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Takifugu rubripes
cluster # 2268 cluster # 2268       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2268#0 length = 801 sequences # 1  
consensus_2268#1 length = 771 sequences # 4  

consensusID : consensus_2268#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 801
fasta sequence
                              [AGTACTGCTGGCGGGAGCGTCTCTCTCAGCTGTGTAGGGATTCCAGGCGTATTCAGTTCGCCCAAAACCCCAGATCTCTCCTTTGAGGCTCAAGAGCACACGGGGGCAGTCCACCACCTCTCTGATTCCTACTTCTCAAGCGAGGCATGGAGGAACGTCACGATACCCATGGAAACCGTCGCCGGCGTGACGAAGCGCAGCTCTTGCTGGAGGCTCAACTTGGAAATTGTAAAGAATTACACGCTGAGCGAGGTCGTCCCGCACGTGGACGTGAACGTCTCCCGCATTCCAACGGAGAAGTGTCTGGATGGGTGGATATACAGTAAAGACATATACCAGTCAAGCATTGTCTCGGAGTGGGACTTGGTTTGCGACAATGGATACAAAGTCCCACTGAGCACCTCCGTCCACTACCTCGGTGTGCTCGTGGGGGCGTTCCTCTCGGGCCAGATGTCGGACAGATATGGAAGGAGACCGGCGCTGTTTTTCATGATGGCTCTCCAGACTGTTACGATCACAGCACAGATTTTCTCCCCAAACTGGGAGATCTTCACCTTCATCTACTTCTTTGTTGGGGCAGGAGGATTTTCCAACTACATCATTGCGTTTGTTCTGGGTACGGAAACACTAAGCCCCAAAGCCAGAGTGGTCTTCTGCTCCCTCGGGGTTTTCATGTGCTCTGCTCTGGGCTACATGATGATGCCGGCGGGGGCCTATTTTCTCCGTGAATGGAGGCTGTTGTTGATAGCTATGGCCGCCTCTGGTGTCATCTACATCCCTCTGTGGTGGATCCTTCCAGAA]

[+] EMBL CA591518             [AGTACTGCTGGCGGGAGCGTCTCTCTCAGCTGTGTAGGGATTCCAGGCGTATTCAGTTCGCCCAAAACCCCAGATCTCTCCTTTGAGGCTCAAGAGCACACGGGGGCAGTCCACCACCTCTCTGATTCCTACTTCTCAAGCGAGGCATGGAGGAACGTCACGATACCCATGGAAACCGTCGCCGGCGTGACGAAGCGCAGCTCTTGCTGGAGGCTCAACTTGGAAATTGTAAAGAATTACACGCTGAGCGAGGTCGTCCCGCACGTGGACGTGAACGTCTCCCGCATTCCAACGGAGAAGTGTCTGGATGGGTGGATATACAGTAAAGACATATACCAGTCAAGCATTGTCTCGGAGTGGGACTTGGTTTGCGACAATGGATACAAAGTCCCACTGAGCACCTCCGTCCACTACCTCGGTGTGCTCGTGGGGGCGTTCCTCTCGGGCCAGATGTCGGACAGATATGGAAGGAGACCGGCGCTGTTTTTCATGATGGCTCTCCAGACTGTTACGATCACAGCACAGATTTTCTCCCCAAACTGGGAGATCTTCACCTTCATCTACTTCTTTGTTGGGGCAGGAGGATTTTCCAACTACATCATTGCGTTTGTTCTGGGTACGGAAACACTAAGCCCCAAAGCCAGAGTGGTCTTCTGCTCCCTCGGGGTTTTCATGTGCTCTGCTCTGGGCTACATGATGATGCCGGCGGGGGCCTATTTTCTCCGTGAATGGAGGCTGTTGTTGATAGCTATGGCCGCCTCTGGTGTCATCTACATCCCTCTGTGGTGGATCCTTCCAGAA]


>consensus_2268#0 AGTACTGCTGGCGGGAGCGTCTCTCTCAGCTGTGTAGGGATTCCAGGCGTATTCAGTTCG CCCAAAACCCCAGATCTCTCCTTTGAGGCTCAAGAGCACACGGGGGCAGTCCACCACCTC TCTGATTCCTACTTCTCAAGCGAGGCATGGAGGAACGTCACGATACCCATGGAAACCGTC GCCGGCGTGACGAAGCGCAGCTCTTGCTGGAGGCTCAACTTGGAAATTGTAAAGAATTAC ACGCTGAGCGAGGTCGTCCCGCACGTGGACGTGAACGTCTCCCGCATTCCAACGGAGAAG TGTCTGGATGGGTGGATATACAGTAAAGACATATACCAGTCAAGCATTGTCTCGGAGTGG GACTTGGTTTGCGACAATGGATACAAAGTCCCACTGAGCACCTCCGTCCACTACCTCGGT GTGCTCGTGGGGGCGTTCCTCTCGGGCCAGATGTCGGACAGATATGGAAGGAGACCGGCG CTGTTTTTCATGATGGCTCTCCAGACTGTTACGATCACAGCACAGATTTTCTCCCCAAAC TGGGAGATCTTCACCTTCATCTACTTCTTTGTTGGGGCAGGAGGATTTTCCAACTACATC ATTGCGTTTGTTCTGGGTACGGAAACACTAAGCCCCAAAGCCAGAGTGGTCTTCTGCTCC CTCGGGGTTTTCATGTGCTCTGCTCTGGGCTACATGATGATGCCGGCGGGGGCCTATTTT CTCCGTGAATGGAGGCTGTTGTTGATAGCTATGGCCGCCTCTGGTGTCATCTACATCCCT CTGTGGTGGATCCTTCCAGAA



consensusID : consensus_2268#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 771
fasta sequence
                              [ATCAAAATGGTGATTTTAAGGAGGCGGTTTTAGTGGAGGGTTGTTTGAGGTATGGTGGAAGGGGAGGTGTGCTCCGTGGTGTGTCCTCATTTTCTGTAGGAGCACAGTACTGCTGGCGGGAGCGTCTCTCTCAGAGGTGTAGGGATTCCAGGCGTATTCAGTTCGCCCAAAACCCCAGATCTCTCCTTTGAGGCTCAAGAGCACACGGGGGCAGTCCACCACCTCTCTGATTCCTACTTCTCAAGGTAATGGGTGATTCAAAAATTCGAGATTATGACACGATAACCTCTTTTCTCGGGGACTGGGGAGCCTTTCATAGAAGGATATTTTTAGCCCTCGCCATCAGCATACTGCCAAATGGATTTATCGGCGCCTATATCATATTCGTCGCTGCCATTCCGACTCATGAGTGTTACATTCCCCCGAAATACAATATCAGCGAGGCATGGAGGAACGTCACGATACCCATGGAAACCGTCGGCGGCGTGAGGAAGCGCAGCTCTTGCTGGAGGCTCAACTTGGAAATTGTAAAGAATTACACGCTGAGCGAGGTCGTCCCGCACGTGGACGTGAACGTCTCCCGCATTCCAACGGAGAAGTGTCTGGATGGGTGGATATACGGTAAAGACATATACCAGTCAAGCATTGTCTCGGAGTGGGACTTGGTTTGGGGACATGGATACAAAGTCCCACTGAGCACCTCCGGCCACTACCTCGGGGGGGGTCGGGGGGCGGTCCTCTCGGCCAAATGTCGACAGAAATGGGAGGAAA]

[+] EMBL CA590157             [ATCAAAATGGTGATTTTAAGGAGGCGGTTTTAGTGGAGGGTTGTTTGAGGTATGGTGGAAGGGGAGGTGTGCTCCGTGGTGTGTCCTCATTTTCTGTAGGAGCACAGTACTGCTGGCGGGAGCGTCTCTCTCAGAGGTGTAGGGATTCCAGGCGTATTCAGTTCGCCCAAAACCCCAGATCTCTCCTTTGAGGCTCAAGAGCACACGGGGGCAGTCCACCACCTCTCTGATTCCTACTTCTCAAGGTAATGGGTGATTCAAAAATTCGAGGTTATGACACGATAACCTCTTTTCTCGGGGACTGGGGAGCCTTTCATAGAAGGATATTTTTAGCCCTCGCCATCAGCATACTGCCAAATGGATTTATCGGCGCCTATATCATATTCGTCGCTGCCATTCCGACTCATGAGTGTTACATTCCCCCGAAATACAATATCAGCGAGGCATGGAGGAACGTCACGATACCCATGGAAACCGTCGCCGGCGTGACGAAGCGCAGCTCTTGCTGGAGGCTCAACTTGGAAATTGTAAAGAATTACACGCTGAGCGAGGTCGTCCCGCACGTGGACGTGAACGTCTCCCGCATTCCAACGGAGAAGTGTCTGGATGGGTGGATA                                                                                                                                                          ]
[+] EMBL FR0059090            [                                                                   TGTGCTCCGTGGTGTGTCCTCATTTTCTGTAGGAGCACAGTACTGCTGGCGGGAGCGTCTCTCTCAGAGGTGTAGGGATTCCAGGCGTATTCAGTTCGCCCAAAACCCCAGATCTCTCCTTTGAGGCTCAAGAGCACACGGGGGCAGTCCACCACCTCTCTGATTCCTACTTCTCAAGGTAATGGGTGATTCAAAAATTCGAGATTATGACACGATAACCTCTTTTCTCGGGGACTGGGGAGCCTTTCATAGAAGGATATTTTTAGCCCTCGCCATCAGCATACTGCCAAATGGATTTATCGG                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CA589525             [                                                                           GTGGTGTGTCCTCATTTTCTGTAGGAGCACAGTACTGCTGGCGGGAGCGTCTCTCTCAGAGGTGTAGGGATTCCAGGCGTATTCAGTTCGCCCAAAACCCCAGATCTCTCCTTTGAGGCTCAAGAGCACACGGGGGCAGTCCACCACCTCTCTGATTCCTACTTCTCAAGGTAATGGGTGATTCAAAAATTCGAGATTATGACACGATAACCTCTTTTCTCGGGGACTGGGGAGCCTTTCATAGAAGGATATTTTTAGCCCTCGCCATCAGCATACTGCCAAATGGATTTATCGGCGCCTATATCATATTCGTCGCTGCCATTCCGACTCATGAGTGTTACATTCCCCCGAAATACAATATCAGCGAGGCATGGAGGAACGTCACGATACCCATGGAAACCGTCGGCGGCGTGAGGAAGCGCAGCTCTTGCTGGAGGCTCAACTTGGAAATTGTAAAGAATTACACGCTGAGCGAGGTCGTCCCGCACGTGGACGTGAACGTCTCCCGCATTCCAACGGAGAAGTGTCTGGATGGGTGGATATACGGTAAAGACATATACCAGTCAAGCATTGTCTCGGAGTGGGACTTGGTTTGGCGACATGGATACAAAGTCCCACTGAGCACCTCC                                                                   ]
[+] EMBL CA588107             [                                                                                GTGTCCTCATTTTCTGTAGGA CTTCGAACAGCTGGCGGGAGCGTCTCTCTCAGAGGTGTAGGGATTCCAGGCGTATTCAGTTCGCCCAAAACCCCAGATCTCTCCTTTGAGGCTCAAGAGCACACGGGGGCAGTCCACCACCTCTCTGATTCCTACTTCTCAAGGTAATGGGTGATTCAAAGATTCGAGATTATGACACGATAACCTCTTTTCTCGGGGACTGGGGAGCCTTTCATAGAAGGATATTTTTAGCCCTCGCCATCAGCATACTGCCAAATGGATTTATCGGCGCCTATATCATATTCGTCGCTGCCATTCCGACTCATGAGTGTTACATTCCCCCGAAATACAATATCAGCGAGGCATGGAGGAACGTCACGATACCCATGGAAACCGTCGGCGGCGTGAGGAAGCGCAGCTCTTGCTGGAGGCTCAACTTGGAAATTGTAAAGAATTACACGCTGAGCGAGGTTGTCCCGCACGTGGACGTGAACGTCTCCCGCATCCCACCGGAGAAGGGGCTGGATGGGTGAATATACAGTAAAGACATATACCCGTCAAGCATTGTCTCGGAGTGGGACTTGGTTTGCGACCATGGATACAAAGTCCC CTGAGCACCTCCGGCCACTACCTCGGGGGGGGTCGGGGGGCGGTCCTCTCGGCCAAATGTCGACAGAAATGGGAGGAAA]


>consensus_2268#1 ATCAAAATGGTGATTTTAAGGAGGCGGTTTTAGTGGAGGGTTGTTTGAGGTATGGTGGAA GGGGAGGTGTGCTCCGTGGTGTGTCCTCATTTTCTGTAGGAGCACAGTACTGCTGGCGGG AGCGTCTCTCTCAGAGGTGTAGGGATTCCAGGCGTATTCAGTTCGCCCAAAACCCCAGAT CTCTCCTTTGAGGCTCAAGAGCACACGGGGGCAGTCCACCACCTCTCTGATTCCTACTTC TCAAGGTAATGGGTGATTCAAAAATTCGAGATTATGACACGATAACCTCTTTTCTCGGGG ACTGGGGAGCCTTTCATAGAAGGATATTTTTAGCCCTCGCCATCAGCATACTGCCAAATG GATTTATCGGCGCCTATATCATATTCGTCGCTGCCATTCCGACTCATGAGTGTTACATTC CCCCGAAATACAATATCAGCGAGGCATGGAGGAACGTCACGATACCCATGGAAACCGTCG GCGGCGTGAGGAAGCGCAGCTCTTGCTGGAGGCTCAACTTGGAAATTGTAAAGAATTACA CGCTGAGCGAGGTCGTCCCGCACGTGGACGTGAACGTCTCCCGCATTCCAACGGAGAAGT GTCTGGATGGGTGGATATACGGTAAAGACATATACCAGTCAAGCATTGTCTCGGAGTGGG ACTTGGTTTGGGGACATGGATACAAAGTCCCACTGAGCACCTCCGGCCACTACCTCGGGG GGGGTCGGGGGGCGGTCCTCTCGGCCAAATGTCGACAGAAATGGGAGGAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2268#0      ------------------------------------------------------------
consensus_2268#1      ATCAAAATGGTGATTTTAAGGAGGCGGTTTTAGTGGAGGGTTGTTTGAGGTATGGTGGAA 60
                                                                                  

consensus_2268#0      ---------------------------------------------AGTACTGCTGGCGGG 15
consensus_2268#1      GGGGAGGTGTGCTCCGTGGTGTGTCCTCATTTTCTGTAGGAGCACAGTACTGCTGGCGGG 120
                                                                   ***************

consensus_2268#0      AGCGTCTCTCTCAGCTGTGTAGGGATTCCAGGCGTATTCAGTTCGCCCAAAACCCCAGAT 75
consensus_2268#1      AGCGTCTCTCTCAGAGGTGTAGGGATTCCAGGCGTATTCAGTTCGCCCAAAACCCCAGAT 180
                      **************  ********************************************

consensus_2268#0      CTCTCCTTTGAGGCTCAAGAGCACACGGGGGCAGTCCACCACCTCTCTGATTCCTACTTC 135
consensus_2268#1      CTCTCCTTTGAGGCTCAAGAGCACACGGGGGCAGTCCACCACCTCTCTGATTCCTACTTC 240
                      ************************************************************

consensus_2268#0      TCAAG-CGAGGCATGGAGGAACGTCACGATACC----CATGGAAACCGTCGCCGGCGTGA 190
consensus_2268#1      TCAAGGTAATGGGTGATTCAAAAATTCGAGATTATGACACGATAACCTCTTTTCTCGGGG 300
                      *****   * *  **    **     *** *      ** *  ****        ** * 

consensus_2268#0      CGAAGCGCAGCTCTTGCTGGAGGCTCAACTTGGAAATTGTAAAGAATTACACGCTGAGCG 250
consensus_2268#1      ACTGGGGAGCCTTTCATAGAAGGATATTTTTAGCCCTCGCCATCAGCATACTGCCAAATG 360
                          * *   ** *    * *** *    ** *   * *  *  *       **  *  *

consensus_2268#0      AGGTCGTCCCGCACGTGGA-CGTGAACGTCTCCCGCATTCCAACGGAGAAGTGTCTGGAT 309
consensus_2268#1      GATTTATCG-GCGCCTATATCATATTCGTCGCTGCCATTCCGACTCATGAGTGTTACATT 419
                         *  **  ** * *  * * *   **** *   ****** **  *  *****     *

consensus_2268#0      GGGTGGATATACAGTAAAGACATATACCAGTCAAGCATTGTCTCGGAGTGGGACTTGGTT 369
consensus_2268#1      CCCCCGAAATACA----------ATATCAGCGAGGCAT--------GGAGGAAC------ 455
                           ** *****          *** ***  * ****         * ** **      

consensus_2268#0      TGCGACAATGGATACAAAGTCCCACTGAGCACCTCCGTCCACTACCTCGGTGTGCTCGTG 429
consensus_2268#1      -GTCACGATACCCATGGAAACC-----GTCGGCGGCGTGAGGAAGCGCAGC-TCTTGCTG 508
                       *  ** **    *   *  **       *  *  ***     * * * *  *  *  **

consensus_2268#0      GGGGCGTTCCTCTCGGGCCAGATGTCGGACAGATATGGAAGGAGACCGGCGCTGTTTTTC 489
consensus_2268#1      GAGGC-------TCAACTTGGAAATTGTAAAGAATTACACGCTGAGCGAGGTCGTCCCGC 561
                      * ***       **      **  * * * ***  *  * *  ** **  *  **    *

consensus_2268#0      ATGATGGCTCTCCAGACTGTTACGATCACAGCACAGATTTTCTCCCCAAACTGGGAGATC 549
consensus_2268#1      ACGTGGACGTGAACGTCTCCCGC-ATTCCAACGGAGAAGTGT---CTGGATGGGTGGATA 617
                      * *  * *      * **    * **  ** *  ***  *     *   *  **  *** 

consensus_2268#0      TTCACCTTCATCTACTTCTTTGTTGGGGCAGGAGGATTTTCCAACTACATCATTGCGTTT 609
consensus_2268#1      TACGG-TAAAGACATATACCAGTCA-------AGCATTGTCT-----CGGAGTGGGACTT 664
                      * *   *  *   *  *    **         ** *** **      *    * *   **

consensus_2268#0      GTTCTGGGTACGGAAACACTAAGCCCCAAAGCCAGAGTGGTCTTCTGCTCCCTCGGGGTT 669
consensus_2268#1      GGTTTGGGGACATGGATACAAAGTCCCACTG--AGCACCTCCGGCCACTACCTCGGGGGG 722
                      * * **** **    * ** *** ****  *  **      *  *  ** ********  

consensus_2268#0      --TTCATGTGCTCTGCTCTGGGCTACATGATGATGCCGGCGGGGGCCTATTTTCTCCGTG 727
consensus_2268#1      GGTCGGGGGGCGGTCCTCTCGGCCAAATGTCGACAGAAATGGGAGGAAA----------- 771
                        *    * **  * **** *** * ***  **       *** *   *           

consensus_2268#0      AATGGAGGCTGTTGTTGATAGCTATGGCCGCCTCTGGTGTCATCTACATCCCTCTGTGGT 787
consensus_2268#1      ------------------------------------------------------------
                                                                                  

consensus_2268#0      GGATCCTTCCAGAA 801
consensus_2268#1      --------------
                                    




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)