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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2269#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 695 fasta sequence
[TTTGCTTCAGGTGCTCTCTGTGGGCTCGGAGGCTCCACCTCCAGGCGCGCCGCCGCTCCGTGCGCTCCTGCGCTCCTCCGCAGTCGTAGCTGCGCAGACGGACAGTCCGCACCACCGTGTCTGACTCTTTTCTCCC-AACCTGACACGATGAGCACCGTGGCCTCAGACGGCGTGTTTCTGTCCGCTTTACAGCCCAACAGCTTGGTGACCACCTACGGGCTCCCGTCGAACATCCGCCTGGTGAACGGGAGTTCCGCGTCGGACGAGGTGTCCAGAGCTCAGCGCGTCCAGCAGCAGGTTCAGATGAGACTGGCGGAGAAGTCCACACTTCCGCGTCAGAATGGATCAGCCGCGCACTACGCCATGTCAGACTATGGCGGCTCTTCGACAATGAATTATCAAACAAGCAGCTACACCCCGAACTTCAGCTCTAAGTCTTCCTTCGCGTACTCGGGCAGCAGAACGATGGGTCCGCTCATGACTCAGCGGTCAGGCTTTAGCAGCCAGTCCGCCGGCCCCAACATGCCCCAGTACCACAAGATCAGCGTTGGGGGTGGAGGCGTCAGCGGAGGGTTCGTTGGAGGCGGCGGCGGTGGCGGGTTTTACCAGGAAAATATGCGCATGGGCAACTTCCAGGGCACCGTGAGGCACCAGAGCCAGATGGACCATGAGCCCGTCCCCATGCCCGCGGTGGG]
[+] EMBL BU806119 [TTTGCTTCAGGTGCTCTCTGTGGGCTCGGAGGCTCCACCTCCAGGCGCGCCGCCGCTCCGTGCGCTCCTGCGCTCCTCCGCAGTCGTAGCTGCGCAGACGGCCTGTCCGCACCACCGTGTCTGACTCTTTTCTCCCAAACTTGACACGATGAGCACCGTGGCCTCAGACGGCGTGTTTCTGTCCGCTTTACAGCCCAACAGCTTGGTGACCACCTACGGGCTCCCGTCGAACATCCGCCTGGTGAACGGGAGTTCCGCGTCGGACGAGGTGTCCAGAGCTCAGCGCGTCCAGCAGCAGGTTCAGATGAGACTGGCGGAGAAGTCCACACTTCCGCGT ]
[+] EMBL CA588420 [ cactGAACAGTCCGCACCACCGTGTCTGACTCTTTTCTCCC ACCCTGACACGATGAGCACCGTGGCCTCAGACGGCGTGTTTCTGTCCGCTTTACAGCCCAACAGCTTGGTGACCACCTACGGGCTCCCGTCGAACATCCGCCTGGTGAACGGGAGTTCCGCGTCGGACGAGGTGTCCAGAGCTCAGCGCGTCCAGCAGCAGGTTCAGATGAGACTGGCGGAGAAGTCCACACTTCCGCGTCAGAATGGATCAGCCGCGCACTACGCCATGTCAGACTATGGCGGCTCTTCGACAATGAATTATCAAACAAGCAGCTACACCCCGAACTTCAGCTCTAAGTCTTCCTTCGCGTACTCGGGCAGCAGAACGATGGGTCCGCTCATGACTCAGCGGTCAGGCTTTAGCAGCCAGTCCGCCGGCCCCAACATGCCCCAGTACCACAAGATCAGCGTTGGGGGTGGAGGCGTCAGCGGAGGGTTCGTTGGAGGCGGCGGCGGTGGCGGGTTTTACCAGGAAAATATGCGCATGGGCAACTTCCAGGGCACCGTGAGGCACCAGAGCCAGATGGACCATGAGCCCGTCCCCATGCCCGCGGTGGG]
[+] EMBL FR0058337 [ CCGTGGCCTCAGACGGCGTGTTTCTGTCCGCTTTACAGCCCAACAGCTTGGTGACCACCTACGGGCTCCCGTCGAACATCCGCCTGGTGAACGGGAGTTCCGCGTCGGACGAGGTGTCCAGAGCTCAGCGCGTCCAGCAGCAGGTTCAGATGAGACTGGCGGAGAAGTCCACACTTCCGCGTCAGAATGGATCAGCCGCGCACTACGCCATGTCAGACTATGGCGGCTCTTCGACAATGAATTATCAAACAAGCAGCTACACCCCGAACTTCAGCTCTAAGTCTTCCTTCGCGTACTCGGGCAGCAGAACGATGGGTCCGCTCATGACTCAGCGGTCAGGCTTTAGCAGCCAGTCCGCCGGCCCCAACATGCCCCAGTACCACAAGATCAG ]
consensusID : consensus_2269#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 591 fasta sequence
[GTCCAGCCAGTGCACATCTGAGAGGAATGTCTGCAGCCACCATGGTCATGCCCAACAGCTTGGTGACCACCTACGGGCTCCCGTCGAACATCCGCCTGGAGAACGGGAGTTCCGCGTCGGACGAGGTGTCCAGAGCTCAGCGCGGCCAGCAGCAGGTTCAGATGAGACTGGCGGAGAAGTCCACACTTCCGCGTCAGAATGGATCAGCCGCGCACTACGCCATGTCAGACTATGGCGGCTCTTCGACAATGAATTATCAAACAGGCAGCTACACCCCGAACTTCAGCTCTAAGTCTTCCTTCGCGGACTCGGGCAGCAGAACGATGGGGCCGCTCATGACCTCAGCGGTCAGGCTTTAGCAGCCAGTCCGCCGGCCCCAACATGCCCCAGTACCACAAGATCAGCGTTGGGGGTGGAGGCGTCAGCGGAGGGTTCGTTGGAGGCGGCGGCGGTGGCGGGTTTTACCAGGAAAATATGCGCATGGGCAACTTCCAGGGCACCGTGAGGCACCAGAGCCAGATGGACCATGAGCCCGTCCCCATGCCCGCGGTGGGTCAGTTTAATCCCTGGATTGCAGATGGAAGCGATGCA]
[+] EMBL BU807259 [GTCCAGCCAGTGCACATCTGAGAGGAATGTCTGCAGCCACCATGGTCATGCCCAACAGCTTGGTGACCACCTACGGGCTCCCGTCGAACATCCGCCTGGTGAACGGGAGTTCCGCGTCGGACGAGGTGTCCAGAGCTCAGCGCGTCCAGCAGCAGGTTCAGATGAGACTGGCGGAGAAGTCCACACTTCCGCGTCAGAATGGATCAGCCGCGCACTACGCCATGTCAGACTATGGCGGCTCTTCGACAATGAATTATCAAACAAGCAGCTACACCCCGAACTTCAGCTCTAAGTCTTCCTTCGCGTACTCGGGCAGCAGAACGATGGGTCCGCTCATGA CTCAGCGGTCAGGCTTTAGCAGCCAGTCCGCCGGCCCCAACATGCCCCAGTACCACAAGATCAGCGTTGGGGGTGGAGGCGTCAGCGGAGGGTTCGTTGGAGGCGGCGGCGGTGGCGGGTTTTACCAGGAAAATATGCGCATGGGCAACTTCCAGGGCACCGTGAGGCACCAGAGCCAGATGGACCATGAGCCCGTCCCCATGCCCGCGGTGGGTCAGTTTAATCCCTGGATTGCAGATGGAAGCGATGCA]
[+] EMBL FR0058656 [ GTCGAACATCCGCCTGGAGAACGGGAGTTCCGCGTCGGACGAGGTGTCCAGAGCTCAGCGCGGCCAGCAGCAGGTTCAGATGAGACTGGCGGAGAAGTCCACACTTCCGCGTCAGAATGGATCAGCCGCGCACTACGCCATGTCAGACTATGGCGGCTCTTCGACAATGAATTATCAAACAGGCAGCTACACCCCGAACTTCAGCTCTAAGTCTTCCTTCGCGGACTCGGGCAGCAGAACGATGGGGCCGCTCATGACCTCAGCGGT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2269#0 TTTGCTTCAGGTGCTCTCTGTGGGCTCGGAGGCTCCACCTCCAGGCGCGCCGCCGCTCCG 60
consensus_2269#1 ------------------------------------------------------------
consensus_2269#0 TGCGCTCCTGCGCTCCTCCGCAGTCGTAGCTGCGCAGACGGACAGTCCGCACCACCGTGT 120
consensus_2269#1 ------------------------------------------------------------
consensus_2269#0 CTGACTCTTTTCTCCCAACCTGACACGATGAGCACCGTGGCCTCAGACGGCGTGTTTCTG 180
consensus_2269#1 ----------------------GTCCAGCCAGTGCAC--ATCTGAGA-GGAATGTCTGCA 35
* ** * ** *** ** *** *
consensus_2269#0 TCCGCTTTA--CA-GCCCAACAGCTTGGTGACCACCTACGGGCTCCCGTCGAACATCCGC 237
consensus_2269#1 GCCACCATGGTCATGCCCAACAGCTTGGTGACCACCTACGGGCTCCCGTCGAACATCCGC 95
** * * ** **********************************************
consensus_2269#0 CTGGTGAACGGGAGTTCCGCGTCGGACGAGGTGTCCAGAGCTCAGCGCGTCCAGCAGCAG 297
consensus_2269#1 CTGGAGAACGGGAGTTCCGCGTCGGACGAGGTGTCCAGAGCTCAGCGCGGCCAGCAGCAG 155
**** ******************************************** **********
consensus_2269#0 GTTCAGATGAGACTGGCGGAGAAGTCCACACTTCCGCGTCAGAATGGATCAGCCGCGCAC 357
consensus_2269#1 GTTCAGATGAGACTGGCGGAGAAGTCCACACTTCCGCGTCAGAATGGATCAGCCGCGCAC 215
************************************************************
consensus_2269#0 TACGCCATGTCAGACTATGGCGGCTCTTCGACAATGAATTATCAAACAAGCAGCTACACC 417
consensus_2269#1 TACGCCATGTCAGACTATGGCGGCTCTTCGACAATGAATTATCAAACAGGCAGCTACACC 275
************************************************ ***********
consensus_2269#0 CCGAACTTCAGCTCTAAGTCTTCCTTCGCGTACTCGGGCAGCAGAACGATGGGTCCGCTC 477
consensus_2269#1 CCGAACTTCAGCTCTAAGTCTTCCTTCGCGGACTCGGGCAGCAGAACGATGGGGCCGCTC 335
****************************** ********************** ******
consensus_2269#0 ATGAC-TCAGCGGTCAGGCTTTAGCAGCCAGTCCGCCGGCCCCAACATGCCCCAGTACCA 536
consensus_2269#1 ATGACCTCAGCGGTCAGGCTTTAGCAGCCAGTCCGCCGGCCCCAACATGCCCCAGTACCA 395
***** ******************************************************
consensus_2269#0 CAAGATCAGCGTTGGGGGTGGAGGCGTCAGCGGAGGGTTCGTTGGAGGCGGCGGCGGTGG 596
consensus_2269#1 CAAGATCAGCGTTGGGGGTGGAGGCGTCAGCGGAGGGTTCGTTGGAGGCGGCGGCGGTGG 455
************************************************************
consensus_2269#0 CGGGTTTTACCAGGAAAATATGCGCATGGGCAACTTCCAGGGCACCGTGAGGCACCAGAG 656
consensus_2269#1 CGGGTTTTACCAGGAAAATATGCGCATGGGCAACTTCCAGGGCACCGTGAGGCACCAGAG 515
************************************************************
consensus_2269#0 CCAGATGGACCATGAGCCCGTCCCCATGCCCGCGGTGGG--------------------- 695
consensus_2269#1 CCAGATGGACCATGAGCCCGTCCCCATGCCCGCGGTGGGTCAGTTTAATCCCTGGATTGC 575
***************************************
consensus_2269#0 ----------------
consensus_2269#1 AGATGGAAGCGATGCA 591
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |