These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2262#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 355 fasta sequence [TGACCTTCCTTCCACTGCGATACTCTGAAAGATGGCCGGACGGGTGTTTGCTAATTGGTGGAGTAAGGTGGGCCCTTATTACACAAAGGCGTACCAGGAGATGTGGGTCGGCATCGGCCTCATCGGGTTATTCTACTACAAACTCTCCTATGGCGGCAAAAAGGCTGTGAAGAGCCCGCCGGCCCACTGAGGACCCGTCCTGCCCGCCACCCTTCCGCCT---GCTGTCAGA-TAACACCCCAGCTGTTCCTGCAGTCCTCATATTTTGCTTTGTGTTAATATGGAAACAATAAAGACGCTGTCCCACACTTAAAAACATAAAAAAAAAACTCGAGGGGGGGCCCGGTCCCCAGTTTTT] [+] EMBL CA330036 [TGACCTTCCTTCCACTGCGATACTCTGAAAGATGGCCGGACGGGTGTTTGCTAATTGGTGGAGTAAGGTGGGCCCTTATTACACAAAGGCGTACCAGGAGATGTGGGTCGGCATCGGCCTCATCGGGTTATTCTACTACAAACTCTCCTATGGCGGCAAAAAGGCTGTGAAGAGCCCGCCGGCCCACTGAGGACCCGTCCTGCCCGCCACCCTTCCGCCT GCTGTCAGA TAACACCCCAGCTGTTCCTGCAGTCCTCATATTTTGCTTTGTGTTAATATGGAAACAATAAAGACGCTGTCCCACA ] [+] EMBL FR0055178 [ ACTCTGAAAGATGGCCGGACGGGTGTTTGCTAATTGGTGGAGTAAGGTGGGCCCTTATTACACAAAGGCGTACCAGGAGATGTGGGTCGGCATCGGCCTCATCGGGTTATTCTACTACAAACTCTCCTATGGCGGCAAAAAGGCTGTGAAGAGCCCGCCGGCCCACTGAGGACCCGTCCTGCCCGCCACCCTTCCGCCT GCTGTCAGA TAACACCCCAGCTGTTCCTGCAGTCCTCATATTTTGCTTTGTGTTAATATGGAAACAATAAAGACGCTGTCCCACACTTAAAAACATAAAAAAAAAACTCGAGGGGGGGCCCGGTCCCCAGTTTTT] [+] EMBL FR0055843 [ GACGGTTGTTTGCTAATTGGTGGAGTAAGGTGGGCCCTTATTACACAAAGGCGTACCAGGAGATGTGGGTCGGCATCGGCCTCATCGGGTTATTCTACTACAAACTCTCCTATGGCGGCAGAAAGGCTGTGAAGAGCCCGCCGGCCCACTGAGGACCCGCCCTGCCCGCCACCCGTTCCGCTCTGGCTGTCAGAGTAGCACCCCAGCTGTTCCTGCAGTCCTCATATTTTGCTTTGTGTTAATATGGGGACAATAAAGA ] [+] EMBL CA845355 [ GCCCACTGAGGACCCGTCCTGCCCGCCACCCTTCCGCCT GCTGTCAGA TAACACCCCAGCTGTTCCTGCAGTCCTCATATTTTGCTTTGTGTTAATATGGAAACAATAAAGACGCTGTCCCACA ] consensusID : consensus_2262#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 237 fasta sequence [GGTCGGCATCGGCCTCATCGGGTTATTCTACTACAAACTCTCCTATGGCGGCAAAAAGGATGTGAAGAGCCCGCCGGACCACTGAGGACCCGTCCTGCCCGCCACCCTTCCGCCTGCTGTCAGATAACACCCCAGCTGTTCCTGCAGTCCTCATATTTTGCTTTGTGTTAATATGGAAACAATAAAGACGCTGTCCCACAAAAGATAGCCAAGAGTAAAAAAAGGAAAAAACGCACA] [+] EMBL FR0055800 [GGTCGGCATCGGCCTCATCGGGTTATTCTACTACAAACTCTCCTATGGCGGCAAAAAGGATGTGAAGAGCCCGCCGGACCACTGAGGACCCGTCCTGCCCGCCACCCTTCCGCCTGCTGTCAGATAACACCCCAGCTGTTCCTGCAGTCCTCATATTTTGCTTTGTGTTAATATGGAAACAATAAAGACGCTGTCCCACAAAAGATAGCCAAGAGTAAAAAAAGGAAAAAACGCACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2262#0 TGACCTTCCTTCCACTGCGATACTCTGAAAGATGGCCGGACGGGTGTTTGCTAATTGGTG 60 consensus_2262#1 ------------------------------------------------------------ consensus_2262#0 GAGTAAGGTGGGCCCTTATTACACAAAGGCGTACCAGGAGATGTGGGTCGGCATCGGCCT 120 consensus_2262#1 ---------------------------------------------GGTCGGCATCGGCCT 15 *************** consensus_2262#0 CATCGGGTTATTCTACTACAAACTCTCCTATGGCGGCAAAAAGGCTGTGAAGAGCCCGCC 180 consensus_2262#1 CATCGGGTTATTCTACTACAAACTCTCCTATGGCGGCAAAAAGGATGTGAAGAGCCCGCC 75 ******************************************** *************** consensus_2262#0 GGCCCACTGAGGACCCGTCCTGCCCGCCACCCTTCCGCCTGCTGTCAGATAACACCCCAG 240 consensus_2262#1 GGACCACTGAGGACCCGTCCTGCCCGCCACCCTTCCGCCTGCTGTCAGATAACACCCCAG 135 ** ********************************************************* consensus_2262#0 CTGTTCCTGCAGTCCTCATATTTTGCTTTGTGTTAATATGGAAACAATAAAGACGCTGTC 300 consensus_2262#1 CTGTTCCTGCAGTCCTCATATTTTGCTTTGTGTTAATATGGAAACAATAAAGACGCTGTC 195 ************************************************************ consensus_2262#0 CCACACTTAAAAACATAAAAAAAAAACTCGAGGGGGGGCCCGGTCCCCAGTTTTT 355 consensus_2262#1 CCACAAAAGATAGCCAAGAGTAAAAAAAGGAAAAAACGCACA------------- 237 ***** * * * * * ***** ** ** * |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |