These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2268#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 801 fasta sequence [AGTACTGCTGGCGGGAGCGTCTCTCTCAGCTGTGTAGGGATTCCAGGCGTATTCAGTTCGCCCAAAACCCCAGATCTCTCCTTTGAGGCTCAAGAGCACACGGGGGCAGTCCACCACCTCTCTGATTCCTACTTCTCAAGCGAGGCATGGAGGAACGTCACGATACCCATGGAAACCGTCGCCGGCGTGACGAAGCGCAGCTCTTGCTGGAGGCTCAACTTGGAAATTGTAAAGAATTACACGCTGAGCGAGGTCGTCCCGCACGTGGACGTGAACGTCTCCCGCATTCCAACGGAGAAGTGTCTGGATGGGTGGATATACAGTAAAGACATATACCAGTCAAGCATTGTCTCGGAGTGGGACTTGGTTTGCGACAATGGATACAAAGTCCCACTGAGCACCTCCGTCCACTACCTCGGTGTGCTCGTGGGGGCGTTCCTCTCGGGCCAGATGTCGGACAGATATGGAAGGAGACCGGCGCTGTTTTTCATGATGGCTCTCCAGACTGTTACGATCACAGCACAGATTTTCTCCCCAAACTGGGAGATCTTCACCTTCATCTACTTCTTTGTTGGGGCAGGAGGATTTTCCAACTACATCATTGCGTTTGTTCTGGGTACGGAAACACTAAGCCCCAAAGCCAGAGTGGTCTTCTGCTCCCTCGGGGTTTTCATGTGCTCTGCTCTGGGCTACATGATGATGCCGGCGGGGGCCTATTTTCTCCGTGAATGGAGGCTGTTGTTGATAGCTATGGCCGCCTCTGGTGTCATCTACATCCCTCTGTGGTGGATCCTTCCAGAA] [+] EMBL CA591518 [AGTACTGCTGGCGGGAGCGTCTCTCTCAGCTGTGTAGGGATTCCAGGCGTATTCAGTTCGCCCAAAACCCCAGATCTCTCCTTTGAGGCTCAAGAGCACACGGGGGCAGTCCACCACCTCTCTGATTCCTACTTCTCAAGCGAGGCATGGAGGAACGTCACGATACCCATGGAAACCGTCGCCGGCGTGACGAAGCGCAGCTCTTGCTGGAGGCTCAACTTGGAAATTGTAAAGAATTACACGCTGAGCGAGGTCGTCCCGCACGTGGACGTGAACGTCTCCCGCATTCCAACGGAGAAGTGTCTGGATGGGTGGATATACAGTAAAGACATATACCAGTCAAGCATTGTCTCGGAGTGGGACTTGGTTTGCGACAATGGATACAAAGTCCCACTGAGCACCTCCGTCCACTACCTCGGTGTGCTCGTGGGGGCGTTCCTCTCGGGCCAGATGTCGGACAGATATGGAAGGAGACCGGCGCTGTTTTTCATGATGGCTCTCCAGACTGTTACGATCACAGCACAGATTTTCTCCCCAAACTGGGAGATCTTCACCTTCATCTACTTCTTTGTTGGGGCAGGAGGATTTTCCAACTACATCATTGCGTTTGTTCTGGGTACGGAAACACTAAGCCCCAAAGCCAGAGTGGTCTTCTGCTCCCTCGGGGTTTTCATGTGCTCTGCTCTGGGCTACATGATGATGCCGGCGGGGGCCTATTTTCTCCGTGAATGGAGGCTGTTGTTGATAGCTATGGCCGCCTCTGGTGTCATCTACATCCCTCTGTGGTGGATCCTTCCAGAA] consensusID : consensus_2268#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 771 fasta sequence [ATCAAAATGGTGATTTTAAGGAGGCGGTTTTAGTGGAGGGTTGTTTGAGGTATGGTGGAAGGGGAGGTGTGCTCCGTGGTGTGTCCTCATTTTCTGTAGGAGCACAGTACTGCTGGCGGGAGCGTCTCTCTCAGAGGTGTAGGGATTCCAGGCGTATTCAGTTCGCCCAAAACCCCAGATCTCTCCTTTGAGGCTCAAGAGCACACGGGGGCAGTCCACCACCTCTCTGATTCCTACTTCTCAAGGTAATGGGTGATTCAAAAATTCGAGATTATGACACGATAACCTCTTTTCTCGGGGACTGGGGAGCCTTTCATAGAAGGATATTTTTAGCCCTCGCCATCAGCATACTGCCAAATGGATTTATCGGCGCCTATATCATATTCGTCGCTGCCATTCCGACTCATGAGTGTTACATTCCCCCGAAATACAATATCAGCGAGGCATGGAGGAACGTCACGATACCCATGGAAACCGTCGGCGGCGTGAGGAAGCGCAGCTCTTGCTGGAGGCTCAACTTGGAAATTGTAAAGAATTACACGCTGAGCGAGGTCGTCCCGCACGTGGACGTGAACGTCTCCCGCATTCCAACGGAGAAGTGTCTGGATGGGTGGATATACGGTAAAGACATATACCAGTCAAGCATTGTCTCGGAGTGGGACTTGGTTTGGGGACATGGATACAAAGTCCCACTGAGCACCTCCGGCCACTACCTCGGGGGGGGTCGGGGGGCGGTCCTCTCGGCCAAATGTCGACAGAAATGGGAGGAAA] [+] EMBL CA590157 [ATCAAAATGGTGATTTTAAGGAGGCGGTTTTAGTGGAGGGTTGTTTGAGGTATGGTGGAAGGGGAGGTGTGCTCCGTGGTGTGTCCTCATTTTCTGTAGGAGCACAGTACTGCTGGCGGGAGCGTCTCTCTCAGAGGTGTAGGGATTCCAGGCGTATTCAGTTCGCCCAAAACCCCAGATCTCTCCTTTGAGGCTCAAGAGCACACGGGGGCAGTCCACCACCTCTCTGATTCCTACTTCTCAAGGTAATGGGTGATTCAAAAATTCGAGGTTATGACACGATAACCTCTTTTCTCGGGGACTGGGGAGCCTTTCATAGAAGGATATTTTTAGCCCTCGCCATCAGCATACTGCCAAATGGATTTATCGGCGCCTATATCATATTCGTCGCTGCCATTCCGACTCATGAGTGTTACATTCCCCCGAAATACAATATCAGCGAGGCATGGAGGAACGTCACGATACCCATGGAAACCGTCGCCGGCGTGACGAAGCGCAGCTCTTGCTGGAGGCTCAACTTGGAAATTGTAAAGAATTACACGCTGAGCGAGGTCGTCCCGCACGTGGACGTGAACGTCTCCCGCATTCCAACGGAGAAGTGTCTGGATGGGTGGATA ] [+] EMBL FR0059090 [ TGTGCTCCGTGGTGTGTCCTCATTTTCTGTAGGAGCACAGTACTGCTGGCGGGAGCGTCTCTCTCAGAGGTGTAGGGATTCCAGGCGTATTCAGTTCGCCCAAAACCCCAGATCTCTCCTTTGAGGCTCAAGAGCACACGGGGGCAGTCCACCACCTCTCTGATTCCTACTTCTCAAGGTAATGGGTGATTCAAAAATTCGAGATTATGACACGATAACCTCTTTTCTCGGGGACTGGGGAGCCTTTCATAGAAGGATATTTTTAGCCCTCGCCATCAGCATACTGCCAAATGGATTTATCGG ] [+] EMBL CA589525 [ GTGGTGTGTCCTCATTTTCTGTAGGAGCACAGTACTGCTGGCGGGAGCGTCTCTCTCAGAGGTGTAGGGATTCCAGGCGTATTCAGTTCGCCCAAAACCCCAGATCTCTCCTTTGAGGCTCAAGAGCACACGGGGGCAGTCCACCACCTCTCTGATTCCTACTTCTCAAGGTAATGGGTGATTCAAAAATTCGAGATTATGACACGATAACCTCTTTTCTCGGGGACTGGGGAGCCTTTCATAGAAGGATATTTTTAGCCCTCGCCATCAGCATACTGCCAAATGGATTTATCGGCGCCTATATCATATTCGTCGCTGCCATTCCGACTCATGAGTGTTACATTCCCCCGAAATACAATATCAGCGAGGCATGGAGGAACGTCACGATACCCATGGAAACCGTCGGCGGCGTGAGGAAGCGCAGCTCTTGCTGGAGGCTCAACTTGGAAATTGTAAAGAATTACACGCTGAGCGAGGTCGTCCCGCACGTGGACGTGAACGTCTCCCGCATTCCAACGGAGAAGTGTCTGGATGGGTGGATATACGGTAAAGACATATACCAGTCAAGCATTGTCTCGGAGTGGGACTTGGTTTGGCGACATGGATACAAAGTCCCACTGAGCACCTCC ] [+] EMBL CA588107 [ GTGTCCTCATTTTCTGTAGGA CTTCGAACAGCTGGCGGGAGCGTCTCTCTCAGAGGTGTAGGGATTCCAGGCGTATTCAGTTCGCCCAAAACCCCAGATCTCTCCTTTGAGGCTCAAGAGCACACGGGGGCAGTCCACCACCTCTCTGATTCCTACTTCTCAAGGTAATGGGTGATTCAAAGATTCGAGATTATGACACGATAACCTCTTTTCTCGGGGACTGGGGAGCCTTTCATAGAAGGATATTTTTAGCCCTCGCCATCAGCATACTGCCAAATGGATTTATCGGCGCCTATATCATATTCGTCGCTGCCATTCCGACTCATGAGTGTTACATTCCCCCGAAATACAATATCAGCGAGGCATGGAGGAACGTCACGATACCCATGGAAACCGTCGGCGGCGTGAGGAAGCGCAGCTCTTGCTGGAGGCTCAACTTGGAAATTGTAAAGAATTACACGCTGAGCGAGGTTGTCCCGCACGTGGACGTGAACGTCTCCCGCATCCCACCGGAGAAGGGGCTGGATGGGTGAATATACAGTAAAGACATATACCCGTCAAGCATTGTCTCGGAGTGGGACTTGGTTTGCGACCATGGATACAAAGTCCC CTGAGCACCTCCGGCCACTACCTCGGGGGGGGTCGGGGGGCGGTCCTCTCGGCCAAATGTCGACAGAAATGGGAGGAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2268#0 ------------------------------------------------------------ consensus_2268#1 ATCAAAATGGTGATTTTAAGGAGGCGGTTTTAGTGGAGGGTTGTTTGAGGTATGGTGGAA 60 consensus_2268#0 ---------------------------------------------AGTACTGCTGGCGGG 15 consensus_2268#1 GGGGAGGTGTGCTCCGTGGTGTGTCCTCATTTTCTGTAGGAGCACAGTACTGCTGGCGGG 120 *************** consensus_2268#0 AGCGTCTCTCTCAGCTGTGTAGGGATTCCAGGCGTATTCAGTTCGCCCAAAACCCCAGAT 75 consensus_2268#1 AGCGTCTCTCTCAGAGGTGTAGGGATTCCAGGCGTATTCAGTTCGCCCAAAACCCCAGAT 180 ************** ******************************************** consensus_2268#0 CTCTCCTTTGAGGCTCAAGAGCACACGGGGGCAGTCCACCACCTCTCTGATTCCTACTTC 135 consensus_2268#1 CTCTCCTTTGAGGCTCAAGAGCACACGGGGGCAGTCCACCACCTCTCTGATTCCTACTTC 240 ************************************************************ consensus_2268#0 TCAAG-CGAGGCATGGAGGAACGTCACGATACC----CATGGAAACCGTCGCCGGCGTGA 190 consensus_2268#1 TCAAGGTAATGGGTGATTCAAAAATTCGAGATTATGACACGATAACCTCTTTTCTCGGGG 300 ***** * * ** ** *** * ** * **** ** * consensus_2268#0 CGAAGCGCAGCTCTTGCTGGAGGCTCAACTTGGAAATTGTAAAGAATTACACGCTGAGCG 250 consensus_2268#1 ACTGGGGAGCCTTTCATAGAAGGATATTTTTAGCCCTCGCCATCAGCATACTGCCAAATG 360 * * ** * * *** * ** * * * * * ** * * consensus_2268#0 AGGTCGTCCCGCACGTGGA-CGTGAACGTCTCCCGCATTCCAACGGAGAAGTGTCTGGAT 309 consensus_2268#1 GATTTATCG-GCGCCTATATCATATTCGTCGCTGCCATTCCGACTCATGAGTGTTACATT 419 * ** ** * * * * * **** * ****** ** * ***** * consensus_2268#0 GGGTGGATATACAGTAAAGACATATACCAGTCAAGCATTGTCTCGGAGTGGGACTTGGTT 369 consensus_2268#1 CCCCCGAAATACA----------ATATCAGCGAGGCAT--------GGAGGAAC------ 455 ** ***** *** *** * **** * ** ** consensus_2268#0 TGCGACAATGGATACAAAGTCCCACTGAGCACCTCCGTCCACTACCTCGGTGTGCTCGTG 429 consensus_2268#1 -GTCACGATACCCATGGAAACC-----GTCGGCGGCGTGAGGAAGCGCAGC-TCTTGCTG 508 * ** ** * * ** * * *** * * * * * * ** consensus_2268#0 GGGGCGTTCCTCTCGGGCCAGATGTCGGACAGATATGGAAGGAGACCGGCGCTGTTTTTC 489 consensus_2268#1 GAGGC-------TCAACTTGGAAATTGTAAAGAATTACACGCTGAGCGAGGTCGTCCCGC 561 * *** ** ** * * * *** * * * ** ** * ** * consensus_2268#0 ATGATGGCTCTCCAGACTGTTACGATCACAGCACAGATTTTCTCCCCAAACTGGGAGATC 549 consensus_2268#1 ACGTGGACGTGAACGTCTCCCGC-ATTCCAACGGAGAAGTGT---CTGGATGGGTGGATA 617 * * * * * ** * ** ** * *** * * * ** *** consensus_2268#0 TTCACCTTCATCTACTTCTTTGTTGGGGCAGGAGGATTTTCCAACTACATCATTGCGTTT 609 consensus_2268#1 TACGG-TAAAGACATATACCAGTCA-------AGCATTGTCT-----CGGAGTGGGACTT 664 * * * * * * ** ** *** ** * * * ** consensus_2268#0 GTTCTGGGTACGGAAACACTAAGCCCCAAAGCCAGAGTGGTCTTCTGCTCCCTCGGGGTT 669 consensus_2268#1 GGTTTGGGGACATGGATACAAAGTCCCACTG--AGCACCTCCGGCCACTACCTCGGGGGG 722 * * **** ** * ** *** **** * ** * * ** ******** consensus_2268#0 --TTCATGTGCTCTGCTCTGGGCTACATGATGATGCCGGCGGGGGCCTATTTTCTCCGTG 727 consensus_2268#1 GGTCGGGGGGCGGTCCTCTCGGCCAAATGTCGACAGAAATGGGAGGAAA----------- 771 * * ** * **** *** * *** ** *** * * consensus_2268#0 AATGGAGGCTGTTGTTGATAGCTATGGCCGCCTCTGGTGTCATCTACATCCCTCTGTGGT 787 consensus_2268#1 ------------------------------------------------------------ consensus_2268#0 GGATCCTTCCAGAA 801 consensus_2268#1 -------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |