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Takifugu rubripes
cluster # 2264 cluster # 2264       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2264#0 length = 608 sequences # 1  
consensus_2264#1 length = 607 sequences # 4  

consensusID : consensus_2264#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 608
fasta sequence
                              [GCTGTTTGTGTCTCTCTCTGTTGCAGCGTTTCCATCAGGTGAGCAGAACAAACCTTTGAGTTCTGAAGAGATGAAGTGGAATTTGACTGATCCGCTCCGTCTTCCAGCTCTCTCTGCGTCCCTGAACTCTGCAGAGGAAGATGGGGTAGCAGCTCAGCACGATGGCCTGACCGAGCTCCAGAAGATAGATCAGATGGAGTTCGAGGCCGCTCAAAGGAACGAAGCCGCCCACAAGAACGTCACAGAGGAACAGAAAGACGACAGCGGCCATCATCACGATGAGCAGAGTGCAGCTGAAGGCGACGGCAAAGAGCAGAGAAGCGGAAATTCCCACGCTCCTGAAGACTCCGAATCCTCAGAAGAGACAGAAGGGAGACAGAGGAGGGATGAAATAACCGTGGATTCAACCAAGGAGCGAGATGGTCAGTGCAGCACCACGGGGCCGTCTGTCAGGGGCGGAGGCGGCCCCGATGATGCAGGGGCCCGGGGAGAGCTGCAGTAGATGCTCCTCGTTAATGAGAAATAGTTAGTTATGTGTTGATGCTTCAGTAGAATGAGAAGATCCAAAGGAGCCTCTAACAGCAGCATCTTTTGTCTGACGTGTACTT]

[+] EMBL CA333365             [GCTGTTTGTGTCTCTCTCTGTTGCAGCGTTTCCATCAGGTGAGCAGAACAAACCTTTGAGTTCTGAAGAGATGAAGTGGAATTTGACTGATCCGCTCCGTCTTCCAGCTCTCTCTGCGTCCCTGAACTCTGCAGAGGAAGATGGGGTAGCAGCTCAGCACGATGGCCTGACCGAGCTCCAGAAGATAGATCAGATGGAGTTCGAGGCCGCTCAAAGGAACGAAGCCGCCCACAAGAACGTCACAGAGGAACAGAAAGACGACAGCGGCCATCATCACGATGAGCAGAGTGCAGCTGAAGGCGACGGCAAAGAGCAGAGAAGCGGAAATTCCCACGCTCCTGAAGACTCCGAATCCTCAGAAGAGACAGAAGGGAGACAGAGGAGGGATGAAATAACCGTGGATTCAACCAAGGAGCGAGATGGTCAGTGCAGCACCACGGGGCCGTCTGTCAGGGGCGGAGGCGGCCCCGATGATGCAGGGGCCCGGGGAGAGCTGCAGTAGATGCTCCTCGTTAATGAGAAATAGTTAGTTATGTGTTGATGCTTCAGTAGAATGAGAAGATCCAAAGGAGCCTCTAACAGCAGCATCTTTTGTCTGACGTGTACTT]


>consensus_2264#0 GCTGTTTGTGTCTCTCTCTGTTGCAGCGTTTCCATCAGGTGAGCAGAACAAACCTTTGAG TTCTGAAGAGATGAAGTGGAATTTGACTGATCCGCTCCGTCTTCCAGCTCTCTCTGCGTC CCTGAACTCTGCAGAGGAAGATGGGGTAGCAGCTCAGCACGATGGCCTGACCGAGCTCCA GAAGATAGATCAGATGGAGTTCGAGGCCGCTCAAAGGAACGAAGCCGCCCACAAGAACGT CACAGAGGAACAGAAAGACGACAGCGGCCATCATCACGATGAGCAGAGTGCAGCTGAAGG CGACGGCAAAGAGCAGAGAAGCGGAAATTCCCACGCTCCTGAAGACTCCGAATCCTCAGA AGAGACAGAAGGGAGACAGAGGAGGGATGAAATAACCGTGGATTCAACCAAGGAGCGAGA TGGTCAGTGCAGCACCACGGGGCCGTCTGTCAGGGGCGGAGGCGGCCCCGATGATGCAGG GGCCCGGGGAGAGCTGCAGTAGATGCTCCTCGTTAATGAGAAATAGTTAGTTATGTGTTG ATGCTTCAGTAGAATGAGAAGATCCAAAGGAGCCTCTAACAGCAGCATCTTTTGTCTGAC GTGTACTT



consensusID : consensus_2264#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 607
fasta sequence
                              [GGGACCTTCAGAACCGCAAGATGAAACTTCCAGCGCTGCTGATTTGTGTCTCTCTCTGTTGCAGCGTTTCCATCAGCTCTCTCTGCGTCCCTGAACTCTGCAGAGGAAGATGGGGTAGCAGCTCAGCACGATGGNCTGACCGAGCTCGAGAAGATAGATCAGATGGAGTTCGAGGACGCTCAAAGGAACGAAGGCGCCCACAAGGAACGTCACAGAGGAACAGAAAGACGACAGCGGGCATCATCACGGTGAGGATGAGCAGAGTGGAGCTGAAGGCGACGGCANAGAGCAGAGAAGCGGAAATTCCCACGCTCCTGAAGACTCCGAATCCTCAGAAGAGACAGAAGGGAGACAGAGGAGGGATGAAATAACCGTGGATTCAACCAAGGAGCGAGATGGTCAGTGCAGCACCACGGGGCCGTCTGTCAGGGGCGGAGGCGGCCCCGATGATGCAGGGGCCCGGGGAGAGCTGCAGTAGATGCTCCTCGTTAATGAGAAATAGTTAGTTATGTGTTGATGCTTCAGTAGAATGAGAAGATCCAAAGGAGCCTCTAACAGCAGCATCTTTTGTCTGACGTGTACTTTAAAACACCATAAAGATTTACAC]

[+] EMBL CA330761             [GGGACCTTCAGAACCGCAAGATGAAACTTCCAGCGCTGCTG TTTGTGTCTCTCTCTGTTGCAGCGTTTCCATCAGCTCTCTCTGCGTCCCTGAACTCTGCAGAGGAAGATGGGGTAGCAGCTCAGCACGATGGCCTGACCGAGCTCCAGAAGATAGATCAGATGGAGTTCGAGGCCGCTCAAAGGAACGAAGCCGCCCACAA GAACGTCACAGAGGAACAGAAAGACGACAGCGGCCATCATCACGGTGAGGATGAGCAGAGTGCAGCTGAAGGCGACGGCAAAGAGCAGAGAAGCGGAAATTCCCACGCTCCTGAAGACTCCGAATCCTCAGAAGAGACAGAAGGGAGACAGAGGAGGGATGAAATAACCGTGGATTCAACCAAGGAGCGAGATGGTCAGTGCAGCACCACGGGGCCGTCTGTCAGGGGCGGAGGCGGCCCCGATGATGCAGGGGCCCGGGGAGAGCTGCAGTAGATGCTCCTCGTTAATGAGAAATAGTTAGTTATGTGTTGATGCTTCAGTAGAATGAGAAGATCCAAAGGAGCCTCTAACAGCAGCATCTTTTG                                     ]
[+] EMBL FR0055478            [                        AACTTCCAGCGCTGCTGATTTGTGTCTCTCTCTGTTGCAGCGTTTCCATCAGCTCTCTCTGCGTCCCTGAACTCTGCAGAGGAAGATGGGGTAGCAGCTCAGCACGATGGNCTGACCGAGCTCGAGAAGATAGATCAGATGGAGTTCGAGGACGCTCAAAGGAACGAAGGCGTCCACAAGGACCGTCACAGAGGAACAGAAAGACGACAGCGGGCATCATCACGGTGAGGATGAGCAGAGTGGAGCTGAAGGCGACGGCANAGAGCAGAGAAGCGGAACTTCCCACGCT                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CA330016             [                                                                                                                                                                                                                                                                                                                                                                                                                                                            CGATGATGCAGGGGCCCGGGGAGAGCTGCAGTAGATGCTCCTCGTTAATGAGAAATAGTTAGTTATGTGTTGATGCTTCAGTAGAATGAGAAGATCCAAAGGAGCCTCTAACAGCAGCATCTTTTGTCTGACGTGTACTTTAAAACACCATAAAGATTTACAC]
[+] EMBL CA333497             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CCGGGGAGAGCTGCAGTAGATGCTCCTCGTTAATGAGAAATAGTTAGTTATGTGTTGATGCTTCAGTAGAATGAGAAGATCCAAAGGAGCCTCTAACAGCAGCATCTTTTGTCTGACGTGTACTTTAAAACACCATAAAGATTTACA ]


>consensus_2264#1 GGGACCTTCAGAACCGCAAGATGAAACTTCCAGCGCTGCTGATTTGTGTCTCTCTCTGTT GCAGCGTTTCCATCAGCTCTCTCTGCGTCCCTGAACTCTGCAGAGGAAGATGGGGTAGCA GCTCAGCACGATGGNCTGACCGAGCTCGAGAAGATAGATCAGATGGAGTTCGAGGACGCT CAAAGGAACGAAGGCGCCCACAAGGAACGTCACAGAGGAACAGAAAGACGACAGCGGGCA TCATCACGGTGAGGATGAGCAGAGTGGAGCTGAAGGCGACGGCANAGAGCAGAGAAGCGG AAATTCCCACGCTCCTGAAGACTCCGAATCCTCAGAAGAGACAGAAGGGAGACAGAGGAG GGATGAAATAACCGTGGATTCAACCAAGGAGCGAGATGGTCAGTGCAGCACCACGGGGCC GTCTGTCAGGGGCGGAGGCGGCCCCGATGATGCAGGGGCCCGGGGAGAGCTGCAGTAGAT GCTCCTCGTTAATGAGAAATAGTTAGTTATGTGTTGATGCTTCAGTAGAATGAGAAGATC CAAAGGAGCCTCTAACAGCAGCATCTTTTGTCTGACGTGTACTTTAAAACACCATAAAGA TTTACAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2264#0      GCTGTTTGTGTCTCTCTCTGTTGCAGCGTTTCCATCAGGTGAGCAGAACAAACCTTTGAG 60
consensus_2264#1      ---------------------------GGGACCTTCAGAACCGCAAGATGAAACTTCCAG 33
                                                 *   ** ****    ***  *  ** ***  **

consensus_2264#0      TTCTGAAGAGATGAAGTGGAATTTGACTGATCCGCTCCGTCTTCCAGCTCTCTCTGCGTC 120
consensus_2264#1      CGCTGCTGATTTGTGTC----TCTCTCTGTTGCAGCGTTTCCATCAGCTCTCTCTGCGTC 89
                        ***  **  **        * *  *** * *      **   ****************

consensus_2264#0      CCTGAACTCTGCAGAGGAAGATGGGGTAGCAGCTCAGCACGATGGCCTGACCGAGCTCCA 180
consensus_2264#1      CCTGAACTCTGCAGAGGAAGATGGGGTAGCAGCTCAGCACGATGGNCTGACCGAGCTCGA 149
                      ********************************************* ************ *

consensus_2264#0      GAAGATAGATCAGATGGAGTTCGAGGCCGCTCAAAGGAACGAAGCCGCCCACAAG-AACG 239
consensus_2264#1      GAAGATAGATCAGATGGAGTTCGAGGACGCTCAAAGGAACGAAGGCGCCCACAAGGAACG 209
                      ************************** ***************** ********** ****

consensus_2264#0      TCACAGAGGAACAGAAAGACGACAGCGGCCATCATCACG------ATGAGCAGAGTGCAG 293
consensus_2264#1      TCACAGAGGAACAGAAAGACGACAGCGGGCATCATCACGGTGAGGATGAGCAGAGTGGAG 269
                      **************************** **********      ************ **

consensus_2264#0      CTGAAGGCGACGGCAAAGAGCAGAGAAGCGGAAATTCCCACGCTCCTGAAGACTCCGAAT 353
consensus_2264#1      CTGAAGGCGACGGCANAGAGCAGAGAAGCGGAAATTCCCACGCTCCTGAAGACTCCGAAT 329
                      *************** ********************************************

consensus_2264#0      CCTCAGAAGAGACAGAAGGGAGACAGAGGAGGGATGAAATAACCGTGGATTCAACCAAGG 413
consensus_2264#1      CCTCAGAAGAGACAGAAGGGAGACAGAGGAGGGATGAAATAACCGTGGATTCAACCAAGG 389
                      ************************************************************

consensus_2264#0      AGCGAGATGGTCAGTGCAGCACCACGGGGCCGTCTGTCAGGGGCGGAGGCGGCCCCGATG 473
consensus_2264#1      AGCGAGATGGTCAGTGCAGCACCACGGGGCCGTCTGTCAGGGGCGGAGGCGGCCCCGATG 449
                      ************************************************************

consensus_2264#0      ATGCAGGGGCCCGGGGAGAGCTGCAGTAGATGCTCCTCGTTAATGAGAAATAGTTAGTTA 533
consensus_2264#1      ATGCAGGGGCCCGGGGAGAGCTGCAGTAGATGCTCCTCGTTAATGAGAAATAGTTAGTTA 509
                      ************************************************************

consensus_2264#0      TGTGTTGATGCTTCAGTAGAATGAGAAGATCCAAAGGAGCCTCTAACAGCAGCATCTTTT 593
consensus_2264#1      TGTGTTGATGCTTCAGTAGAATGAGAAGATCCAAAGGAGCCTCTAACAGCAGCATCTTTT 569
                      ************************************************************

consensus_2264#0      GTCTGACGTGTACTT----------------------- 608
consensus_2264#1      GTCTGACGTGTACTTTAAAACACCATAAAGATTTACAC 607
                      ***************                       




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)