These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2264#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 608 fasta sequence [GCTGTTTGTGTCTCTCTCTGTTGCAGCGTTTCCATCAGGTGAGCAGAACAAACCTTTGAGTTCTGAAGAGATGAAGTGGAATTTGACTGATCCGCTCCGTCTTCCAGCTCTCTCTGCGTCCCTGAACTCTGCAGAGGAAGATGGGGTAGCAGCTCAGCACGATGGCCTGACCGAGCTCCAGAAGATAGATCAGATGGAGTTCGAGGCCGCTCAAAGGAACGAAGCCGCCCACAAGAACGTCACAGAGGAACAGAAAGACGACAGCGGCCATCATCACGATGAGCAGAGTGCAGCTGAAGGCGACGGCAAAGAGCAGAGAAGCGGAAATTCCCACGCTCCTGAAGACTCCGAATCCTCAGAAGAGACAGAAGGGAGACAGAGGAGGGATGAAATAACCGTGGATTCAACCAAGGAGCGAGATGGTCAGTGCAGCACCACGGGGCCGTCTGTCAGGGGCGGAGGCGGCCCCGATGATGCAGGGGCCCGGGGAGAGCTGCAGTAGATGCTCCTCGTTAATGAGAAATAGTTAGTTATGTGTTGATGCTTCAGTAGAATGAGAAGATCCAAAGGAGCCTCTAACAGCAGCATCTTTTGTCTGACGTGTACTT] [+] EMBL CA333365 [GCTGTTTGTGTCTCTCTCTGTTGCAGCGTTTCCATCAGGTGAGCAGAACAAACCTTTGAGTTCTGAAGAGATGAAGTGGAATTTGACTGATCCGCTCCGTCTTCCAGCTCTCTCTGCGTCCCTGAACTCTGCAGAGGAAGATGGGGTAGCAGCTCAGCACGATGGCCTGACCGAGCTCCAGAAGATAGATCAGATGGAGTTCGAGGCCGCTCAAAGGAACGAAGCCGCCCACAAGAACGTCACAGAGGAACAGAAAGACGACAGCGGCCATCATCACGATGAGCAGAGTGCAGCTGAAGGCGACGGCAAAGAGCAGAGAAGCGGAAATTCCCACGCTCCTGAAGACTCCGAATCCTCAGAAGAGACAGAAGGGAGACAGAGGAGGGATGAAATAACCGTGGATTCAACCAAGGAGCGAGATGGTCAGTGCAGCACCACGGGGCCGTCTGTCAGGGGCGGAGGCGGCCCCGATGATGCAGGGGCCCGGGGAGAGCTGCAGTAGATGCTCCTCGTTAATGAGAAATAGTTAGTTATGTGTTGATGCTTCAGTAGAATGAGAAGATCCAAAGGAGCCTCTAACAGCAGCATCTTTTGTCTGACGTGTACTT] consensusID : consensus_2264#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 607 fasta sequence [GGGACCTTCAGAACCGCAAGATGAAACTTCCAGCGCTGCTGATTTGTGTCTCTCTCTGTTGCAGCGTTTCCATCAGCTCTCTCTGCGTCCCTGAACTCTGCAGAGGAAGATGGGGTAGCAGCTCAGCACGATGGNCTGACCGAGCTCGAGAAGATAGATCAGATGGAGTTCGAGGACGCTCAAAGGAACGAAGGCGCCCACAAGGAACGTCACAGAGGAACAGAAAGACGACAGCGGGCATCATCACGGTGAGGATGAGCAGAGTGGAGCTGAAGGCGACGGCANAGAGCAGAGAAGCGGAAATTCCCACGCTCCTGAAGACTCCGAATCCTCAGAAGAGACAGAAGGGAGACAGAGGAGGGATGAAATAACCGTGGATTCAACCAAGGAGCGAGATGGTCAGTGCAGCACCACGGGGCCGTCTGTCAGGGGCGGAGGCGGCCCCGATGATGCAGGGGCCCGGGGAGAGCTGCAGTAGATGCTCCTCGTTAATGAGAAATAGTTAGTTATGTGTTGATGCTTCAGTAGAATGAGAAGATCCAAAGGAGCCTCTAACAGCAGCATCTTTTGTCTGACGTGTACTTTAAAACACCATAAAGATTTACAC] [+] EMBL CA330761 [GGGACCTTCAGAACCGCAAGATGAAACTTCCAGCGCTGCTG TTTGTGTCTCTCTCTGTTGCAGCGTTTCCATCAGCTCTCTCTGCGTCCCTGAACTCTGCAGAGGAAGATGGGGTAGCAGCTCAGCACGATGGCCTGACCGAGCTCCAGAAGATAGATCAGATGGAGTTCGAGGCCGCTCAAAGGAACGAAGCCGCCCACAA GAACGTCACAGAGGAACAGAAAGACGACAGCGGCCATCATCACGGTGAGGATGAGCAGAGTGCAGCTGAAGGCGACGGCAAAGAGCAGAGAAGCGGAAATTCCCACGCTCCTGAAGACTCCGAATCCTCAGAAGAGACAGAAGGGAGACAGAGGAGGGATGAAATAACCGTGGATTCAACCAAGGAGCGAGATGGTCAGTGCAGCACCACGGGGCCGTCTGTCAGGGGCGGAGGCGGCCCCGATGATGCAGGGGCCCGGGGAGAGCTGCAGTAGATGCTCCTCGTTAATGAGAAATAGTTAGTTATGTGTTGATGCTTCAGTAGAATGAGAAGATCCAAAGGAGCCTCTAACAGCAGCATCTTTTG ] [+] EMBL FR0055478 [ AACTTCCAGCGCTGCTGATTTGTGTCTCTCTCTGTTGCAGCGTTTCCATCAGCTCTCTCTGCGTCCCTGAACTCTGCAGAGGAAGATGGGGTAGCAGCTCAGCACGATGGNCTGACCGAGCTCGAGAAGATAGATCAGATGGAGTTCGAGGACGCTCAAAGGAACGAAGGCGTCCACAAGGACCGTCACAGAGGAACAGAAAGACGACAGCGGGCATCATCACGGTGAGGATGAGCAGAGTGGAGCTGAAGGCGACGGCANAGAGCAGAGAAGCGGAACTTCCCACGCT ] [+] EMBL CA330016 [ CGATGATGCAGGGGCCCGGGGAGAGCTGCAGTAGATGCTCCTCGTTAATGAGAAATAGTTAGTTATGTGTTGATGCTTCAGTAGAATGAGAAGATCCAAAGGAGCCTCTAACAGCAGCATCTTTTGTCTGACGTGTACTTTAAAACACCATAAAGATTTACAC] [+] EMBL CA333497 [ CCGGGGAGAGCTGCAGTAGATGCTCCTCGTTAATGAGAAATAGTTAGTTATGTGTTGATGCTTCAGTAGAATGAGAAGATCCAAAGGAGCCTCTAACAGCAGCATCTTTTGTCTGACGTGTACTTTAAAACACCATAAAGATTTACA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2264#0 GCTGTTTGTGTCTCTCTCTGTTGCAGCGTTTCCATCAGGTGAGCAGAACAAACCTTTGAG 60 consensus_2264#1 ---------------------------GGGACCTTCAGAACCGCAAGATGAAACTTCCAG 33 * ** **** *** * ** *** ** consensus_2264#0 TTCTGAAGAGATGAAGTGGAATTTGACTGATCCGCTCCGTCTTCCAGCTCTCTCTGCGTC 120 consensus_2264#1 CGCTGCTGATTTGTGTC----TCTCTCTGTTGCAGCGTTTCCATCAGCTCTCTCTGCGTC 89 *** ** ** * * *** * * ** **************** consensus_2264#0 CCTGAACTCTGCAGAGGAAGATGGGGTAGCAGCTCAGCACGATGGCCTGACCGAGCTCCA 180 consensus_2264#1 CCTGAACTCTGCAGAGGAAGATGGGGTAGCAGCTCAGCACGATGGNCTGACCGAGCTCGA 149 ********************************************* ************ * consensus_2264#0 GAAGATAGATCAGATGGAGTTCGAGGCCGCTCAAAGGAACGAAGCCGCCCACAAG-AACG 239 consensus_2264#1 GAAGATAGATCAGATGGAGTTCGAGGACGCTCAAAGGAACGAAGGCGCCCACAAGGAACG 209 ************************** ***************** ********** **** consensus_2264#0 TCACAGAGGAACAGAAAGACGACAGCGGCCATCATCACG------ATGAGCAGAGTGCAG 293 consensus_2264#1 TCACAGAGGAACAGAAAGACGACAGCGGGCATCATCACGGTGAGGATGAGCAGAGTGGAG 269 **************************** ********** ************ ** consensus_2264#0 CTGAAGGCGACGGCAAAGAGCAGAGAAGCGGAAATTCCCACGCTCCTGAAGACTCCGAAT 353 consensus_2264#1 CTGAAGGCGACGGCANAGAGCAGAGAAGCGGAAATTCCCACGCTCCTGAAGACTCCGAAT 329 *************** ******************************************** consensus_2264#0 CCTCAGAAGAGACAGAAGGGAGACAGAGGAGGGATGAAATAACCGTGGATTCAACCAAGG 413 consensus_2264#1 CCTCAGAAGAGACAGAAGGGAGACAGAGGAGGGATGAAATAACCGTGGATTCAACCAAGG 389 ************************************************************ consensus_2264#0 AGCGAGATGGTCAGTGCAGCACCACGGGGCCGTCTGTCAGGGGCGGAGGCGGCCCCGATG 473 consensus_2264#1 AGCGAGATGGTCAGTGCAGCACCACGGGGCCGTCTGTCAGGGGCGGAGGCGGCCCCGATG 449 ************************************************************ consensus_2264#0 ATGCAGGGGCCCGGGGAGAGCTGCAGTAGATGCTCCTCGTTAATGAGAAATAGTTAGTTA 533 consensus_2264#1 ATGCAGGGGCCCGGGGAGAGCTGCAGTAGATGCTCCTCGTTAATGAGAAATAGTTAGTTA 509 ************************************************************ consensus_2264#0 TGTGTTGATGCTTCAGTAGAATGAGAAGATCCAAAGGAGCCTCTAACAGCAGCATCTTTT 593 consensus_2264#1 TGTGTTGATGCTTCAGTAGAATGAGAAGATCCAAAGGAGCCTCTAACAGCAGCATCTTTT 569 ************************************************************ consensus_2264#0 GTCTGACGTGTACTT----------------------- 608 consensus_2264#1 GTCTGACGTGTACTTTAAAACACCATAAAGATTTACAC 607 *************** |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |