGATCCCCCTATGGGAGGGACACCTCGTCCTGGACCCTCCCCAGGTCCAGGAACa ] consensusID : consensus_2214#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 440 fasta sequence [CGTTACAATCGGTGAGGATTCAAATATCAACTATCGACACTTGTGTTTATTTGAGAGATGTCCACCCCGGATCCCCCTATGGGAGGGACACCTCGTCCTGGACCCTCCCCAGGTCCAGGACCATCTCCAGGTGGCATAGTAGGGCCAAGTCCAGGTCCCTCTCCTAGCTCGGCCCACAACATGATGGGCCCAAGCCCTGTACCTCCTGGATCTGGACACCCCCACCCTCCGCAGGCACCAACAGGATATTCTCAAGATCCAATGCACCAGATGCACAAACCTATCGATGCCATGAATGAGAAGGGAATGACTGATGATTCCCGTTATACGCAGATGAAAGGCATAGGCATTAGATCCAGTGGGCATAGTGGGATGGGACCACCTCCAAGTCCAATGGACCAACATTCACAAGGTTACCCATCTCCCGTGGGAGAACATGC] [+] EMBL CA590645 [CGTTACAATCGGTGAGGATTCAAATATCAACTATCGACACTTGTGTTTATTTGAGAGATGTCCACCCCGGATCCCCCTATGGGAGGGACACCTCGTCCTGGACCCTCCCCAGGTCCAGGACCATCTCCAGGTGGCATAGTAGGGCCAAGTCCAGGTCCCTCTCCTAGCTCGGCCCACAACATGATGGGCCCAAGCCCTGTACCTCCTGGATCTGGACACCCCCACCCTCCGCAGGCACCAACAGGATATTCTCAAGATCCAATGCACCAGATGCACAAACCTATCGATGCCATGAATGAGAAGGGAATGACTGATGATTCCCGTTATACGCAGATGAAAGGCATAGGCATTAGATCCAGTGGGCATAGTGGGATGGGACCACCTCCAAGTCCAATGGACCAACATTCACAAGGTTACCCATCTCCCGTGGGAGAACATGC] consensusID : consensus_2214#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 331 fasta sequence [CGGGACAATCGGTGAGGATTCAAATATCAACTATCGACACTTGTGTTTATTTGAGAGATGTCCACCCCGGATCCCCCTATGGGAGGGACACCCCCACCCTCCGCAGGCACCAACAGGATATTCTCAAGATCCAATGCACCAGATGCACAAACCTATCGATGCCATGAATGAGAAGGGAATGACTGATGATTCCCGTTATACGCAGATGAAAGGCATAGGCATTAGATCCAGTGGGCATAGTGGGATGGGACCACCTTCAAGTCCAATGGACCAACATTCACAAGGGTACCCATCTCCCGTGGGAGAACATGCCCCTAGCCCTGTCCCACCC] [+] EMBL FR0061327 [CGGGACAATCGGTGAGGATTCAAATATCAACTATCGACACTTGTGTTTATTTGAGAGATGTCCACCCCGGATCCCCCTATGGGAGGGACACCCCCACCCTCCGCAGGCACCAACAGGATATTCTCAAGATCCAATGCACCAGATGCACAAACCTATCGATGCCATGAATGAGAAGGGAATGACTGATGATTCCCGTTATACGCAGATGAAAGGCATAGGCATTAGATCCAGTGGGCATAGTGGGATGGGACCACCTTCAAGTCCAATGGACCAACATTCACAAGGGTACCCATCTCCCGTGGGAGAACATGCCCCTAGCCCTGTCCCACCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2214#0 GGAAAATGTGATTTTATCTATCTCTGCTATGAGACTTATGTGTGCAAGAAAGCGAGAAAG 60 consensus_2214#1 ------------------------------------------------------------ consensus_2214#2 ------------------------------------------------------------ consensus_2214#0 GCTAGTCGGTCTTTGTCCCCTGGCTCGGGCGGAAACTACAAACGTTACAATCGGTGAGGA 120 consensus_2214#1 ------------------------------------------CGTTACAATCGGTGAGGA 18 consensus_2214#2 ------------------------------------------------------------ consensus_2214#0 TTCAAATATCAACTATCGACACTTGTGTTTATTTGAGAGATGTCCACCCCGGATCCCCCT 180 consensus_2214#1 TTCAAATATCAACTATCGACACTTGTGTTTATTTGAGAGATGTCCACCCCGGATCCCCCT 78 consensus_2214#2 ------------------------------------------------------------ consensus_2214#0 ATGGGAGGGACACCTCGTCCTGGACCCTCCCCAGGTCCAGGAACGTCTCCAGGTGGCATA 240 consensus_2214#1 ATGGGAGGGACACCTCGTCCTGGACCCTCCCCAGGTCCAGGACCATCTCCAGGTGGCATA 138 consensus_2214#2 -------------------------------------CGGGACAATC---GGTGAGGATT 20 * *** ** * * ** consensus_2214#0 GTAGGGCCAAGTCCAGGTCCCTCTCCTAGCTCGGCCCACAACATGATGGGCCCAAGCCCT 300 consensus_2214#1 GTAGGGCCAAGTCCAGGTCCCTCTCCTAGCTCGGCCCACAACATGATGGGCCCAAGCCCT 198 consensus_2214#2 CAAATATCAACTATCGACACTTGTGTTTATTTGA-----GAGATGTCCACCCCGGATCCC 75 * *** * * * * * * * * * *** *** ** consensus_2214#0 GTACCTCCTGGATCTGGACACCCCCACCCTCCGCAGGCACCAACAGGATATTCTCAAGAT 360 consensus_2214#1 GTACCTCCTGGATCTGGACACCCCCACCCTCCGCAGGCACCAACAGGATATTCTCAAGAT 258 consensus_2214#2 ---CCTATGGGAG--GGACACCCCCACCCTCCGCAGGCACCAACAGGATATTCTCAAGAT 130 *** *** ********************************************* consensus_2214#0 CCAATGCACCAGATGCACAAA--------------------------------------- 381 consensus_2214#1 CCAATGCACCAGATGCACAAACCTATCGATGCCATGAATGAGAAGGGAATGACTGATGAT 318 consensus_2214#2 CCAATGCACCAGATGCACAAACCTATCGATGCCATGAATGAGAAGGGAATGACTGATGAT 190 ********************* consensus_2214#0 ---------------ATGAAAGGCATAGGCATTAGATCCAGTGGGCATAGTGGGATGGGA 426 consensus_2214#1 TCCCGTTATACGCAGATGAAAGGCATAGGCATTAGATCCAGTGGGCATAGTGGGATGGGA 378 consensus_2214#2 TCCCGTTATACGCAGATGAAAGGCATAGGCATTAGATCCAGTGGGCATAGTGGGATGGGA 250 ********************************************* consensus_2214#0 CCACCTCCAAGTCCAATGGACCAACATTCACAAGGTTACCCATCTCCCGTGGGAGAACAT 486 consensus_2214#1 CCACCTCCAAGTCCAATGGACCAACATTCACAAGGTTACCCATCTCCCGTGGGAGAACAT 438 consensus_2214#2 CCACCTTCAAGTCCAATGGACCAACATTCACAAGGGTACCCATCTCCCGTGGGAGAACAT 310 ****** **************************** ************************ consensus_2214#0 GCCCCTAGCCCTGTCCCAGCCAACGGGCCTCTGTCTGTTCCTATGATGTCAGGA 540 consensus_2214#1 GC---------------------------------------------------- 440 consensus_2214#2 GCCCCTAGCCCTGTCCCACCC--------------------------------- 331 ** |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |